These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8417#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1853 fasta sequence [AGCTTTCCCCTCCCAATTAATTAAGTTTAGCTCTTATCAGAGCGAGAGAGAGAGAGAGAGAGGGAAGAAGAAGAAGTGGAAGTGGTATGTATGTGCCCATGTCCATTGCCGCAGAAACAAACTGTAGCAGCAGCAGCAGCAGCTAGTGAAGTACTACAGTACAGTAGTGAGGACTTAATCAAACGGGGCGCGCGGGGTGCCCCCTAGCTCTCCTCATTCCACCACCATGCCCACCCCGCCATCGCCATGCCTCTTCTTCCTCTTCCTCCTCTTCTTCATGTGGTCGTCTCACTCTCACCTTGGCGCCGCCTCCGACGCGGACGCGCTGCTCGCCCTCAAGTCCGCCCTCGACCGCTCCGACCGCCTCCCCTGGCGCCGCGACACCGCCCCCGCCTTGTGCTCCTCCTGGCTCGGCGTGCGCCAGTGCTCCCAACCTCCCCGGGACAGGAGGGTCACCAAGCTCGTCCTCGAGAACCTCAACCTCACCGGCGTCCTCACCGCCACCCTCCTCGCCCCGCTCTCCGAGCTGCGCGTCCTCAGCCTCAAGTCCAACGCCCTCACCGGCCCCATCCCCGACGCCCTCCCCGCCGCCCTCCCTAACCTCAAGCTGCTCTACCTCTCCGCCAACCGCCTCCAGGGCCGCATCCCGCCCACCCTCGCCCTCCTCCACCGCGCCACCGTCCTCGTCCTCTCCTCCAACCTCCTCCATGGCGCTGAGGGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAGCCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGCACTGGACGTCGTGCATGAAGATCGCGGAGGATGTCGCCGCCGGGCTGGTGCACCTGCACCAGTCGCCGCCGGCTGGCATCGTGCACGGCAACCTCAAGCCCTCCAACGTCCTCCTCGGCCCCGACTTCGAATCGTGCCTCACCGATTACGGTCTGGTGCCCACGCTGCTCCCCTCCCACGCCGATCTCGCCTCCTCCACGTCCGTCCTATACCGAGCGCCGGAAACTCGCACCGCCCATGCCTTCACGCCGGCGTCCGACGTGTACAGCTTCGGCGTGCTCCTCCTGGAGCTGCTCACCGGGAAGGCGCCGTTCCAGGACCTGATGGAGATGCACAGCGATGACATCCCGAGCTGGGTGCGGGCAGTGCGTGAGGAAGAGACGGAGTCCGGCGGGGAGTCCGCGTCCGCTGGCGGCACGGAGGAGAAGCTCGGTGCGCTGATCAGCATTGCGGCGGCCTGCGTGGTGGCGGACCCGGCGAGGCGGCCAACCACACCGGAGGTGCTACGGATGGTGAGGGAGGCAAGGGCGGAGGCAATGTCGTCGTCGAACAGCAGCGACCGGTCACCAGCGCGGTGGTCAGACGCCGTGCAGGTGCAGATGGGCATGGGGGTGCCG-CGAGATCAGGGAGAGCT-AGGAGGACTCA-CCTG-ATCG-ATCGATCAGC-AGC-TG-ATC-TCATCCTGATC-AGC-AGCTGATC-ATCGCCTGGC-TGGCCGGCTTGTTGTTACTTTACTTCATGTACCGTAGCAGCAAAAAAAGTGTAGTTACCACTCAATTTGTCTTGGCTCAAAGAATGACTCATTCTTCAGGCAACACTTTTTAAATACCAGGGGTCTTTGATTTGGGACTTGTGTAGGTTTTTAGCAGGGAAGGGTGGGGCATTGGGAGATACTCCTAGCTTAGATAGGTTCAGAGATGAAGATTCTCTGGGCTGGATCTGTCTGTAAATCTTTTTTGGATTGTTGTAAACTTGTCCTTTTTATTTTTTCCGGAGTGGAGCTAAACTGGTTTATGTGTCAAAAA] [+] EMBL AK101172 [AGCTTTCCCCTCCCAATTAATTAAGTTTAGCTCTTATCAGAGCGAGAGAGAGAGAGAGAGAGGGAAGAAGAAGAAGTGGAAGTGGTATGTATGTGCCCATGTCCATTGCCGCAGAAACAAACTGTAGCAGCAGCAGCAGCAGCTAGTGAAGTACTACAGTACAGTAGTGAGGACTTAATCAAACGGGGCGCGCGGGGTGCCCCCTAGCTCTCCTCATTCCACCACCATGCCCACCCCGCCATCGCCATGCCTCTTCTTCCTCTTCCTCCTCTTCTTCATGTGGTCGTCTCACTCTCACCTTGGCGCCGCCTCCGACGCGGACGCGCTGCTCGCCCTCAAGTCCGCCCTCGACCGCTCCGACCGCCTCCCCTGGCGCCGCGACACCGCCCCCGCCTTGTGCTCCTCCTGGCTCGGCGTGCGCCAGTGCTCCCAACCTCCCCGGGACAGGAGGGTCACCAAGCTCGTCCTCGAGAACCTCAACCTCACCGGCGTCCTCACCGCCACCCTCCTCGCCCCGCTCTCCGAGCTGCGCGTCCTCAGCCTCAAGTCCAACGCCCTCACCGGCCCCATCCCCGACGCCCTCCCCGCCGCCCTCCCTAACCTCAAGCTGCTCTACCTCTCCGCCAACCGCCTCCAGGGCCGCATCCCGCCCACCCTCGCCCTCCTCCACCGCGCCACCGTCCTCGTCCTCTCCTCCAACCTCCTCCATGGCGCTGAGGGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAGCCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGCACTGGACGTCGTGCATGAAGATCGCGGAGGATGTCGCCGCCGGGCTGGTGCACCTGCACCAGTCGCCGCCGGCTGGCATCGTGCACGGCAACCTCAAGCCCTCCAACGTCCTCCTCGGCCCCGACTTCGAATCGTGCCTCACCGATTACGGTCTGGTGCCCACGCTGCTCCCCTCCCACGCCGATCTCGCCTCCTCCACGTCCGTCCTATACCGAGCGCCGGAAACTCGCACCGCCCATGCCTTCACGCCGGCGTCCGACGTGTACAGCTTCGGCGTGCTCCTCCTGGAGCTGCTCACCGGGAAGGCGCCGTTCCAGGACCTGATGGAGATGCACAGCGATGACATCCCGAGCTGGGTGCGGGCAGTGCGTGAGGAAGAGACGGAGTCCGGCGGGGAGTCCGCGTCCGCTGGCGGCACGGAGGAGAAGCTCGGTGCGCTGATCAGCATTGCGGCGGCCTGCGTGGTGGCGGACCCGGCGAGGCGGCCAACCACACCGGAGGTGCTACGGATGGTGAGGGAGGCAAGGGCGGAGGCAATGTCGTCGTCGAACAGCAGCGACCGGTCACCAGCGCGGTGGTCAGACGCCGTGCAGGTGCAGATGGGCATGGGGGTGCCG CGAGATCAGGGAGAGCT AGGAGGACTCA CCTG ATCG ATCGATCAGC AGC TG ATC TCATCCTGATC AGC AGCTGATC ATCGCCTGGC TGGCCGGCTTGTTGTTACTTTACTTCATGTACCGTAGCAGCAAAAAAAGTGTAGTTACCACTCAATTTGTCTTGGCTCAAAGAATGACTCATTCTTCAGGCAACACTTTTTAAATACCAGGGGTCTTTGATTTGGGACTTGTGTAGGTTTTTAGCAGGGAAGGGTGGGGCATTGGGAGATACTCCTAGCTTAGATAGGTTCAGAGATGAAGATTCTCTGGGCTGGATCTGTCTGTAAATCTTTTTTGGATTGTTGTAAACTTGTCCTTTTTATTTTTTCCGGAGTGGAGCTAAACTGG ] [+] EMBL OSS4050A [ agnGAGAGAGAGAGAGAGAGAGAGAGGGAAGAAGAAGAAGTGGNAGTGGTATGTATGTNCCCATGNCCATTGCCGCAGNAACAAACTNTAGCAGCAGCAGCAGCAGCTAGTGAAGTACTACAGTACAGTAGTGAGGACTTAATCAAACGGGGNGCGCGGGGTGCCCCCTAGCTCTCCTCATTCCACCACC ] [+] EMBL AU030457 [ ACACCGGAGGTGCTACGGATGGTGAGGGAGGCAAGGGCGGAGGCAATGTCGTCGTCGAACAGCAGCGACCGGTCACCAGCGCGGTGGTCAGACGCCGTGCAGGTGCAGATGGGCATGGGGGTGCCG CGAGATCAGGGAGAGCT AGGAGGACTCA CCTG ATCG ATCGATCAGC AGC TG ATC TCATCCTGATC AGC AGCTGATC ATCNCCTGGC TGGCCGGCTTGTTGTTACTTTACTTCATGTACCGTAGCAGCAAAAAAAGTGTAGTTACCACTCAATTTGTCTTGGCTCAAAGAATGACTCATTCTTCAGGCAACACTTTTTAAATACCAGGGGTCTTTGATTTGGGACTTGTGTAGGTTTTTAGCAGGGAAGGGTGGGGCATTGGGAGATACTCCTAGCTTAGATAGGTTCAGAGATGAAGATTCTCTGGGCTGGATCTGTCTGTAAATCTTTTTTGGATTGTTGTAAACTTGTCCTTTTTATTTTTTCCGGAGTGGAGCTAAACTGGTTTATGTGTCAAAAA] [+] EMBL AU161666 [ GGTTCCGCCGAGATCAGGGAGAGCTAAGGAGGACTCANCCTGAATCGAATCGATCAGCAAGCTTGAATCTTCATCCTGATCAAGCAAGCTGATCAATCGCCTGGCTTGGCCGGCTTGTTGTTACTTTACTTCATGTACCGTAGCAGCAAAAAAAGTGTAGTTACCACTCAATTTGTCTTGGCTCAAAGAATGACTCATTCTTCAGGCAACACTTTTTAAATACCAGGGGTCTTTGATTTGGGACTTGTGTAGGTTTTTAGCAGGGAAGGGTGGGGCATTGGGAGATACTCCTAGCTTAGATAGGTTCAGAGATGAAGATTCTCTGGGCTGGATCTGTCTGTAAATCTTTTTTGGATTGTTGTAAACTTGTCCTTTTTATTTTTTCCGGAGTGGAGCTAAACTGGTTTATGTGTCAAA ] consensusID : consensus_8417#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence [TNACNGTGAAGNGNATGCGNGAACCGGCGGCGNGGGCGGCGGACTTNGGCGGCGAGCGGAGGAGCTGGGCCGCCTCCGCCACCCAAACGTGGTGGCGCTGAGGGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAGCCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGC] [+] EMBL AU065706 [TNACNGTGAAGNGNATGCGNGAACCGGCGGCGNGGGCGGCGGACTTNGGCGGCGAGCGGAGGAGCTGGGCCGCCTCCGCCACCCAAACGTGGTGGCGCTGAGGGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAGCCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8417#0 AGCTTTCCCCTCCCAATTAATTAAGTTTAGCTCTTATCAGAGCGAGAGAGAGAGAGAGAG 60 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 AGGGAAGAAGAAGAAGTGGAAGTGGTATGTATGTGCCCATGTCCATTGCCGCAGAAACAA 120 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 ACTGTAGCAGCAGCAGCAGCAGCTAGTGAAGTACTACAGTACAGTAGTGAGGACTTAATC 180 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 AAACGGGGCGCGCGGGGTGCCCCCTAGCTCTCCTCATTCCACCACCATGCCCACCCCGCC 240 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 ATCGCCATGCCTCTTCTTCCTCTTCCTCCTCTTCTTCATGTGGTCGTCTCACTCTCACCT 300 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 TGGCGCCGCCTCCGACGCGGACGCGCTGCTCGCCCTCAAGTCCGCCCTCGACCGCTCCGA 360 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 CCGCCTCCCCTGGCGCCGCGACACCGCCCCCGCCTTGTGCTCCTCCTGGCTCGGCGTGCG 420 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 CCAGTGCTCCCAACCTCCCCGGGACAGGAGGGTCACCAAGCTCGTCCTCGAGAACCTCAA 480 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 CCTCACCGGCGTCCTCACCGCCACCCTCCTCGCCCCGCTCTCCGAGCTGCGCGTCCTCAG 540 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 CCTCAAGTCCAACGCCCTCACCGGCCCCATCCCCGACGCCCTCCCCGCCGCCCTCCCTAA 600 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 CCTCAAGCTGCTCTACCTCTCCGCCAACCGCCTCCAGGGCCGCATCCCGCCCACCCTCGC 660 consensus_8417#1 -----------------TNACNGTGAAGNGNATGCGNGAACCGGCGGCGNGGGCGG-CGG 42 * * * ** * * * * * ** * ** consensus_8417#0 CCTCCTCCACCGCGCCACCGTCCTCGTCCTCTCCTCCAACCTC--CTCCATGGCGCTGAG 718 consensus_8417#1 ACTTNGGCGGCGAGCGGAGGAGCTGGGCCGCCTCCGCCACCCAAACGTGGTGGCGCTGAG 102 ** * ** ** * ** * ** * * * *** * ********** consensus_8417#0 GGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAG 778 consensus_8417#1 GGCCTACTTCCAGGCCAAGGAGGAGCGACTCCTCGTCTACGATTACTACCCCAATGGCAG 162 ************************************************************ consensus_8417#0 CCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGCA 838 consensus_8417#1 CCTCTTCTCCCTCCTCCACGGGTCCAGCAGCCGGACGTCGAGCAAGGGGAAGCCCCTGC- 221 *********************************************************** consensus_8417#0 CTGGACGTCGTGCATGAAGATCGCGGAGGATGTCGCCGCCGGGCTGGTGCACCTGCACCA 898 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 GTCGCCGCCGGCTGGCATCGTGCACGGCAACCTCAAGCCCTCCAACGTCCTCCTCGGCCC 958 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 CGACTTCGAATCGTGCCTCACCGATTACGGTCTGGTGCCCACGCTGCTCCCCTCCCACGC 1018 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 CGATCTCGCCTCCTCCACGTCCGTCCTATACCGAGCGCCGGAAACTCGCACCGCCCATGC 1078 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 CTTCACGCCGGCGTCCGACGTGTACAGCTTCGGCGTGCTCCTCCTGGAGCTGCTCACCGG 1138 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 GAAGGCGCCGTTCCAGGACCTGATGGAGATGCACAGCGATGACATCCCGAGCTGGGTGCG 1198 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 GGCAGTGCGTGAGGAAGAGACGGAGTCCGGCGGGGAGTCCGCGTCCGCTGGCGGCACGGA 1258 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 GGAGAAGCTCGGTGCGCTGATCAGCATTGCGGCGGCCTGCGTGGTGGCGGACCCGGCGAG 1318 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 GCGGCCAACCACACCGGAGGTGCTACGGATGGTGAGGGAGGCAAGGGCGGAGGCAATGTC 1378 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 GTCGTCGAACAGCAGCGACCGGTCACCAGCGCGGTGGTCAGACGCCGTGCAGGTGCAGAT 1438 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 GGGCATGGGGGTGCCGCGAGATCAGGGAGAGCTAGGAGGACTCACCTGATCGATCGATCA 1498 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 GCAGCTGATCTCATCCTGATCAGCAGCTGATCATCGCCTGGCTGGCCGGCTTGTTGTTAC 1558 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 TTTACTTCATGTACCGTAGCAGCAAAAAAAGTGTAGTTACCACTCAATTTGTCTTGGCTC 1618 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 AAAGAATGACTCATTCTTCAGGCAACACTTTTTAAATACCAGGGGTCTTTGATTTGGGAC 1678 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 TTGTGTAGGTTTTTAGCAGGGAAGGGTGGGGCATTGGGAGATACTCCTAGCTTAGATAGG 1738 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 TTCAGAGATGAAGATTCTCTGGGCTGGATCTGTCTGTAAATCTTTTTTGGATTGTTGTAA 1798 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 ACTTGTCCTTTTTATTTTTTCCGGAGTGGAGCTAAACTGGTTTATGTGTCAAAAA 1853 consensus_8417#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||