These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1234 fasta sequence [GCATTAGGCTTCCATCGTTATGAAAATATAGATGTATCATTACTCAAGAGAGAATACAAGAAAAAGGCTATGTTAGTCCACCCTGATAAGAACATGGGCAATGATAAAGCTGCTGATGCATTTAAAAAACTTCAAAATGCATACGAGGTTCTTCTTGATTCTTTGAAACGGAAGACATATGATGATGAGCTAAGGAGGGAGGAGCTTTTGAACTACTTCAGACGGTTTCAGAGTGCTTCTCAAAAGAAAGGAGGAAGTGGTATTTTTCGACAAGGGTTTAGCCCTTCTGAAGGTGTTGATGAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTGTGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAAAAGAAGAAGGGCAAGAAGCAATGGTAACTGAAGAAGGTCCGATAATGGCGATTCTTCTTTGTGAGCAGAAAGAAGTAAAACATATGGTGTTTGTTCGGTATAGTTATGCAGGAAAACACCCCAATAATAGGGGTCCTAGATGCTCAACCATCCTGACTCGCTTTAAGGCGATGCCATTCAAAATCATGATTCATCTTGCTGTGATTTTTCATATGGAGAATTAGAAATCAGAAGAGAAGAAAGGGCCATGTATGTGGCAAAGATTGTTGGAATGTAAAGCGCAAAATATGTTGAGCCTACATGATTGAATTGTTTGGACAGGTAGCGCAAGCTACAATTTCCATACACTTGTCATGAGATATATTACATTGTTGCTGATGTCTCGTTGATAAAA] [+] EMBL AK060945 [GCATTAGGCTTCCATCGTTATGAAAATATAGATGTATCATTACTCAAGAGAGAATACAAGAAAAAGGCTATGTTAGTCCACCCTGATAAGAACATGGGCAATGATAAAGCTGCTGATGCATTTAAAAAACTTCAAAATGCATACGAGGTTCTTCTTGATTCTTTGAAACGGAAGACATATGATGATGAGCTAAGGAGGGAGGAGCTTTTGAACTACTTCAGACGGTTTCAGAGTGCTTCTCAAAAGAAAGGAGGAAGTGGTATTTTTCGACAAGGGTTTAGCCCTTCTGAAGGTGTTGATGAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTGTGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAAAAGAAGAAGGGCAAGAAGCAATGGTAACTGAAGAAGGTCCGATAATGGCGATTCTTCTTTGTGAGCAGAAAGAAGTAAAACATATGGTGTTTGTTCGGTATAGTTATGCAGGAAAACACCCCAATAATAGGGGTCCTAGATGCTCAACCATCCTGACTCGCTTTAAGGCGATGCCATTCAAAATCATGATTCATCTTGCTGTGATTTTTCATATGGAGAATTAGAAATCAGAAGAGAAGAAAGGGCCATGTATGTGGCAAAGATTGTTGGAATGTAAAGCGCAAAATATGTTGAGCCTACATGATTGAATTGTTTGGACAGGTAGCGCAAG ] [+] EMBL AY224585 [ GATTCTTTGAAACGGAAGACATATGATGATGAGCTAAGGAGGGAGGAGCTTTTGAACTACTTCAGACGGTTTCAGAGTGCTTCTCAAAAGAAAGGAGGAAGTGGTATTTTTCGACAAGGGTTTAGCCCTTCTGAAGGTGTTGATGAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTGTGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAA ] [-] EMBL CA760224 [ GAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTG TAAAGCAGAATAGTGGCAATGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAAAAGAAGAAGGGCGAGAAGCAATGGTAACTGAAGAAGGTCCGATAATGGCGATTCTTCTTTGTGAGCAGAAAGAAGTAGAACATATGGTGTTTGTTCGGTATAGTTATGCAGGAAAACACCCCAATAATAGGGGTCCTAGATGCTCAACCATCCTGACTCGCTTTAAGGCGATGCCATTCAAAATCATGATTCATCTTGCTGTGATTTTTCATATGGAGAATTAGAAATCAGAAGAGAAGAAAGGGCCATGTATGTGGCAAAGATTGCTGGAATGTAAAGCGCAAAATATGTTGAGCCTACATGATTGAATTGTTTGGACAGGTAGCGCAAGCTACAATTTCCATACACTTGTCATGAGATATATTACATTGTTGCTGATGTCTCGTTGATAAAA] consensusID : consensus_8377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [AGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAAAAGNNGNNNNGCAAGANGCAATGGTAACTGAANNNNNTCCGNTNATGGCGNNNCTTCTTTGTGANNNNNNNNNNN] [+] EMBL CF197144 [AGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAAAAGNNGNNNNGCAAGANGCAATGGTAACTGAANNNNNTCCGNTNATGGCGNNNCTTCTTTGTGANNNNNNNNNNN] consensusID : consensus_8377#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [GGTGTTGATGAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTGTGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCNNNNNGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGNNNNNNNNNTCTTCGNNNNNNNGCNNNNTGCACTGCNNTCTGGCATGTTTGNNNNNT] [+] EMBL CF197081 [GGTGTTGATGAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTGTGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCNNNNNGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGNNNNNNNNNTCTTCGNNNNNNNGCNNNNTGCACTGCNNTCTGGCATGTTTGNNNNNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8377#0 GCATTAGGCTTCCATCGTTATGAAAATATAGATGTATCATTACTCAAGAGAGAATACAAG 60 consensus_8377#1 ------------------------------------------------------------ consensus_8377#2 ------------------------------------------------------------ consensus_8377#0 AAAAAGGCTATGTTAGTCCACCCTGATAAGAACATGGGCAATGATAAAGCTGCTGATGCA 120 consensus_8377#1 ------------------------------------------------------------ consensus_8377#2 ------------------------------------------------------------ consensus_8377#0 TTTAAAAAACTTCAAAATGCATACGAGGTTCTTCTTGATTCTTTGAAACGGAAGACATAT 180 consensus_8377#1 ------------------------------------------------------------ consensus_8377#2 ------------------------------------------------------------ consensus_8377#0 GATGATGAGCTAAGGAGGGAGGAGCTTTTGAACTACTTCAGACGGTTTCAGAGTGCTTCT 240 consensus_8377#1 ------------------------------------------------------------ consensus_8377#2 ------------------------------------------------------------ consensus_8377#0 CAAAAGAAAGGAGGAAGTGGTATTTTTCGACAAGGGTTTAGCCCTTCTGAAGGTGTTGAT 300 consensus_8377#1 ------------------------------------------------------------ consensus_8377#2 ---------------------------------------------------GGTGTTGAT 9 consensus_8377#0 GAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTG 360 consensus_8377#1 ------------------------------------------------------------ consensus_8377#2 GAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTG 69 consensus_8377#0 TGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTT 420 consensus_8377#1 -----------------------------AGCTAGATGGTGTCAGGACTGCAATGATTTT 31 consensus_8377#2 TGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTT 129 ******************************* consensus_8377#0 CACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGG 480 consensus_8377#1 CACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGG 91 consensus_8377#2 CACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGG 189 ************************************************************ consensus_8377#0 TTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGAT 540 consensus_8377#1 TTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGAT 151 consensus_8377#2 TTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGAT 249 ************************************************************ consensus_8377#0 GTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGC 600 consensus_8377#1 GTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGC 211 consensus_8377#2 GTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGC 309 ************************************************************ consensus_8377#0 TTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAG 660 consensus_8377#1 TTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAG 271 consensus_8377#2 TTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCNN 369 ********************************************************** consensus_8377#0 AGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTC 720 consensus_8377#1 AGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTC 331 consensus_8377#2 NNNGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGNNNNNNNNNTC 429 ********************************************** ** consensus_8377#0 TTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAAC 780 consensus_8377#1 TTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAAC 391 consensus_8377#2 TTCGNNNNNNNGCNNNNTGCACTGCNNTCTGGCATGTTTGNNNNNT-------------- 475 **** ** ******** ************* * consensus_8377#0 GAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAA 840 consensus_8377#1 GAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAA 451 consensus_8377#2 ------------------------------------------------------------ consensus_8377#0 AAGAAGAAGGGCAAGAAGCAATGGTAACTGAAGAAGGTCCGATAATGGCGATTCTTCTTT 900 consensus_8377#1 AAGNNGNNNNGCAAGANGCAATGGTAACTGAANNNNNTCCGNTNATGGCGNNNCTTCTTT 511 consensus_8377#2 ------------------------------------------------------------ consensus_8377#0 GTGAGCAGAAAGAAGTAAAACATATGGTGTTTGTTCGGTATAGTTATGCAGGAAAACACC 960 consensus_8377#1 GTGANNNNNNNNNNN--------------------------------------------- 526 consensus_8377#2 ------------------------------------------------------------ consensus_8377#0 CCAATAATAGGGGTCCTAGATGCTCAACCATCCTGACTCGCTTTAAGGCGATGCCATTCA 1020 consensus_8377#1 ------------------------------------------------------------ consensus_8377#2 ------------------------------------------------------------ consensus_8377#0 AAATCATGATTCATCTTGCTGTGATTTTTCATATGGAGAATTAGAAATCAGAAGAGAAGA 1080 consensus_8377#1 ------------------------------------------------------------ consensus_8377#2 ------------------------------------------------------------ consensus_8377#0 AAGGGCCATGTATGTGGCAAAGATTGTTGGAATGTAAAGCGCAAAATATGTTGAGCCTAC 1140 consensus_8377#1 ------------------------------------------------------------ consensus_8377#2 ------------------------------------------------------------ consensus_8377#0 ATGATTGAATTGTTTGGACAGGTAGCGCAAGCTACAATTTCCATACACTTGTCATGAGAT 1200 consensus_8377#1 ------------------------------------------------------------ consensus_8377#2 ------------------------------------------------------------ consensus_8377#0 ATATTACATTGTTGCTGATGTCTCGTTGATAAAA 1234 consensus_8377#1 ---------------------------------- consensus_8377#2 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||