These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 654 fasta sequence [GCACCGAGCAGAGAGAAAAGTGTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGCGACGGTGGTGAGGCTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTCAACGTGCCGACGGTGGTGAGCCC-GCACGCCATCGGCGGCGG-GATGTGCCCGGCGCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCAGCTNGTGTATCACANAGGACCACGGGGGGTANTCAATGTGCCCCCGGGGTGAGCTGCCCTGTTCTCCGCCGGTGTTTTGGCCCCCTCGAGGTTGCGAGCCCGGCCCTATGGGGGTGCCAACCCTCGCCGGCACCGATCA] [+] EMBL BE230002 [GCACCGAGCAGAGAGAAAAGTGTGCACACAGCTAGCATGGCGAACCCCCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGTATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTTTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCATGGACGGGGGCCGGAGCGACACCG ] [+] EMBL CA754447 [ GCACACAGCTAGCATGGCGAACAAGCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGCGACGGTGGTGAGGCTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTCAACGTGCCGACGGTGGTGAGCCC GCACGCCATCGGCGGCGG GATGTGCCCGGCGCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCA ] [+] EMBL CA753850 [ CAGCTAGCATGGCGAACAAGCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCTGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGCGACGGTGGTGAGGCTGTCGTTCAACGGCGCCGGCGGNCTGGCGGAGTACAGCGTCAATCTCGGGGAAGGGTTCAACGTGCCGACGNTGGTGAGCCCNCCAC CCATCGGAGGCGGTGATGTTTCTGGTGCTGCGCTGCTCGGTCGATCTCAACTCCGCCTGCCCGGCAGCCNAGCTNGTGTATCACANAGGACCACGGGGGGTANTCAATGTGCCCCCGGGGTGAGCTGCCCTGTTCTCCGCCGGTGTTTTGGCCCCCTCGAGGTTGCGAGCCCGGCCCTATGGGGGTGCCAACCCTCGCCGGCACCGATCA] [+] EMBL CF196996 [ AACGTGCCGACGGTGGTGAGCCC GCACGCCATCGGCGGCGG GATGTGCCCGGCGCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCAGCNCGTGTAcgg ] consensusID : consensus_8478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [CAGTTCATCACAGAGAGAAAAGTTTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGGCGACGGTGGTGAGGCTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTCAACGTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGCGGGATGTGCCCGGCGCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCA] [+] EMBL AK066624 [CAGTTCATCACAGAGAGAAAAGTTTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGGCGACGGTGGTGAGGCTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTCAACGTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGCGGGATGTGCCCGGCGCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8478#0 --GCACCGAGCAGAGAGAAAAGTGTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCG 58 consensus_8478#1 CAGTTCATCACAGAGAGAAAAGTTTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCG 60 * * ************* ************************************ consensus_8478#0 CCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGG 118 consensus_8478#1 CCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGG 120 ************************************************************ consensus_8478#0 CGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGT 178 consensus_8478#1 CGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGT 180 ************************************************************ consensus_8478#0 CGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCG 238 consensus_8478#1 CGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCG 240 ************************************************************ consensus_8478#0 GGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACAT 298 consensus_8478#1 GGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACAT 300 ************************************************************ consensus_8478#0 GGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGG-CGACGGTGGTGAGG 357 consensus_8478#1 GGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGGCGACGGTGGTGAGG 360 ********************************************* ************** consensus_8478#0 CTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTC 417 consensus_8478#1 CTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTC 420 ************************************************************ consensus_8478#0 AACGTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGCGGGATGTGCCCGGCGCTGGGC 477 consensus_8478#1 AACGTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGCGGGATGTGCCCGGCGCTGGGC 480 ************************************************************ consensus_8478#0 TGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCAGCTNGTGTATCACANAGGACCA 537 consensus_8478#1 TGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCA---------------------- 518 ************************************** consensus_8478#0 CGGGGGGTANTCAATGTGCCCCCGGGGTGAGCTGCCCTGTTCTCCGCCGGTGTTTTGGCC 597 consensus_8478#1 ------------------------------------------------------------ consensus_8478#0 CCCTCGAGGTTGCGAGCCCGGCCCTATGGGGGTGCCAACCCTCGCCGGCACCGATCA 654 consensus_8478#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||