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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1126 fasta sequence
[GCGCCACACTCCTCGAACCACCACCACCACCACCACGTGTTCGATCGCGTCCTCCAAGCCCCAGCACCTACGCGTCGTCGCGCCATGGCCGGCTTCGGCTTGGACCAGCACCTCGACCTCATCCGCGCCCACCTCCTCGAAGACGCCCACCACCACGTCCTCGCGCCATCGCCGTCGCCCTCGCCACCGGGTACTGGGCGTGTCAGGCCGGCGCCCGTGTCGCTGCCCCCGAGGCCGCCGCTCCTGTGGGCGGCGGCGTCGGCGGCGCCGCGGCAGCAGGAGGAGTGCTTCGAGCTCGGCGGCGGCTACGCGGGGGAGGGGGAGGGGGAGGAGGAGGACGACTTCCGGCGGTACCGCGGGGTGCGGCAGCGGCCGTGGGGCAAGTACGCGGCGGAGATCCGGGACCCGGCGAGGAAGGGCGCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGCGCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCCGACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCCGGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAGAGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCAGCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTGTCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGAACACGTGATTTTGCTTTTGACTATGCTATTTGATGATTAAACAGAGAAGAAATATTCGTCTTACAAGATCATATCACCGAAAAGACTAGCTAGGCGCATGGAGTAGTACTGGAAACAAGCTCTGCTAAGGCCCTCTTTGTTTAGGCTTAAGCTTATTGGACTAGACTTTTAAGCCAGCTGTGGTTAATCTAGGCCCATTTTGGAAAAAAAAACATTAGCTGTAATTTTTCTCGAAGTTATATATTTCTTGCAC]
[+] EMBL AY341826 [GCGCCACACTCCTCGAACCACCACCACCACCACCACGTGTTCGATCGCGTCCTCCAAGCCCCAGCACCTACGCGTCGTCGCGCCATGGCCGGCTTCGGCTTGGACCAGCACCTCGACCTCATCCGCGCCCACCTCCTCGAAGACGCCCACCACCACGTCCTCGCGCCATCGCCGTCGCCCTCGCCACCGGGTACTGGGCGTGTCAGGCCGGCGCCCGTGTCGCTGCCCCCGAGGCCGCCGCTCCTGTGGGCGGCGGCGTCGGCGGCGCCGCGGCAGCAGGAGGAGTGCTTCGAGCTCGGCGGCGGCTACGCGGGGGAGGGGGAGGGGGAGGAGGAGGACGACTTCCGGCGGTACCGCGGGGTGCGGCAGCGGCCGTGGGGCAAGTACGCGGCGGAGATCCGGGACCCGGCGAGGAAGGGCGCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGCGCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCCGACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCCGGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAGAGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCAGCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTGTCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGAACACGTGATTTTGCTTTTGACTATGCTATTTGATGATTAAACAGAGAAGAAATATTCGTCTTACAAGATCATATCACCGAAAAGACTAGCTAGGCGCATGGAGTAGTACTGGAAACAAGCTCTGCTAAGGCCCTCTTTGTTTAGGCTTAAGCTTATTGGACTAGACTTTTAAGCCAGCTGTGGTTAATCTAGGCCCATTTTGGAAAAAAAAACATTAGCTGTAATTTTTCTCGAAGTTATATATTTCTTGCAC]
[+] EMBL CB657912 [ TCCAAGCCCCAGCACCTACGCGTCGTCGCGCCATGGCCGGCTTCGGCTTGGACCAGCACCTCGACCTCATCCGCGCCCACCTCCTCGAAGACGCCCACCACCACGTCCTCGCGCCATCGCCGTCGCCCTCGCCACCGGGTACTGGGCGTGTCAGGCCGGCGCCCGTGTCGCTGCCCCCGAGGCCGCCGCTCCTGTGGGCGGCGGCGTCGGCGGCGCCGCGGCAGCAGGAGGAGTGCTTCGAGCTCGGCGGCGGCTACGCGGGGGAGGGG ]
consensusID : consensus_8368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 793 fasta sequence
[AGATCCGGGACCCGCGAGGGAAGGGCGCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGCGCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCCGACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCCGGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAGAGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCAGCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTGTCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAAGCTGATCGATCGCTAGCTCCGGCCATGGACGGCGCCGTGGCGAGCTTGGAGTGCAGCCATGGCGCGCGCCCGGCGCGGTACACGCATGGCTGCCGCGTGGTGGTGTCCGTGACGTCACGTGCGAAGGATATGGCCTTAATCCTGAATTAGATAGGGTGTTCTTTGATTAATTCGCTAAACTTCGTAATATTAGGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGGTGATCGATGATCATAGTAGCTTCATTGCGATTTGTCAATGAAATGATATAAATATGTATTAATTACAAGTTGAAGAGTACTAATGAAGAACATCAGAGGCTCAGAGCAATTGAGCGC]
[-] EMBL CB657913 [AGATCCGGGACCCGCGAGGGAAGGGCGCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGCGCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCCGACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCCGGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAGAGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCAGCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTGTCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAAGCTGATCGATCGCTAGCTCCGGCCATGGACGGCGCCGTGGCGAGCTTGGAGTGCAGCCATGGCGCGCGCCCGGCGCGGTACACGCATGGCTGCCGCGTGGTGGTGTCCGTGACGTCACGTGCGAAGGATATGGCCTTAATCCTGAATTAGATAGGGTGTTCTTTGATTAATTCGCTAAACTTCGTAATATTAGGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGGTGATCGATGATCATAGTAGCTTCATTGCGATTTGTCAATGAAATGATATAAATATGTATTAATTACAAGTTGAAGAGTACTAATGAAGAACATCAGAGGCTCAGAGCAATTGAGCG ]
[+] EMBL AK107989 [ ATCGATCGCTAGCTCCGGCCATGGACGGCGCCGTGGCGAGCTTGGAGTGCAGCCATGGCGCGCGCCCGGCGCGGTACACGCATGGCTGCCGCGTGGTGGTGTCCGTGACGTCACGTGCGAAGGATATGGCCTTAATCCTGAATTAGATAGGGTGTTCTTTGATTAATTCGCTAAACTTCGTAATATTAGGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGGTGATCGATGATCATAGTAGCTTCATTGCGATTTGTCAATGAAATGATATAAATATGTATTAATTACAAGTTGAAGAGTACTAATGAAGAACATCAGAGGCTCAGAGCAATTGAGCGC]
[-] EMBL AW070010 [ gcCGAGGTACACGCATGGCTGCCGCGTGGTGGTGTCCGTGACGTCACGTGCGAAGGATATGGCCTTAATCCTGAATTAGATAGGGTGTTCTTTGATTAATTCGCTAAACTTCGTAATATTAGGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGGTGATCGATGATCATAGTAGCTTCATTGCGATTTGTCAATGAAATCATATAAATATGTATTAATTACAAGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8368#0 GCGCCACACTCCTCGAACCACCACCACCACCACCACGTGTTCGATCGCGTCCTCCAAGCC 60
consensus_8368#1 ------------------------------------------------------------
consensus_8368#0 CCAGCACCTACGCGTCGTCGCGCCATGGCCGGCTTCGGCTTGGACCAGCACCTCGACCTC 120
consensus_8368#1 ------------------------------------------------------------
consensus_8368#0 ATCCGCGCCCACCTCCTCGAAGACGCCCACCACCACGTCCTCGCGCCATCGCCGTCGCCC 180
consensus_8368#1 ------------------------------------------------------------
consensus_8368#0 TCGCCACCGGGTACTGGGCGTGTCAGGCCGGCGCCCGTGTCGCTGCCCCCGAGGCCGCCG 240
consensus_8368#1 ------------------------------------------------------------
consensus_8368#0 CTCCTGTGGGCGGCGGCGTCGGCGGCGCCGCGGCAGCAGGAGGAGTGCTTCGAGCTCGGC 300
consensus_8368#1 ------------------------------------------------------------
consensus_8368#0 GGCGGCTACGCGGGGGAGGGGGAGGGGGAGGAGGAGGACGACTTCCGGCGGTACCGCGGG 360
consensus_8368#1 ------------------------------------------------------------
consensus_8368#0 GTGCGGCAGCGGCCGTGGGGCAAGTACGCGGCGGAGATCCGGGACCCGGCGAGGAAGGGC 420
consensus_8368#1 ----------------------------------AGATCCGGGACCCGCGAGGGAAGGGC 26
************** ********
consensus_8368#0 GCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGC 480
consensus_8368#1 GCGAGGGTGTGGCTCGGCACCTACGACACCGCCGTCGAGGCCGCGCGCGCCTACGACCGC 86
************************************************************
consensus_8368#0 GCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCC 540
consensus_8368#1 GCCGCGTTCCAGCTCCGCGGGTCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGCCGCC 146
************************************************************
consensus_8368#0 GACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCC 600
consensus_8368#1 GACGCCGCCGTCAAGTGGGCCCCTCCCGTCGCCCCTATCCCCGCCGCCGCCATGTCCGCC 206
************************************************************
consensus_8368#0 GGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAG 660
consensus_8368#1 GGAAGAGGCAAGAGGGTGAGGTCGGAGGAGCAGTACTACTTGAGGGAGGTGAAGAAGGAG 266
************************************************************
consensus_8368#0 AGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCA 720
consensus_8368#1 AGGCTGATCATGGCGCCGCCGGAGAACTCCTCCTCGTCGTCGTCGTCGGCGGCGGCGGCA 326
************************************************************
consensus_8368#0 GCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTG 780
consensus_8368#1 GCCGGAGACATCTGGGACGAGCTGAAGGGGATCTGCAGCCTGCCGCCGCTCTCGCCGCTG 386
************************************************************
consensus_8368#0 TCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAATCGATTTGGCT------TTC 834
consensus_8368#1 TCGCCGCACCCGCACATGGCCTTCCCGCAGCTGTTCGTAAGCTGATCGATCGCTAGCTCC 446
**************************************** * * * * *
consensus_8368#0 GGCCAAATATTGAATTCTTTCGTTCTATTGCTGC--TCAGAACACGTGATTT-TGCTTTT 891
consensus_8368#1 GGCCATGGACGGCGCCGTGGCGAGCTTGGAGTGCAGCCATGGCGCGCGCCCGGCGCGGTA 506
***** * * * ** ** *** ** * ** * ** *
consensus_8368#0 GAC-TATG-CTATTTGATGATTAAA-CAGAGAAGAAATATTCGTCTTACAAGATCATATC 948
consensus_8368#1 CACGCATGGCTGCCGCGTGGTGGTGTCCGTGACGTCACGTGCGAAGGATATGGCCTTAAT 566
** *** ** ** * * * ** * * * ** * * * * **
consensus_8368#0 ACCGAAAAGACTAGCTAGGCGCATGGAGTAGTACTGGAAACAAGCTCTGCTAAGGCCCTC 1008
consensus_8368#1 CCTGAATTAGATAGG-GTGTTCTTTGATTAATTCGCTAAACTTCGTAATATTAGGTAATC 625
* *** *** * * * ** ** * * **** * * *** **
consensus_8368#0 --TTTG--TTTAGGCTTAAGCTTA-------TTGGACTA--GACTTTTAAGCCAGCTGTG 1055
consensus_8368#1 GATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGGTGATCGATG 685
**** *** *** ** ** * * *** * * * * * * **
consensus_8368#0 GTTAATCTAGGCCCATT-----TTGGAAAAAAAAACAT-TAGCTGTAATTTTTCTCGAAG 1109
consensus_8368#1 ATCATAGTAGCTTCATTGCGATTTGTCAATGAAATGATATAAATATGTATTAATTACAAG 745
* * *** **** *** ** *** ** ** * * ** * ***
consensus_8368#0 TTATATATTTCTTGCAC------------------------------- 1126
consensus_8368#1 TTGAAGAGTACTAATGAAGAACATCAGAGGCTCAGAGCAATTGAGCGC 793
** * * * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||