These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1451 fasta sequence [CTTCTATCTTGTTATAGGAATGCCATGAATATTATGAAACTGCCTATTATGTTGAGGTCTGCTGTACTGAACTGCCTATTATGAAACTTGATGCAGAATTGAAGGAGCTGAGATCAATAAAAGTTTGCTTGCTTTAAAGGAATGCATCAGAGCACTAGATAATGACCAGACCCACATTCCATTTCGAGGAAGCAAATTAACTGAAGTTTTGCGGGATTCCTTCATTGGGGACTCACGCACTGTCATGATATCATGCATTTCTCCCAGCTCTGGTTCTTGTGAACATACTCTGAACACATTGAGATATGCTGATAGGGTGAAGAGTCTGTCGAAAGGAAGCAACACCAAGAAAGATTTGTCTTTGGCTGCTGCACCTTTAAGGGAGTCAAGTCCTTCCCTATTGGCTTCAGCTGTGCCCTCTTTCTCATCAGCCGAGGTGATGAATGATATCACTGAAAGGAGCAACTTTGGTTGGACCAAGCAACAGTATGTCAAAGAGCACCAAGCACCAACATTTGTGGATAGAATGCAAAAGGTGAAAGAAGATACCGAATTTAGTCTGTCAAATGGTGGTTATTTCAAGGAACAAAGAACAAAGGGTAGTGTGCCAGTGGGCATAGCTGAAGTACCTGATACAGTGTACCAGCAGGGAAGGCAACCAACTAGGAAGGCTCGTGATTTAACTTCAGACAATAATATGAGAAATTCCATTGCTTATCCAATTATTAGAAGGGTTGTACCAGATGAAGATGAGCATCTGAACGAACTCCTCCAGGAAGAGGAAGATTTGGTGTCTGCTCATCGGAAGCAGGTGGAAGAGACCCTAGACATGATCAAAGAGGAGATGAATTTATTAGTTGAAGCGGATCAACCTGGCAACCAACTA-GACGACT-ACATCACAAGACTAAGCGGTATACTC-TCTCAGAAAGCTGCCGGAATTGTCGACTTACAGGCACGTCTTGCGCAGTTCCAGAGGCGCTTAAACGAGAATAATGTGCTGCTATATGCCCAATGCCCTTGATCAAAGGAAGTACCTATTTGTGATGAGAATAACGTGCAGTATATCTGTATACCAGAGCCC-TTGATCAGA-GGAGTTGCCTATTTGTC-TTCACT-A-CGAGGCTAATCAGAAAAGTTGGCTGTG-CCA-C-TGTTTGCTGGTATGCTCCGTAGAGATGCGGCCTTGCCTGGCC-AATACAGCTGCAGTTCAGAACCCA-TAGACG-CAAGACA-AA-CGCAGAACTAGATGGCTAGTTTAC-TGCAC-TTTGGGATCGGCCGACTTCGTAAGC-TATTTGTACCCGAGTTGCG-CCAGT-TGTGTCC-TTCTGTTACATCCTTGTGTATATCGTGCAAATCGTGTCGTCACAGGATTGTCCTGTTATTTGTTGCTCAACAAATACACTTTTTTTTGTCTGATGTATGATGAATTCAGA-G-TTTTGTGATAATCCATTTTGCACCCAAAA] [+] EMBL AK060383 [CTTCTATCTTGTTATAGGAATGCCATGAATATTATGAAACTGCCTATTATGTTGAGGTCTGCTGTACTGAACTGCCTATTATGAAACTTGATGCAGAATTGAAGGAGCTGAGATCAATAAAAGTTTGCTTGCTTTAAAGGAATGCATCAGAGCACTAGATAATGACCAGACCCACATTCCATTTCGAGGAAGCAAATTAACTGAAGTTTTGCGGGATTCCTTCATTGGGGACTCACGCACTGTCATGATATCATGCATTTCTCCCAGCTCTGGTTCTTGTGAACATACTCTGAACACATTGAGATATGCTGATAGGGTGAAGAGTCTGTCGAAAGGAAGCAACACCAAGAAAGATTTGTCTTTGGCTGCTGCACCTTTAAGGGAGTCAAGTCCTTCCCTATTGGCTTCAGCTGTGCCCTCTTTCTCATCAGCCGAGGTGATGAATGATATCACTGAAAGGAGCAACTTTGGTTGGACCAAGCAACAGTATGTCAAAGAGCACCAAGCACCAACATTTGTGGATAGAATGCAAAAGGTGAAAGAAGATACCGAATTTAGTCTGTCAAATGGTGGTTATTTCAAGGAACAAAGAACAAAGGGTAGTGTGCCAGTGGGCATAGCTGAAGTACCTGATACAGTGTACCAGCAGGGAAGGCAACCAACTAGGAAGGCTCGTGATTTAACTTCAGACAATAATATGAGAAATTCCATTGCTTATCCAATTATTAGAAGGGTTGTACCAGATGAAGATGAGCATCTGAACGAACTCCTCCAGGAAGAGGAAGATTTGGTGTCTGCTCATCGGAAGCAGGTGGAAGAGACCCTAGACATGATCAAAGAGGAGATGAATTTATTAGTTGAAGCGGATCAACCTGGCAACCAACTA GACGACT ACATCACAAGACTAAGCGGTATACTC TCTCAGAAAGCTGCCGGAATTGTCGACTTACAGGCACGTCTTGCGCAGTTCCAGAGGCGCTTAAACGAGAATAATGTGCTGCTATATGCCCAATGCCCTTGATCAAAGGAAGTACCTATTTGTGATGAGAATAACGTGCAGTATATCTGTATACCAGAGCCC TTGATCAGA GGAGTTGCCTATTTGTC TTCACT A CGAGGCTAATCAGAAAAGTTGGCTGTG CCA C TGTTTGCTGGTATGCTCCGTAGAGATGCGGCCTTGCCTGGCC TATACAGCTGCAGTTCAGAACCCA TAGACG CAAGACA AA CGCAGAACTAGATGGCTAGTTTAC TGCAC TTTGGGATCGGCCGACTTCGTAAGC TATTTGTACCCGAGTTGCG CCAGT TGTGTCC TTCTGTTACATCCTTGTGTATATCGTGCAAATCGTGTCGTCACAGGATTGTCCTGTTATTTGTTGCTCAACAAATACACTTTTTTTTGTCTGATGTATGATGAATTCAGA G TTTTGTGATAATCCA ] [+] EMBL AK071022 [ CCTCTTTCTCATCAGCCGAGGTGATGAATGATATCACTGAAAGGAGCAACTTTGGTTGGACCAAGCAACAGTATGTCAAAGAGCACCAAGCACCAACATTTGTGGATAGAATGCAAAAGGTGAAAGAAGATACCGAATTTAGTCTGTCAAATGGTGGTTATTTCAAGGAACAAAGAACAAAGGGTAGTGTGCCAGTGGGCATAGCTGAAGTACCTGATACAGTGTACCAGCAGGGAAGGCAACCAACTAGGAAGGCTCGTGATTTAACTTCAGACAATAATATGAGAAATTCCATTGCTTATCCAATTATTAGAAGGGTTGTACCAGATGAAGATGAGCATCTGAACGAACTCCTCCAGGAAGAGGAAGATTTGGTGTCTGCTCATCGGAAGCAGGTGGAAGAGACCCTAGACATGATCAAAGAGGAGATGAATTTATTAGTTGAAGCGGATCAACCTGGCAACCAACTA GACGACT ACATCACAAGACTAAGCGGTATACTC TCTCAGAAAGCTGCCGGAATTGTCGACTTACAGGCACGTCTTGCGCAGTTCCAGAGGCGCTTAAACGAGAATAATGTGCTGCTATATGCCCAATGCCCTTGATCAAAGGAAGTACCTATTTGTGATGAGAATAACGTGCAGTATATCTGTATACCAGAGCCC TTGATCAGA GGAGTTGCCTATTTGTC TTCACT A CGAGGCTAATCAGAAAAGTTGGCTGTG CCA C TGTTTGCTGGTATGCTCCGTAGAGATGCGGCCTTGCCTGGCC AATACAGCTGCAGTTCAGAACCCA TAGACG CAAGACA AA CGCAGAACTAGATGGCTAGTTTAC TGCAC TTTGGGATCGGCCGACTTCGTAAGC TATTTGTACCCGAGTTGCG CCAGT TGTGTCC TTCTGTTACATCCTTGTGTATATCGTGCAAATCGTGTCGTCACAGGATTGTCCTGTTATTTGTTGCTCAACAAATACACTTTTTTTTGTCTGATGTATGATGAATTCAGA G TTTTGTGATAATCCA ] [+] EMBL BM421916 [ cGCGGATCAACCTGGCAACCAACTAGGACGACTNACATCACAAGACTAA CGGTATACTCTTCTCAGAAAGCTGCCGGAATTGTCGACTTACAGGCACGTCTTGCGCAGTTCCAGAGGCGCTTAAACGAGAATAATGTGCTGCTATATGCCCAATGCCCTTGATCATAGGAAGTACCTATTTGTGATGAGAATAACGTGCAGTATATCTGTATACCAGAGCCC TTGATCAGA GGAGTTGCCTATTTGTC TTCACT A CGAGGCTAATCAGAAAAGTTGGCTGTG CCA C TGTTTGCTGGTATGCTCCGTAGAGATGCGGCCTTGCCTGGCC AATACAGCTGCAGTTCAGAACCCA TAGACG CAAGAC AA CGCAGAACTAGATGGCTAGTTTAC TGCAC TTTGGGATCGGCCGACTTCGTAAGC TATTTGTACCCGAGTTGCG CCAGT TGTGTCC TTCTGTTACATCCTTGTGTATATCGTGCAAATCGTGTCGTCACAGGATTGTCCTGTTATTTGTTGCTCAACAAATACACTTTTTTTTGTCTGATGTATGATGAATTCAGACC TTTTGTGATAATCCATTTTGCACCCAAAA] [+] EMBL BI803764 [ CTCAGAAAGCTGCCGGAATTGTCGACTTACAGGCACGTCTTGCGCAGTTCCAGAGGCGCTTAAACGAGAATAATGTGCTGCTATATGCCCAATGCCCTTGATCATAGGAAATACCTATTTGTGATGAGAATAACGTGCAGTATATCTGTATACCAGAGCCC TTGATCAGA GGAGTTGCCTATTTGTC TTCACT A CGAGGCTAATCAGAAAAGTTGGCTGTG CCA C TGTTTGCTGGTATGCTCCGTAGAGATGCGGCCTTGCCTGGCC AATACAGCT CAGTTCAGAACCCA TAGACGCCAAGACA AAGCGCAGAACTAGATGGCTAGTTTAC TGCACATTTGGGATCGGCCGACTTCGTAAGC TATTTGTACCCGAGTTGCGACCAGTGTGTGTCC TTCTGTTACATCCTTGTGTATATCGTGCAAATCGTGTCGTCACAGGATTGTCCTGTTATTTGTTGCTCAACAAATACACTTTTTTTTGTCTGATGTATGATGAATTCCGA GCTTTTGTGATAATCCATTTTGCACCCAAAA] [+] EMBL BI802288 [ agTACCAGAGCCCATTGATCAGAGGGAGTTGCCTATTTGTCATTCACTGATCGAGGCTAATCAGAAAAGTTGGCTGTGTCCATCGTGTTTGCTGGTATGCTCCGTAGAGATGCGGCCTTGCCTGGCCAAATACAGCTGCAGTTCAGAACCCAGTAGACG CAAGACACAA CGCAGAACTAGATGGCTAGTTTACATGCAC TTTGGGATCGGCCGACTTCGTAAGCATATTTGTACCCGAGTTGCG CCAGT TGTGTCCATTCTGTTACATCCTTGTGTATATCGTGCAAATCGTGTCGTCACAGGATTGTCCTGTTATTTGTTGCTCAACAAATACACTTTTTTTTGTCTGATGTATGATGAATTCAGA G TTTTGTGATAAaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||