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Oryza sativa
cluster # 8496 cluster # 8496       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8496#0 length = 2318 sequences # 2  
consensus_8496#1 length = 887 sequences # 2  
consensus_8496#2 length = 749 sequences # 1  

consensusID : consensus_8496#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2318
fasta sequence
                              [CTTCTCCGGCGAGCCAGAGGGGCGAGAGCGGCGGCGGGGTCGTAGGCGGCGGTGTGTGGCGATCCGGCGAAGGGAATCTCGCACGGCGGCGCGGCTGCTGAGGGGGAACACCCTAATCCCCTTCTCTCCCCGACCCCTCTCCCGGCGACGCGAGTGAGTGGCTGGCGGCAAGCGCCGAGCGGCTCCAGCTTCACTGGCTGGGGGGCGCACCCGAAGACGGCGCCAAGCCATCGGCGGTCCGGCAAAGCACCGAGCCGACGGGGGAGGGGGGGAGGTGCCAAAAGTGGCAGCCCAAGCCGATGCTTCCCGTCTCCGGTGAGGCGGCGACGGTGGGGAAGCTCCAAGACGGCGCGAGCGGTGGTGAACCGGCGCGACCCCGAGGACGCCGGAGAGCTTCAAGTCTGGTAAGTTTCAGAAACCCGAAGCTCAAATTTCTTGATTCGGGTTTTGGGGCTTATTAGGGTTCTCCAGCCGAATTAGGGTTCTTCAATTTGGGAATTTATTCGAATTAGGGTTTCTGAGGTGTGGATTTTTGGAATTTCAATCTTGTTTATCCCAATCTCCTTTTTTTCTGAGTTGAACAGATTGGGGAAAATTTTGGAAAGTTCAATCTAGTATTTTGTTGGGGGGTGGGGGGTTGGGGCATACCACCTAGTACTAGGTAGGAACTGTAACATATGTTTCAGCCTGGTTTGCCAGACAGAACAACAAAAACTTATATTAGGAAATCAATAGTTGTAGTGTACAAAAAAAAAGTTATAACTCAAGTTGCATTGCACAAATTTATAATTGAAGTTGCACATGATTTTAAAATGGCAACTACAACAATTAGGGAATGCAACTTTGCTATATATGAGGCAACTATTAGTCCCATACTTTAAAAATCACAAAATAATAAGGATTGCTTTTGGGCTGCAGGGTGCAAATAGCTGAAACGCACAAGAAAGAATCCCATTTGTTGGAATGGATTAGGTAATGTGAAAAACTAAGAAAAACCCGATCACCGCTACACAAATAGAAAAACAAAGATGTGTGTTTTTATTATGCTAGCTCTAGATTTTCAATGTTTACATCACAAGCAATCCCGTACTGAGCCAATACTGCAACTAACATATAAATGCACTTAATCGAAAAGAAAAACATGTTCTCTGAACCGCACAGAATTCAACGCATACTGAGGGTTAGATCGCATACACAGAATCACAGATACACATGGACTTTCCTTATCAATTTGTCTAGTCCTAGCATTTTTTTCAGGCACACGGCCTAGTAACACTTGCTACATACTCACGTATCATAATTTTCCAGTACAAGCCATTTCATGCCATTGCAAATCGGATGGAAGCAACAGCAAGAGAGGCAAAGTGATAAAAAAAATAATAGTGTCCTACTCTTCCAAATTCATAAAAGCATGGTCTATATAAGCATATAAATACATCTAGATTGATTGAGTTAAATAAAAAACAAAGTAACAATAAGTTGCACTTTCCATATGATGCAAGTATAGGTGGCTAACAGTAAAAAAAAAAGGATACATTCAACAAAACCTTTATTATCTTTTTGTACACATGTTTGTTGTCCCTTCTTCCTTTTTATGGACTTCCTGATATGAAGAATTGGAAAGGAAAATTACCATTGTTCTGAATCCGCAAAGAGAAGTTCAGAACCAACAGATCCATCATCCTACAAATGCAAATTCAAATACAAATGCTGTATTAGCTTAGATGGGTGAGATCACATACTTATCATAGTAAACCTATTCTTTCTCCTGTCAAGACGTGGCTTCTTCCTTGCTGCTACAGGGCAACAGCAAATCATTACGTTCGTTCCCATCCATCTGCTGAGTGGCGTCTCCTCATATATCCGGGCCATCCGTTTGTTTATTAATATGTCCAGTACTAACTTCTTTTAGGCAAGCATAATAAAACCTACTAGCACTTGCAATATATCACCAGCTTGATTCCCAGTATTAGTTGGTTCATGCCATTGCATATTGGATAAAAGCTGCATATACAGAAGAAAATCGAGATAAATAGTGTTCAACTCTTCCAGAATCACAAAAATAGTCTCCAACTTTTATGTACAAAAAGGTGTTCATTCCCAGTAAAAATTGCTAGTATATGTACAGTCTACCAAACACAACTTTATCCCCGTCAAAACAACTTTGTATTCATCTCATAGCATAACAAAAAAAGTGCACGCACACAGAGATTTCAAAAGCACTGGACTGTGTTAGAGATACAGAGCGCTTAAAGTTCAGACTGATAGGTTTCAAAACCGTGCACAACTTCACAGAGTACAGACTAATTCACACAGAC]

[+] EMBL AK063485             [CTTCTCCGGCGAGCCAGAGGGGCGAGAGCGGCGGCGGGGTCGTAGGCGGCGGTGTGTGGCGATCCGGCGAAGGGAATCTCGCACGGCGGCGCGGCTGCTGAGGGGGAACACCCTAATCCCCTTCTCTCCCCGACCCCTCTCCCGGCGACGCGAGTGAGTGGCTGGCGGCAAGCGCCGAGCGGCTCCAGCTTCACTGGCTGGGGGGCGCACCCGAAGACGGCGCCAAGCCATCGGCGGTCCGGCAAAGCACCGAGCCGACGGGGGAGGGGGGGAGGTGCCAAAAGTGGCAGCCCAAGCCGATGCTTCCCGTCTCCGGTGAGGCGGCGACGGTGGGGAAGCTCCAAGACGGCGCGAGCGGTGGTGAACCGGCGCGACCCCGAGGACGCCGGAGAGCTTCAAGTCTGGTAAGTTTCAGAAACCCGAAGCTCAAATTTCTTGATTCGGGTTTTGGGGCTTATTAGGGTTCTCCAGCCGAATTAGGGTTCTTCAATTTGGGAATTTATTCGAATTAGGGTTTCTGAGGTGTGGATTTTTGGAATTTCAATCTTGTTTATCCCAATCTCCTTTTTTTCTGAGTTGAACAGATTGGGGAAAATTTTGGAAAGTTCAATCTAGTATTTTGTTGGGGGGTGGGGGGTTGGGGCATACCACCTAGTACTAGGTAGGAACTGTAACATATGTTTCAGCCTGGTTTGCCAGACAGAACAACAAAAACTTATATTAGGAAATCAATAGTTGTAGTGTACAAAAAAAAAGTTATAACTCAAGTTGCATTGCACAAATTTATAATTGAAGTTGCACATGATTTTAAAATGGCAACTACAACAATTAGGGAATGCAACTTTGCTATATATGAGGCAACTATTAGTCCCATACTTTAAAAATCACAAAATAATAAGGATTGCTTTTGGGCTGCAGGGTGCAAATAGCTGAAACGCACAAGAAAGAATCCCATTTGTTGGAATGGATTAGGTAATGTGAAAAACTAAGAAAAACCCGATCACCGCTACACAAATAGAAAAACAAAGATGTGTGTTTTTATTATGCTAGCTCTAGATTTTCAATGTTTACATCACAAGCAATCCCGTACTGAGCCAATACTGCAACTAACATATAAATGCACTTAATCGAAAAGAAAAACATGTTCTCTGAACCGCACAGAATTCAACGCATACTGAGGGTTAGATCGCATACACAGAATCACAGATACACATGGACTTTCCTTATCAATTTGTCTAGTCCTAGCATTTTTTTCAGGCACACGGCCTAGTAACACTTGCTACATACTCACGTATCATAATTTTCCAGTACAAGCCATTTCATGCCATTGCAAATCGGATGGAAGCAACAGCAAGAGAGGCAAAGTGATAAAAAAAATAATAGTGTCCTACTCTTCCAAATTCATAAAAGCATGGTCTATATAAGCATATAAATACATCTAGATTGATTGAGTTAAATAAAAAACAAAGTAACAATAAGTTGCACTTTCCATATGATGCAAGTATAGGTGGCTAACAGTAAAAAAAAAAGGATACATTCAACAAAACCTTTATTATCTTTTTGTACACATGTTTGTTGTCCCTTCTTCCTTTTTATGGACTTCCTGATATGAAGAATTGGAAAGGAAAATTACCATTGTTCTGAATCCGCAAAGAGAAGTTCAGAACCAACAGATCCATCATCCTACAAATGCAAATTCAAATACAAATGCTGTATTAGCTTAGATGGGTGAGATCACATACTTATCATAGTAAACCTATTCTTTCTCCTGTCAAGACGTGGCTTCTTCCTTGCTGCTACAGGGCAACAGCAAATCATTACGTTCGTTCCCATCCATCTGCTGAGTGGCGTCTCCTCATATATCCGGGCCATCCGTTTGTTTATTAATATGTCCAGTACTAACTTCTTTTAGGCAAGCATAATAAAACCTACTAGCACTTGCAATATATCACCAGCTTGATTCCCAGTATTAGTTGGTTCATGCCATTGCATATTGGATAAAAGCTGCATATACAGAAGAAAATCGAGATAAATAGTGTTCAACTCTTCCAGAATCACAAAAATAGTCTCCAACTTTTATGTACAAAAAGGTGTTCATTCCCAGTAAAAATTGCTAGTATATGTACAGTCTACCAAACACAACTTTATCCCCGTCAAAACAACTTTGTATTCATCTCATAGCATAACAAAAAAAGTGCACGCACACAGAGATTTCAAAAGCACTGGACTGTGTTAGAGATACAGAGCGCTTAAAGTTCAGACTGATAGGTTTCAAAACCGTGCACAACTTCACAGAGTACAGACTAATTCACACAGAC]
[-] EMBL AF522007             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTGCAACTAACATATAAATGCACTTAATCGAAAAGAAAAACATGTTCTCTGAACCGCACAGAATTCAACGCATACTGAGGGTTAGATCGCATACACAGAATCACAGATACACATGGACTTTCCTTATCAATTTGTCTAGTCTTAGCATTTTTTTCAGGCACACGGCCTAGTAACACTTGCTACATACTCACGTATCATAATTTTCCAGTACAAGCCATTTCATGCCATTGCAAATCGGATGGAAGCAACAGCAAGAGAGGCAAAGTGATAAAAAAAATAATAGCGTCCAACTCTTCCAAATTCATAAAAGCATGGTCTATATAAGCATATAAATACATCTAGATTGATTGAGTTAAATAAAAAACAAAGTAATAATAAGTTGCACTTTCCGTATGGTGCAAGTATCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]


>consensus_8496#0 CTTCTCCGGCGAGCCAGAGGGGCGAGAGCGGCGGCGGGGTCGTAGGCGGCGGTGTGTGGC GATCCGGCGAAGGGAATCTCGCACGGCGGCGCGGCTGCTGAGGGGGAACACCCTAATCCC CTTCTCTCCCCGACCCCTCTCCCGGCGACGCGAGTGAGTGGCTGGCGGCAAGCGCCGAGC GGCTCCAGCTTCACTGGCTGGGGGGCGCACCCGAAGACGGCGCCAAGCCATCGGCGGTCC GGCAAAGCACCGAGCCGACGGGGGAGGGGGGGAGGTGCCAAAAGTGGCAGCCCAAGCCGA TGCTTCCCGTCTCCGGTGAGGCGGCGACGGTGGGGAAGCTCCAAGACGGCGCGAGCGGTG GTGAACCGGCGCGACCCCGAGGACGCCGGAGAGCTTCAAGTCTGGTAAGTTTCAGAAACC CGAAGCTCAAATTTCTTGATTCGGGTTTTGGGGCTTATTAGGGTTCTCCAGCCGAATTAG GGTTCTTCAATTTGGGAATTTATTCGAATTAGGGTTTCTGAGGTGTGGATTTTTGGAATT TCAATCTTGTTTATCCCAATCTCCTTTTTTTCTGAGTTGAACAGATTGGGGAAAATTTTG GAAAGTTCAATCTAGTATTTTGTTGGGGGGTGGGGGGTTGGGGCATACCACCTAGTACTA GGTAGGAACTGTAACATATGTTTCAGCCTGGTTTGCCAGACAGAACAACAAAAACTTATA TTAGGAAATCAATAGTTGTAGTGTACAAAAAAAAAGTTATAACTCAAGTTGCATTGCACA AATTTATAATTGAAGTTGCACATGATTTTAAAATGGCAACTACAACAATTAGGGAATGCA ACTTTGCTATATATGAGGCAACTATTAGTCCCATACTTTAAAAATCACAAAATAATAAGG ATTGCTTTTGGGCTGCAGGGTGCAAATAGCTGAAACGCACAAGAAAGAATCCCATTTGTT GGAATGGATTAGGTAATGTGAAAAACTAAGAAAAACCCGATCACCGCTACACAAATAGAA AAACAAAGATGTGTGTTTTTATTATGCTAGCTCTAGATTTTCAATGTTTACATCACAAGC AATCCCGTACTGAGCCAATACTGCAACTAACATATAAATGCACTTAATCGAAAAGAAAAA CATGTTCTCTGAACCGCACAGAATTCAACGCATACTGAGGGTTAGATCGCATACACAGAA TCACAGATACACATGGACTTTCCTTATCAATTTGTCTAGTCCTAGCATTTTTTTCAGGCA CACGGCCTAGTAACACTTGCTACATACTCACGTATCATAATTTTCCAGTACAAGCCATTT CATGCCATTGCAAATCGGATGGAAGCAACAGCAAGAGAGGCAAAGTGATAAAAAAAATAA TAGTGTCCTACTCTTCCAAATTCATAAAAGCATGGTCTATATAAGCATATAAATACATCT AGATTGATTGAGTTAAATAAAAAACAAAGTAACAATAAGTTGCACTTTCCATATGATGCA AGTATAGGTGGCTAACAGTAAAAAAAAAAGGATACATTCAACAAAACCTTTATTATCTTT TTGTACACATGTTTGTTGTCCCTTCTTCCTTTTTATGGACTTCCTGATATGAAGAATTGG AAAGGAAAATTACCATTGTTCTGAATCCGCAAAGAGAAGTTCAGAACCAACAGATCCATC ATCCTACAAATGCAAATTCAAATACAAATGCTGTATTAGCTTAGATGGGTGAGATCACAT ACTTATCATAGTAAACCTATTCTTTCTCCTGTCAAGACGTGGCTTCTTCCTTGCTGCTAC AGGGCAACAGCAAATCATTACGTTCGTTCCCATCCATCTGCTGAGTGGCGTCTCCTCATA TATCCGGGCCATCCGTTTGTTTATTAATATGTCCAGTACTAACTTCTTTTAGGCAAGCAT AATAAAACCTACTAGCACTTGCAATATATCACCAGCTTGATTCCCAGTATTAGTTGGTTC ATGCCATTGCATATTGGATAAAAGCTGCATATACAGAAGAAAATCGAGATAAATAGTGTT CAACTCTTCCAGAATCACAAAAATAGTCTCCAACTTTTATGTACAAAAAGGTGTTCATTC CCAGTAAAAATTGCTAGTATATGTACAGTCTACCAAACACAACTTTATCCCCGTCAAAAC AACTTTGTATTCATCTCATAGCATAACAAAAAAAGTGCACGCACACAGAGATTTCAAAAG CACTGGACTGTGTTAGAGATACAGAGCGCTTAAAGTTCAGACTGATAGGTTTCAAAACCG TGCACAACTTCACAGAGTACAGACTAATTCACACAGAC



consensusID : consensus_8496#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 887
fasta sequence
                              [TCTTCTCCGGCGAGCCAGAGGGGCGAGAGCGGCGGCGGGGTCGTAGGCGGCGGTGTGTGGCGATCCGGCGAAGGGAATCTCGCACGGCGGCGCGGCTGCTGAGGGGGAACACCCTAATCCCCTTCTCTCCCCGACCCCTCTCCCGGCGACGCGAGTGAGTGGCTGGCGGCAAGCGCCGAGCGGCTCCAGCTTCACTGGCTGGGGGGCGCACCCGAAGACGGCGCCAAGCCATCGGCGGTCCGGCAAAGCACCGAGCCGACGGGGG-AGGGGGGGAGGTGCCAAAAGTGGCAGCCCAAGCCGATGCTTCCCGTCTCCGGTGAGGCGGCGACGGTGGGGAAGCTCCAAGACGGCGCGAGCGGTGGTGAACCGGCGCGACCCCGAGGACGCCGGAGAGCTTCAAGTCTGCGTCTAGATCTGGACGCTCTTGCAGATGACGTCCACAGTCTGGTGCGATCCAACTCCAACCTGAGTGATCGCCATCGCCATCAGTTTGGTGTTGCTACCACGTGGACGGTGGATCTCCTCGCCGTCATCGTCCGCACCTCCTCCTACTCGTCGATTCGATGAGGTGCGGCGAGCGAAGCCCTCTTGGCATGGACGAAGGCCACAGCGCCACCCATCAACTAGAGAACGAGGCTCCCACGTACGCGGCACGCGCGACTGATTCCTCTTCTCGTTTTACTTTTTTTTATTCTCCTTTTTTTTTTCCTGTATTGATTATCGTAGCAACCAATCAGAGGCGAGCAACTGCACCAGATGGACGTGGTACCTTACAGCGTCCTTGTCTGAGACGCTCTTTTTTACTTAGCGTCCATCCTATTCTTGTAATTCTACTCTATGATTTTACTGGATATTTAATTCATTTGTTAATAATTATTATACAAAAA]

[+] EMBL AK067460             [TCTTCTCCGGCGAGCCAGAGGGGCGAGAGCGGCGGCGGGGTCGTAGGCGGCGGTGTGTGGCGATCCGGCGAAGGGAATCTCGCACGGCGGCGCGGCTGCTGAGGGGGAACACCCTAATCCCCTTCTCTCCCCGACCCCTCTCCCGGCGACGCGAGTGAGTGGCTGGCGGCAAGCGCCGAGCGGCTCCAGCTTCACTGGCTGGGGGGCGCACCCGAAGACGGCGCCAAGCCATCGGCGGTCCGGCAAAGCACCGAGCCGACGGGGG AGGGGGGGAGGTGCCAAAAGTGGCAGCCCAAGCCGATGCTTCCCGTCTCCGGTGAGGCGGCGACGGTGGGGAAGCTCCAAGACGGCGCGAGCGGTGGTGAACCGGCGCGACCCCGAGGACGCCGGAGAGCTTCAAGTCTGCGTCTAGATCTGGACGCTCTTGCAGATGACGTCCACAGTCTGGTGCGATCCAACTCCAACCTGAGTGATCGCCATCGCCATCAGTTTGGTGTTGCTACCACGTGGACGGTGGATCTCCTCGCCGTCATCGTCCGCACCTCCTCCTACTCGTCGATTCGATGAGGTGCGGCGAGCGAAGCCCTCTTGGCATGGACGAAGGCCACAGCGCCACCCATCAACTAGAGAACGAGGCTCCCACGTACGCGGCACGCGCGACTGATTCCTCTTCTCGTTTTACTTTTTTTTATTCTCCTTTTTTTTTTCCTGTATTGATTATCGTAGCAACCAATCAGAGGCGAGCAACTGCACCAGATGGACGTGGTACCTTACAGCGTCCTTGTCTGAGACGCTCTTTTTTACTTAGCGTCCATCCTATTCTTGTAATTCTACTCTATGATTTTACTGGATATTTAATTCATTTGTTAATAATTATTATACAAAAA]
[+] EMBL CA754195             [                        GAGAGCGGCGGCGGGGTCGTAGGCGGCGGTGTGTGGCGATCCGGCGAAGGGAATCTCGCACGGCGGCGCGGCTGCTGAGGGGGAACACCCTAATCCCCTTCTCTCCCCGACCCCTCTCCCGGCGACGCGAGTGAGTGGCTGGCGGCAAGCGCCGAGCGGCTCCAGCTTCACTGGCTGGGGGGCGCACCCGAAGACGGCGCCAAGCCATCGGCGGTCCGGCAAAGCACCGAGCCGACGGGGGAAGGGGGGGAGGTGCCAAAAGTGGCAGCCCAAGCCGATGCTTCCCGTCTCCGGTGAGGCGGCGACGGTGGGGAAGCTCCAAGACGGCGCGAGCGGTGGTGAACCGGCGCGACCCCGAGGACGCCGGAGAGCTTCAAGTCTGCGTCTAGATCTGGACGCTCTTGCAGATGACGTCCACAGTCTGGTGCGATCCNACTCCAACCTGAGTGATCGCCATCGCCATCAGTTTGGTGTTGCTACCACGTGGACGGTGGATCTCCTCGCCGTCATCGTCCGCACCTCCTCCTACTCGTCGATTCGATGAGGTGCGGCGAGCGAAGCCCTCTTGGCATGGACGAAGGCCACAGCGCCACCCATC ACTAGAGAACGAGG                                                                                                                                                                                                                                                           ]


>consensus_8496#1 TCTTCTCCGGCGAGCCAGAGGGGCGAGAGCGGCGGCGGGGTCGTAGGCGGCGGTGTGTGG CGATCCGGCGAAGGGAATCTCGCACGGCGGCGCGGCTGCTGAGGGGGAACACCCTAATCC CCTTCTCTCCCCGACCCCTCTCCCGGCGACGCGAGTGAGTGGCTGGCGGCAAGCGCCGAG CGGCTCCAGCTTCACTGGCTGGGGGGCGCACCCGAAGACGGCGCCAAGCCATCGGCGGTC CGGCAAAGCACCGAGCCGACGGGGGAGGGGGGGAGGTGCCAAAAGTGGCAGCCCAAGCCG ATGCTTCCCGTCTCCGGTGAGGCGGCGACGGTGGGGAAGCTCCAAGACGGCGCGAGCGGT GGTGAACCGGCGCGACCCCGAGGACGCCGGAGAGCTTCAAGTCTGCGTCTAGATCTGGAC GCTCTTGCAGATGACGTCCACAGTCTGGTGCGATCCAACTCCAACCTGAGTGATCGCCAT CGCCATCAGTTTGGTGTTGCTACCACGTGGACGGTGGATCTCCTCGCCGTCATCGTCCGC ACCTCCTCCTACTCGTCGATTCGATGAGGTGCGGCGAGCGAAGCCCTCTTGGCATGGACG AAGGCCACAGCGCCACCCATCAACTAGAGAACGAGGCTCCCACGTACGCGGCACGCGCGA CTGATTCCTCTTCTCGTTTTACTTTTTTTTATTCTCCTTTTTTTTTTCCTGTATTGATTA TCGTAGCAACCAATCAGAGGCGAGCAACTGCACCAGATGGACGTGGTACCTTACAGCGTC CTTGTCTGAGACGCTCTTTTTTACTTAGCGTCCATCCTATTCTTGTAATTCTACTCTATG ATTTTACTGGATATTTAATTCATTTGTTAATAATTATTATACAAAAA



consensusID : consensus_8496#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 749
fasta sequence
                              [TCTTTTTTTTTGTATAATAATTATTAACAAATGAATTAAATACCCAGTAAAATCATAGAGTAGAATTACAAGAATAGGATGGACGCTAAGTAAAAAAGAGCGTCTCAGACAAGGACGCTGTAAGGTACCACGTCCATCTGGTGCAGTTGCTCGCCTCTGATTGGTTGCTACGATAATCAATACAGGAAAAAAAAAAAGGAGAATAAAAAAAAGTAAAACGAGAAGAGGAATCAGTCGCGCGTGCCGCGTACGTGGGAGCCTCGTTCTCTAGTTGATGGGTGGCGCTGTGGCCTTCGTCCATGCCAAGAGGGCTTCGCTCGCCGCACCTCATCGAATCGACGAGTAGGAGGAGGTGCGGACGATGACGGCGAGGAGATCCACCGTCCACGTGGTAGCAACACCAAACTGATGGCGATGGCGATCACTCAGGTTGGAGTTGGATCGCACCAGACTGTGGACGTCATCTGCAAGAGCGTCCAGATCTAGACGCTTTTTTTATCAAGACGTCCACACCCGGATGCTATTGTAGTCAGCGTCCAGACCATTTTTCTAATTCCAGACTATATATCTAATTTATGTGTTAATAATTATTATATTAAAAAGATCGTTACTATTCACCTACGACCAATCGTTTCTGTAATATATTTTTTTTTGCTGTGTGATACGAGAGAGATGTAGATGTATTTACAGAATTTTTATTCCAAATGAGACGCTCATTACAATATAACGCCCCACATACACACACAAAC]

[+] EMBL CB680759             [TCTTTTTTTTTGTATAATAATTATTAACAAATGAATTAAATACCCAGTAAAATCATAGAGTAGAATTACAAGAATAGGATGGACGCTAAGTAAAAAAGAGCGTCTCAGACAAGGACGCTGTAAGGTACCACGTCCATCTGGTGCAGTTGCTCGCCTCTGATTGGTTGCTACGATAATCAATACAGGAAAAAAAAAAAGGAGAATAAAAAAAAGTAAAACGAGAAGAGGAATCAGTCGCGCGTGCCGCGTACGTGGGAGCCTCGTTCTCTAGTTGATGGGTGGCGCTGTGGCCTTCGTCCATGCCAAGAGGGCTTCGCTCGCCGCACCTCATCGAATCGACGAGTAGGAGGAGGTGCGGACGATGACGGCGAGGAGATCCACCGTCCACGTGGTAGCAACACCAAACTGATGGCGATGGCGATCACTCAGGTTGGAGTTGGATCGCACCAGACTGTGGACGTCATCTGCAAGAGCGTCCAGATCTAGACGCTTTTTTTATCAAGACGTCCACACCCGGATGCTATTGTAGTCAGCGTCCAGACCATTTTTCTAATTCCAGACTATATATCTAATTTATGTGTTAATAATTATTATATTAAAAAGATCGTTACTATTCACCTACGACCAATCGTTTCTGTAATATATTTTTTTTTGCTGTGTGATACGAGAGAGATGTAGATGTATTTACAGAATTTTTATTCCAAATGAGACGCTCATTACAATATAACGCCCCACATACACACACAAAC]


>consensus_8496#2 TCTTTTTTTTTGTATAATAATTATTAACAAATGAATTAAATACCCAGTAAAATCATAGAG TAGAATTACAAGAATAGGATGGACGCTAAGTAAAAAAGAGCGTCTCAGACAAGGACGCTG TAAGGTACCACGTCCATCTGGTGCAGTTGCTCGCCTCTGATTGGTTGCTACGATAATCAA TACAGGAAAAAAAAAAAGGAGAATAAAAAAAAGTAAAACGAGAAGAGGAATCAGTCGCGC GTGCCGCGTACGTGGGAGCCTCGTTCTCTAGTTGATGGGTGGCGCTGTGGCCTTCGTCCA TGCCAAGAGGGCTTCGCTCGCCGCACCTCATCGAATCGACGAGTAGGAGGAGGTGCGGAC GATGACGGCGAGGAGATCCACCGTCCACGTGGTAGCAACACCAAACTGATGGCGATGGCG ATCACTCAGGTTGGAGTTGGATCGCACCAGACTGTGGACGTCATCTGCAAGAGCGTCCAG ATCTAGACGCTTTTTTTATCAAGACGTCCACACCCGGATGCTATTGTAGTCAGCGTCCAG ACCATTTTTCTAATTCCAGACTATATATCTAATTTATGTGTTAATAATTATTATATTAAA AAGATCGTTACTATTCACCTACGACCAATCGTTTCTGTAATATATTTTTTTTTGCTGTGT GATACGAGAGAGATGTAGATGTATTTACAGAATTTTTATTCCAAATGAGACGCTCATTAC AATATAACGCCCCACATACACACACAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8496#0      -CTTCTCCGGCGAGCCAGAGGGGCGAGAGCGGCGGCGGGGTCGTAGGCGGCGGTGTGTGG 59
consensus_8496#1      TCTTCTCCGGCGAGCCAGAGGGGCGAGAGCGGCGGCGGGGTCGTAGGCGGCGGTGTGTGG 60
consensus_8496#2      -------------------------------------------TCTTTTTTTTTGTATAA 17
                                                                 *         *** *  

consensus_8496#0      CGATC-CGGCGAAGGGAATCTCGCACGGCGGCGCGGCTGCTGAGGGGGAACACCCTAATC 118
consensus_8496#1      CGATC-CGGCGAAGGGAATCTCGCACGGCGGCGCGGCTGCTGAGGGGGAACACCCTAATC 119
consensus_8496#2      TAATTATTAACAAATGAATTAAATACC-CAGTAAAATCATAGAGTAGAATTACAAGAATA 76
                        **       **  ****     **  * *          ***  * *  **   *** 

consensus_8496#0      CCCTTCTCTCCCCGACCCCTCTCCCGGCGACGCGAGTGAGTGGCTGGCGGCAAGCGCCGA 178
consensus_8496#1      CCCTTCTCTCCCCGACCCCTCTCCCGGCGACGCGAGTGAGTGGCTGGCGGCAAGCGCCGA 179
consensus_8496#2      -------------GGATGGACGCTAAGTAA-AAAAGAGCGTCTCAGACAA-GGACGCTGT 121
                                   *      * *   *  *    ** * **  * * *      *** * 

consensus_8496#0      GCGGCTCCAGCTTCA-CTGGCTGGGGGGCGCACCCGAAGACGGCGCCAAGCCATCGGCGG 237
consensus_8496#1      GCGGCTCCAGCTTCA-CTGGCTGGGGGGCGCACCCGAAGACGGCGCCAAGCCATCGGCGG 238
consensus_8496#2      AAGGTACCACGTCCATCTGGTGCAGTTGCTCGCCTCTGATTGGTTGCTA-CGATAATCAA 180
                        **  ***  * ** ****    *  ** * **       **   * * * **   *  

consensus_8496#0      TCCGGCAAAGCACCGAGCCGACGGGGGAGGGGGGGAGGTGCCAAAAGTGGCAGCCCAAGC 297
consensus_8496#1      TCCGGCAAAGCACCGAGCCGACGGGGGAGGGGGGGAGGTGCCAAAAGTGGCAGCCCAAGC 298
consensus_8496#2      TACAGGAAA-----AAAAAAAAGGAGAATAAAAAAAAGTAAAACGAGAAGAGGAATCAGT 235
                      * * * ***      *    * ** * *       * **   *  **  *  *    ** 

consensus_8496#0      CGATGCTTCCCGTCTCCGGTGAGGCGGCGACGGTGGGGAAGCTCCAAGACGGCGCGAGCG 357
consensus_8496#1      CGATGCTTCCCGTCTCCGGTGAGGCGGCGACGGTGGGGAAGCTCCAAGACGGCGCGAGCG 358
consensus_8496#2      CG-CGCGTGCCGCGTACGTGGGAGCCTCGTTC-TCTAGTTGATGGGTGGCGCTGTGGCCT 293
                      **  ** * ***  * **  *  **  **    *   *  * *    * **  * *  * 

consensus_8496#0      GTGGTGA-ACCGGCGCGACCCCGAGGACGCCGGAGAGCTTCAAGTCTGGTAAGTTTCAGA 416
consensus_8496#1      GTGGTGA-ACCGGCGCGACCCCGAGGACGCCGGAGAGCTTCAAGTCTG-----CGTCTAG 412
consensus_8496#2      TCGTCCATGCCAAGAGGGCTTCGC--TCGCCGCACCTCATCGAATCGA-----CGAGTAG 346
                        *   *  **     * *  **    ***** *   * ** * **              

consensus_8496#0      AACCCGAAGCTCAAATTTCTTGATTCGGGTTTTGGGGCTTATTAGGGTTCTCCAGCCGAA 476
consensus_8496#1      ATCTGGACGCTC----TTGCAGAT--GACGTCCACAGTCTGGTGCGATCCAACTCCAACC 466
consensus_8496#2      GAGGAGGTGCGGACGATGACGGCGAGGAGATCCACCGTCCACGTGGTAGCAACACCAAAC 406
                           *  **      *    *    *   *     *        *   *  *  *    

consensus_8496#0      TTA--GGGTTCTTCAATTTGGGAATTTATTCGAATTAGGGTTTCTGAGGTGTGGATTTTT 534
consensus_8496#1      TGA--GTGATCGCCA--TCGCCA------TCAGTTTGGTGTTGCTACCACGTGGACGGTG 516
consensus_8496#2      TGATGGCGATGGCGA--TCAC--------TCAGGTTGGAGTTGGATCGCACCAGACTGTG 456
                      * *  * * *    *  *           **   ** * ***           **   * 

consensus_8496#0      GGAATTTCAATCTTGTTTATCCCAATCTCCTTTTTTTCTGAGTTGAACAGATTGGGGAAA 594
consensus_8496#1      GATCTCCTCGCCGTCATCGTCCGCACCTCCTCCTACTC---GTCGATTCGATGAGG---- 569
consensus_8496#2      GACGTCATCTGCAAGAGCGTCCAGATCTAGACGCTTTT--------TTTATCAAGA---- 504
                      *   *      *       ***  * **        *                 *     

consensus_8496#0      ATTTTGGAAAGTTCAATCTAGTATTTTGTTGGGGGGTGGGGGGTTGGGGCATACCACCTA 654
consensus_8496#1      --TGCGGCGAGCGAAGCCC----TCTTG-----GCATGGACGA--AGGCCACAGCGCCAC 616
consensus_8496#2      --CGTCCACACCCGGATGC----TATTG-----TAGTCAGCGTCCAGACCATTTTTCTAA 553
                               *             * ***        *    *    *  **     *   

consensus_8496#0      GTACTAGGTAGGAACTGTAACATATGTTTCAGCCTGGTTTGCCAGACAGAACAACAAAAA 714
consensus_8496#1      CCATCAACTAGAGAACG------AGGCTCCCAC---GTACGCGGCAC-GCGCGACTGATT 666
consensus_8496#2      TTCCAGACTATATA-------------TCTAAT----------TTAT-GTGTTAATAATT 589
                              **   *             *                 *  *    *   *  

consensus_8496#0      CTTATATTAGGAA-ATCAATAGTTGTAGTGTACAAAAAAAAAGTTATAACTCAAGTTGCA 773
consensus_8496#1      CCTCTTCTCGTT---TTACTTTTTTTTATTCTCCTTTTTTTTTTCCTGTATTGATTATCG 723
consensus_8496#2      ATTATATTAAAAAGATCGTTACTATTCACCTACGACCAATCGTTTCTGTAATATATTTTT 649
                        * *  *       *   *  *  *      *          *  *        *    

consensus_8496#0      TTGCACAAATTTATAATTGAAGTTGCACATGATTTTAAAATGGCAACTACAACAATTAGG 833
consensus_8496#1      TAGCAACCAATCAGAGGCGAGCAACTGCACCAGATGGACGTGGTACCTTACAGCGTCCTT 783
consensus_8496#2      TTTTGCTGTGTGATACGAGAGAGATGTAGATGTATTTACAGAATTTTTA-------TTCC 702
                      *         * * *   **              *  *         *            

consensus_8496#0      GAATGCAACTTTGCTATATATGAGGCAACTATTAGTCCCATACTTTAAAAATCACAAAAT 893
consensus_8496#1      GTCTGAGACGCTCTTTTTTACTTAGCGTCCAT----CCTATTCTTGTAATTCTACTCTAT 839
consensus_8496#2      AAATGAGACGCTCATTACAATATAACGCCCCA----CATACACACACAAAC--------- 749
                         **  **  *  *    *     *  *       *  *  *    **           

consensus_8496#0      AATAAGGATTGCTTTTGGGCTGCAGGGTGCAAATAGCTGAAACGCACAAGAAAGAATCCC 953
consensus_8496#1      GATTTTACTGGATATTTAATT--CATTTGTTAATAATTATTATACAAAAA---------- 887
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      ATTTGTTGGAATGGATTAGGTAATGTGAAAAACTAAGAAAAACCCGATCACCGCTACACA 1013
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      AATAGAAAAACAAAGATGTGTGTTTTTATTATGCTAGCTCTAGATTTTCAATGTTTACAT 1073
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      CACAAGCAATCCCGTACTGAGCCAATACTGCAACTAACATATAAATGCACTTAATCGAAA 1133
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      AGAAAAACATGTTCTCTGAACCGCACAGAATTCAACGCATACTGAGGGTTAGATCGCATA 1193
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      CACAGAATCACAGATACACATGGACTTTCCTTATCAATTTGTCTAGTCCTAGCATTTTTT 1253
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      TCAGGCACACGGCCTAGTAACACTTGCTACATACTCACGTATCATAATTTTCCAGTACAA 1313
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      GCCATTTCATGCCATTGCAAATCGGATGGAAGCAACAGCAAGAGAGGCAAAGTGATAAAA 1373
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      AAAATAATAGTGTCCTACTCTTCCAAATTCATAAAAGCATGGTCTATATAAGCATATAAA 1433
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      TACATCTAGATTGATTGAGTTAAATAAAAAACAAAGTAACAATAAGTTGCACTTTCCATA 1493
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      TGATGCAAGTATAGGTGGCTAACAGTAAAAAAAAAAGGATACATTCAACAAAACCTTTAT 1553
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      TATCTTTTTGTACACATGTTTGTTGTCCCTTCTTCCTTTTTATGGACTTCCTGATATGAA 1613
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      GAATTGGAAAGGAAAATTACCATTGTTCTGAATCCGCAAAGAGAAGTTCAGAACCAACAG 1673
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      ATCCATCATCCTACAAATGCAAATTCAAATACAAATGCTGTATTAGCTTAGATGGGTGAG 1733
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      ATCACATACTTATCATAGTAAACCTATTCTTTCTCCTGTCAAGACGTGGCTTCTTCCTTG 1793
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      CTGCTACAGGGCAACAGCAAATCATTACGTTCGTTCCCATCCATCTGCTGAGTGGCGTCT 1853
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      CCTCATATATCCGGGCCATCCGTTTGTTTATTAATATGTCCAGTACTAACTTCTTTTAGG 1913
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      CAAGCATAATAAAACCTACTAGCACTTGCAATATATCACCAGCTTGATTCCCAGTATTAG 1973
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      TTGGTTCATGCCATTGCATATTGGATAAAAGCTGCATATACAGAAGAAAATCGAGATAAA 2033
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      TAGTGTTCAACTCTTCCAGAATCACAAAAATAGTCTCCAACTTTTATGTACAAAAAGGTG 2093
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      TTCATTCCCAGTAAAAATTGCTAGTATATGTACAGTCTACCAAACACAACTTTATCCCCG 2153
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      TCAAAACAACTTTGTATTCATCTCATAGCATAACAAAAAAAGTGCACGCACACAGAGATT 2213
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      TCAAAAGCACTGGACTGTGTTAGAGATACAGAGCGCTTAAAGTTCAGACTGATAGGTTTC 2273
consensus_8496#1      ------------------------------------------------------------
consensus_8496#2      ------------------------------------------------------------
                                                                                  

consensus_8496#0      AAAACCGTGCACAACTTCACAGAGTACAGACTAATTCACACAGAC 2318
consensus_8496#1      ---------------------------------------------
consensus_8496#2      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)