These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1697 fasta sequence [GCGAGCCGGAGCGCGCAGGAGGCCTCCCATGGCCGTGCCTCCGCTTCTCCTCTTCCTCCTGCTGCTCTCCTCGTTCTCCTCCTGTGCCGCCGCCGCTTCCGGGGCTCCCGTGGGCGAGGACTACGTCCGGCCGCCCGCGGCGGCGCGGCGCTGCGGCCTCCACCACCGGAAGGCCCTCCTCAGCCTCTTCCCGTGGAGCAAGAAGAAGGACTCCTCTTCCGCCTCCGATCCGCAGCAGGTGCACATTTCACTAGCTGGAGAAAAGCACATGAGAGTTACATTTGTCACTGATGATAACTCCGTCCCTTCAGTTGTAGACTATGGAACTGAAGCAGGCACATACACATCAACGTCTCAAGGAGAAAGCACATCATACAGCTACTTAATGTATAGTTCAGGAAAGATCCATCATGTTGTTATTGGGCCCCTTAATGACAACACAGTTTACTACTACCGTTGTGGAGGACATGGTCCGGAATTCCAGTTTAAGACACCACCCTCCCAATTTCCCTTGTCATTGGCTGTTGTAGGTGATCTGGGGCAGACCAGTTGGACAACTTCGACACTTAATCACATTAAGCAGTGTGCACATGATATGCTTTTACTCCCTGGTGATCTCTCTTATGCGGATTATATGCAACATTTGTGGGATTCTTTTGGTACATTGGTGGAGCCACTTGCTAGCACCAGGCCCTGGATGGTGACAGAAGGAAATCATGAGAAGGAAAGGATACCGTTTTTTAAGTCTGGATTTCGATCATACAATGCACGATGGGAGGTGCCTTATGAAGAGAGCGAATCCACATCAAATCTCTACTACTCCTTCAAAGTTGCAGGGGTGCATGCTATAATGTTAGGTTCTTATACAGATTATGATGAAAGTTCAGATCAGTACGCTTGGCTTAAGGCTGATCTAGCTAAGGTTGACAGGAAAAGGACGCCATGGCTCATCGTATTGTTGCATGCACCATGGTATAATAGCAATTGGGCTCATCAAGGCGAAGGTGACAGTATGATGGCTGCAATGGAGCCTTTGCTCTATGCTGCTCATGTGGATATGGTAATCGCAGGTCATGTGCATGCTTATGAACGTGCGGAGCGAGTCTACAAGGGGGGACTTGATCCTTGTGGGGCTGTTCACATAACAATTGGGGATGGTGGAAACAGGGAAGGCTTGGCCCACAGGTACCGCAATCCGAAACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAATGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGATGATGTGTGGATAACGTC--GCTGGCTGGTTCCGGGTGCATCCAGGACGGTAGTCATGAGTACAGGAAAATTCTGATGTCCCCTTAAGAACATCTGAACAGACATACAGACTACAGTTAGTAGCATAGTCTAAGTGCCTGCCATGTATATTGTATATATGTTTACGACTTGCTAAAATACAATCTCAGAAGCTCTTTTTTTCTGTATTTTGAATCTTGGCTAATCTGGAGATACCACTGTAGCTTGTCGACATATCTCTTGATGTATGCAACAATGTTTGTAGCCAGCCAAGTGAATGGCATTCTGAGGAATGCTTACCTTGTGTAACTGGACGACAGTCATGATATGAAACATATGTTATGTTAAAAAAAAAAAAAAA] [+] EMBL AK060200 [GCGAGCCGGAGCGCGCAGGAGGCCTCCCATGGCCGTGCCTCCGCTTCTCCTCTTCCTCCTGCTGCTCTCCTCGTTCTCCTCCTGTGCCGCCGCCGCTTCCGGGGCTCCCGTGGGCGAGGACTACGTCCGGCCGCCCGCGGCGGCGCGGCGCTGCGGCCTCCACCACCGGAAGGCCCTCCTCAGCCTCTTCCCGTGGAGCAAGAAGAAGGACTCCTCTTCCGCCTCCGATCCGCAGCAGGTGCACATTTCACTAGCTGGAGAAAAGCACATGAGAGTTACATTTGTCACTGATGATAACTCCGTCCCTTCAGTTGTAGACTATGGAACTGAAGCAGGCACATACACATCAACGTCTCAAGGAGAAAGCACATCATACAGCTACTTAATGTATAGTTCAGGAAAGATCCATCATGTTGTTATTGGGCCCCTTAATGACAACACAGTTTACTACTACCGTTGTGGAGGACATGGTCCGGAATTCCAGTTTAAGACACCACCCTCCCAATTTCCCTTGTCATTGGCTGTTGTAGGTGATCTGGGGCAGACCAGTTGGACAACTTCGACACTTAATCACATTAAGCAGTGTGCACATGATATGCTTTTACTCCCTGGTGATCTCTCTTATGCGGATTATATGCAACATTTGTGGGATTCTTTTGGTACATTGGTGGAGCCACTTGCTAGCACCAGGCCCTGGATGGTGACAGAAGGAAATCATGAGAAGGAAAGGATACCGTTTTTTAAGTCTGGATTTCGATCATACAATGCACGATGGGAGGTGCCTTATGAAGAGAGCGAATCCACATCAAATCTCTACTACTCCTTCAAAGTTGCAGGGGTGCATGCTATAATGTTAGGTTCTTATACAGATTATGATGAAAGTTCAGATCAGTACGCTTGGCTTAAGGCTGATCTAGCTAAGGTTGACAGGAAAAGGACGCCATGGCTCATCGTATTGTTGCATGCACCATGGTATAATAGCAATTGGGCTCATCAAGGCGAAGGTGACAGTATGATGGCTGCAATGGAGCCTTTGCTCTATGCTGCTCATGTGGATATGGTAATCGCAGGTCATGTGCATGCTTATGAACGTGCGGAGCGAGTCTACAAGGGGGGACTTGATCCTTGTGGGGCTGTTCACATAACAATTGGGGATGGTGGAAACAGGGAAGGCTTGGCCCACAGGTACCGCAATCCGAAACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAATGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGATGATGTGTGGATAACGTC GCTGGCTGGTTCCGGGTGCATCCAGGACGGTAGTCATGAGTACAGGAAAATTCTGATGTCCCCTTAAGAACATCTGAACAGACATACAGACTACAGTTAGTAGCATAGTCTAAGTGCCTGCCATGTATATTGTATATATGTTTACGACTTGCTAAAATACAATCTCAGAAGCTCTTTTTTTCTGTATTTTGAATCTTGGCTAATCTGGAGATACCACTGTAGCTTGTCGACATATCTCTTGATGTATGCAACAATGTTTGTAGCCAGCCAAGTGAATGGCATTCTGAGGAATGCTTACCTTGTGTAACTGGACGACAGTCATGATATGAAACATATGTTATGT ] [+] EMBL CB640127 [ GCCGCTTCCGGGGCTCCCGTGGGCGAAGACTACGTCCAGCCGCCCGCGGCGGCGCGGCGCTGCGGCCTCCACCACCGGAAGGCCCTCCTCAACCTCTTCCCGTGGAGCAAGAAGAAGGACTCCTCTTCCGCCTCCGATCCGCAACAGGTGCACATTTCACTAGCTGGAGAAAAGCACATGAGAGTTACATTTGTCACTGATGATAACTCCGTCCCTTCAGTTGTAGACTATGGAACTGAAGCAGGCACATACACATCAACGTCTCAAGGAGAAAGCACATCATACAGCTACTTAATGTATAGTTCAAGAAAGATCCATCATGTTGTTATTGGGCCCCTTAATGACAACACAGTTTACTACTACCGTTGTGGAGGACATGGTCCGGAATTCCAGATTAAGAC ] [+] EMBL BE229559 [ GTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAATGCCACGSATGCTCACTGGACTTGGCACAGAAATGATGACGGAGAACCAGTGAGAACGGATGATGTGTGGATAACGTC GCTGGCTGGTTCCGGGTGCATCCAGGRCGGTAGTCATGAGTACAGGAAAATTCTGATGTCCCCTTAAGAACATCTGAACAGACATACAGACTACAGTTAGTAGCATAGTCTAAGTGCCTSCCATGTATATTGTATATATGTTTACGACTTGCTAAAATACAATCTCAGAAGCTCTTTTTTTCTGTATTTTGAATCTTGGCTAATCTGGAGATACCACTGTAGCTTGTCGACATATCTCTTGATGTATGC ACAATGTTTGTAGCCAGCCAAGTGAATGGCATTCTGRGGAATGCTYACCTTGTGT ACTGGGCGMCAGTCATGATATGAAACATATGTTATGTTAAAAAAAAAAAAAAA] [-] EMBL OSA309288 [ GACTTGGCACAGAAATGATGACGAAGAACCAGTGTGAACGGATGATGTGTGGATAACCTCCTGCTGGCTGGTTCCGGGTGCATCCAGGACGGTAGTCATGAGTACAGGAAAATTCTGATGTCCCCTTAAGAACATCTGAACAGACATACAGACTACAGTTAGTAGCATAGTCTAAGTGCCTGCCATGTATATTGTATATATGTTTACGACTTGCTAAAATACAATCTCAGAAGCTCTTTTTTACTGTATTTTGAATCTTGGCTAATCTGGAGATACTACTGTAGCTTGTCGACATATCTCTTGATGTATGCAACAATGTTTGTAGCCAGCCAAGTGAATCGGATTCTGAGGAATGCTTACCTTGTGTAACTGGACGACAGTCATGGTATGAAACATATGT ] consensusID : consensus_8397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [AAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACCGCAATCCGAAACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAATGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGATGATGTGTGGATAACGTCGCTGGCTGGTTCCGGGTGCATCCAGGACGGTA] [-] EMBL CA748458 [AAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACCGCAATCCGAAACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAATGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGATGATGTGTGGATAACGTCGCTGGCTGGTTCCGGGTGCATCCAGGACGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8397#0 GCGAGCCGGAGCGCGCAGGAGGCCTCCCATGGCCGTGCCTCCGCTTCTCCTCTTCCTCCT 60 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 GCTGCTCTCCTCGTTCTCCTCCTGTGCCGCCGCCGCTTCCGGGGCTCCCGTGGGCGAGGA 120 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 CTACGTCCGGCCGCCCGCGGCGGCGCGGCGCTGCGGCCTCCACCACCGGAAGGCCCTCCT 180 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 CAGCCTCTTCCCGTGGAGCAAGAAGAAGGACTCCTCTTCCGCCTCCGATCCGCAGCAGGT 240 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 GCACATTTCACTAGCTGGAGAAAAGCACATGAGAGTTACATTTGTCACTGATGATAACTC 300 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 CGTCCCTTCAGTTGTAGACTATGGAACTGAAGCAGGCACATACACATCAACGTCTCAAGG 360 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 AGAAAGCACATCATACAGCTACTTAATGTATAGTTCAGGAAAGATCCATCATGTTGTTAT 420 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 TGGGCCCCTTAATGACAACACAGTTTACTACTACCGTTGTGGAGGACATGGTCCGGAATT 480 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 CCAGTTTAAGACACCACCCTCCCAATTTCCCTTGTCATTGGCTGTTGTAGGTGATCTGGG 540 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 GCAGACCAGTTGGACAACTTCGACACTTAATCACATTAAGCAGTGTGCACATGATATGCT 600 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 TTTACTCCCTGGTGATCTCTCTTATGCGGATTATATGCAACATTTGTGGGATTCTTTTGG 660 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 TACATTGGTGGAGCCACTTGCTAGCACCAGGCCCTGGATGGTGACAGAAGGAAATCATGA 720 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 GAAGGAAAGGATACCGTTTTTTAAGTCTGGATTTCGATCATACAATGCACGATGGGAGGT 780 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 GCCTTATGAAGAGAGCGAATCCACATCAAATCTCTACTACTCCTTCAAAGTTGCAGGGGT 840 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 GCATGCTATAATGTTAGGTTCTTATACAGATTATGATGAAAGTTCAGATCAGTACGCTTG 900 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 GCTTAAGGCTGATCTAGCTAAGGTTGACAGGAAAAGGACGCCATGGCTCATCGTATTGTT 960 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 GCATGCACCATGGTATAATAGCAATTGGGCTCATCAAGGCGAAGGTGACAGTATGATGGC 1020 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 TGCAATGGAGCCTTTGCTCTATGCTGCTCATGTGGATATGGTAATCGCAGGTCATGTGCA 1080 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 TGCTTATGAACGTGCGGAGCGAGTCTACAAGGGGGGACTTGATCCTTGTGGGGCTGTTCA 1140 consensus_8397#1 -------------------------------------------------AAGGAAATTAA 11 ** ** * consensus_8397#0 CATAACAATTGGGGATGGTGGAAACAGGGAAGGCTTGGCCCACAGGTACCGCAATCCGAA 1200 consensus_8397#1 ACTGATTTAT-----TACTTGTTCCATTAAAACCATCACACTCGGGTACCGCAATCCGAA 66 * * * * * * ** ** * * * * * **************** consensus_8397#0 ACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAA 1260 consensus_8397#1 ACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAA 126 ************************************************************ consensus_8397#0 TGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGA 1320 consensus_8397#1 TGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGA 186 ************************************************************ consensus_8397#0 TGATGTGTGGATAACGTCGCTGGCTGGTTCCGGGTGCATCCAGGACGGTAGTCATGAGTA 1380 consensus_8397#1 TGATGTGTGGATAACGTCGCTGGCTGGTTCCGGGTGCATCCAGGACGGTA---------- 236 ************************************************** consensus_8397#0 CAGGAAAATTCTGATGTCCCCTTAAGAACATCTGAACAGACATACAGACTACAGTTAGTA 1440 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 GCATAGTCTAAGTGCCTGCCATGTATATTGTATATATGTTTACGACTTGCTAAAATACAA 1500 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 TCTCAGAAGCTCTTTTTTTCTGTATTTTGAATCTTGGCTAATCTGGAGATACCACTGTAG 1560 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 CTTGTCGACATATCTCTTGATGTATGCAACAATGTTTGTAGCCAGCCAAGTGAATGGCAT 1620 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 TCTGAGGAATGCTTACCTTGTGTAACTGGACGACAGTCATGATATGAAACATATGTTATG 1680 consensus_8397#1 ------------------------------------------------------------ consensus_8397#0 TTAAAAAAAAAAAAAAA 1697 consensus_8397#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||