Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8539 cluster # 8539       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8539#0 length = 2589 sequences # 2  
consensus_8539#1 length = 904 sequences # 2  
consensus_8539#2 length = 181 sequences # 1  

consensusID : consensus_8539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2589
fasta sequence
                              [TCGCTCCCGCTCTAGCGCCGCCGTCGCAATCACCTTCTCCCCCAATCGTATCTGCCGCTGCTTCCGCTCTCCACCTTCACACAGTCGACCGACGTCAGTAGTCCGCTATCGATGCAGCGTCTGGCGTTTGGATCTGCTCGTCTCCGCCGCCGGTTACGCCGCCTCTCCGTCGATCTCCTACGTGGTCCCGTTTGCTCCATAGCGGACTCCGCCTGCAAGTCCGCCGGCCATCGCATGATCCTGACGGCAGCTAGATCCAGTACCCTGTCCACCCGTCTCTCCTTCATCACCGAGGGACATCACAATCTAGAAAAGGTAGACAAAAAATCGTATGTGGCGTTTGATTACCGGAGATTCCCAGAAATTGTGTGTGAGGTTTGGAAGTTCTCAAGTCTGTTGGTAGCCATTCGTTTGTGTAGCAAGTAAGCAACATTTGCTAGGACAGGGCATTTGTCGTAATCAGGCTATCCCTTGTCGCAGGTTGCAGCTTTCACGAACATATATCAGTAAACATACTGCTGCATTCAATCAACATATTATCTTGTCATCTCCATATTTACACGAGGGATTAGTTAGCTTGTTCAGTGCTGGTATGCTAAACTATAGACGCATTTGATTTTACATACTGCCTGCTGCATGTACCTGGGAATAATGAACATTATTTGCTGCCAATTTCCTTTAACAACCAATTTTCTTCCTTTAGTTTCCTTCAATATTATAATTTGTGTTTGTCTTTGATCTTAAATTAAAATCAGGCCATATGGTTGCATGAAATCAGGCCCATATCAATACTTATGTCTCCATAAATTATATATGTATATATATGTTCTCTCAAATACTTATAGAAGATTAATAAAATGTCATCTTAGGAAATTAATTTTTCTACCATTCCATGTACACTTAGTTCAGTACCGATGATTGAATAGTAGTGCATCTGCATTATTTTATTCTTTCTGTTCATGAAATTCATATTATTGCAGATCATTTCGGTACATGATAACTATTGCTCCTCGAAGACTGGGTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCCTCGAATACTGGGTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCGATGACCGGGTCCTTGTTGAAGGCTTTCAATTTTGGCATGTTCTGAATTCGAGCATGGGAGTGCAACCATGATCATTCGCATGACCTGTCACTGACTCACTGTCACTTAACCTGTGGATGCATGGATGGGCCAACGGTTGTCTTGTCAGATAGATCCTATGGGACTGCCCCTATGCTCATCTTCCTCCATCTGTGGAGCGACAAGTACCTTTGCTATATTCCTTTTTTAGATTTACAAATCAATTCCTAAAAAAAGAACTTCAGTACACAAATGGTCTCTCTGAACCATGAATTTTTCTTCAGTTAAAAATGGAATAGATATACTACGTGAAGAAATCATGCTTATAAATCTCTAATCTCTCCCTTGTATGGCTGAATGATTGATTTGTTTTGAAAGGCATTGCGATAATTATTGTATATTTGCACTGTGGTAGATTCATAATCCATACTTATTTTCTGAACATGTTCACATTGGACTACTTTTTGGATGTTTAGTATAGTGCATGCTGCCATGTACCAGCAGGCATGTGGAGAAGCATTTGTCTTCATAACTTGCAAATATGTGAAATATCAATTGAGGGGTAGTGGAGCGTATATAGAAATTGAGGGGTAGTGAAATATGTTTTTGCAGGAATTTAGCAAATGTTCTCTTTAACAACTGAAACTCATTTGTTGGGGGTTGACTGGGTGTAATGCAACTGAACGAATCTAGACAAATATATTGATTTTCCGGAAACTGTTTTTCATCAAAATATTACGTTGCATTGTCCATATTACCTTGATAGTGTCATGTTGCTCAACCAAATTACCATGTTTACGCCTTTTCTTTTTACCTGATGTTCTGCTTATTTTGCTCTATGGTAGTGATTATATGCAACTACGCCAGTCCTGTCCTCTGCTTTACATTATTCATATTACTAGAGATTACTAGACTGTTTATGTTTCCAAAGAGCAGCAGCGTGCGAATAGAGATATTTAGGTATATGATCTTTGTATCATATATTCATGTATCATGTATTCAGTAGTTAATATTGTGGCAAACTCTTAGGCTGAATCTGGGCCTGCTTGAAAGCTTGGTCCATAGATCAGAAAGGGTTTTTTTGGACCCACGAAAAATACAAGTGTAATATACTTACCTGTGTAAAGAATTTTGATGCTGTCAATCTAGAAAAATAGATACTCTTAAGTAACCAATACAGACCCACTAACAGGGTGGATACCAGGGTGACGGTCGCCTCAGATTCGGAGCTGAGGGAATGGTGTAGGAGGAAGCGGATGGATCGAGCTGCTACACCCCCGCACTTCGCTGTCTCGATGTGCCCCGTCATTGGCCGCTTCGCCATGGCGGCGGGGTGACGAGATTCTTAAGTGTATCACGAATACTCAAAGTTATATTCTATATTGTACCGATTACCGAATATTTTTTTTATTTCTCTATGACCACAACAAATTAATGGAATAA]

[+] EMBL AK064993             [TCGCTCCCGCTCTAGCGCCGCCGTCGCAATCACCTTCTCCCCCAATCGTATCTGCCGCTGCTTCCGCTCTCCACCTTCACACAGTCGACCGACGTCAGTAGTCCGCTATCGATGCAGCGTCTGGCGTTTGGATCTGCTCGTCTCCGCCGCCGGTTACGCCGCCTCTCCGTCGATCTCCTACGTGGTCCCGTTTGCTCCATAGCGGACTCCGCCTGCAAGTCCGCCGGCCATCGCATGATCCTGACGGCAGCTAGATCCAGTACCCTGTCCACCCGTCTCTCCTTCATCACCGAGGGACATCACAATCTAGAAAAGGTAGACAAAAAATCGTATGTGGCGTTTGATTACCGGAGATTCCCAGAAATTGTGTGTGAGGTTTGGAAGTTCTCAAGTCTGTTGGTAGCCATTCGTTTGTGTAGCAAGTAAGCAACATTTGCTAGGACAGGGCATTTGTCGTAATCAGGCTATCCCTTGTCGCAGGTTGCAGCTTTCACGAACATATATCAGTAAACATACTGCTGCATTCAATCAACATATTATCTTGTCATCTCCATATTTACACGAGGGATTAGTTAGCTTGTTCAGTGCTGGTATGCTAAACTATAGACGCATTTGATTTTACATACTGCCTGCTGCATGTACCTGGGAATAATGAACATTATTTGCTGCCAATTTCCTTTAACAACCAATTTTCTTCCTTTAGTTTCCTTCAATATTATAATTTGTGTTTGTCTTTGATCTTAAATTAAAATCAGGCCATATGGTTGCATGAAATCAGGCCCATATCAATACTTATGTCTCCATAAATTATATATGTATATATATGTTCTCTCAAATACTTATAGAAGATTAATAAAATGTCATCTTAGGAAATTAATTTTTCTACCATTCCATGTACACTTAGTTCAGTACCGATGATTGAATAGTAGTGCATCTGCATTATTTTATTCTTTCTGTTCATGAAATTCATATTATTGCAGATCATTTCGGTACATGATAACTATTGCTCCTCGAAGACTGGGTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCCTCGAATACTGGGTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCGATGACCGGGTCCTTGTTGAAGGCTTTCAATTTTGGCATGTTCTGAATTCGAGCATGGGAGTGCAACCATGATCATTCGCATGACCTGTCACTGACTCACTGTCACTTAACCTGTGGATGCATGGATGGGCCAACGGTTGTCTTGTCAGATAGATCCTATGGGACTGCCCCTATGCTCATCTTCCTCCATCTGTGGAGCGACAAGTACCTTTGCTATATTCCTTTTTTAGATTTACAAATCAATTCCTAAAAAAAGAACTTCAGTACACAAATGGTCTCTCTGAACCATGAATTTTTCTTCAGTTAAAAATGGAATAGATATACTACGTGAAGAAATCATGCTTATAAATCTCTAATCTCTCCCTTGTATGGCTGAATGATTGATTTGTTTTGAAAGGCATTGCGATAATTATTGTATATTTGCACTGTGGTAGATTCATAATCCATACTTATTTTCTGAACATGTTCACATTGGACTACTTTTTGGATGTTTAGTATAGTGCATGCTGCCATGTACCAGCAGGCATGTGGAGAAGCATTTGTCTTCATAACTTGCAAATATGTGAAATATCAATTGAGGGGTAGTGGAGCGTATATAGAAATTGAGGGGTAGTGAAATATGTTTTTGCAGGAATTTAGCAAATGTTCTCTTTAACAACTGAAACTCATTTGTTGGGGGTTGACTGGGTGTAATGCAACTGAACGAATCTAGACAAATATATTGATTTTCCGGAAACTGTTTTTCATCAAAATATTACGTTGCATTGTCCATATTACCTTGATAGTGTCATGTTGCTCAACCAAATTACCATGTTTACGCCTTTTCTTTTTACCTGATGTTCTGCTTATTTTGCTCTATGGTAGTGATTATATGCAACTACGCCAGTCCTGTCCTCTGCTTTACATTATTCATATTACTAGAGATTACTAGACTGTTTATGTTTCCAAAGAGCAGCAGCGTGCGAATAGAGATATTTAGGTATATGATCTTTGTATCATATATTCATGTATCATGTATTCAGTAGTTAATATTGTGGCAAACTCTTAGGCTGAATCTGGGCCTGCTTGAAAGCTTGGTCCATAGATCAGAAAGGGTTTTTTTGGACCCACGAAAAATACAAGTGTAATATACTTACCTGTGTAAAGAATTTTGATGCTGTCAATCTAGAAAAATAGATACTCTTAAGTAACCAATACAGACCCACTAACAGGGTGGATACCAGGGTGACGGTCGCCTCAGATTCGGAGCTGAGGGAATGGTGTAGGAGGAAGCGGATGGATCGAGCTGCTACACCCCCGCACTTCGCTGTCTCGATGTGCCCCGTCATTGGCCGCTTCGCCATGGCGGCGGGGTGACGAGATTCTTAAGTGTATCACGAATACTCAAAGTTATATTCTATATTGTACCGATTACCGAATATTTTTTTTATTTCTCTATGACCACAACAAATTAATGGAATAA]
[-] EMBL BI805823             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               tagaactagGTGGATGCATGGATGGGCCAA GGTTGTCTTGTCAGATAGATCCTATGGGACTG CCCTATGCTCATCTTCCTCCATCTGTGGAGCGACAAGTACC TTGCTATATTCCTTTTTTAGATTTACAAATCAATTCCTAAAAAAAGAACTTCAGTACACAAATGGTCTCTCTGAACCATGAATTTTTCTTCAGTTAAAAATGGAATAGATATACTACGTGAAGAAATCATGCTTATAAATCTCTAATCTCTCCCTTGTATGGCTGAATGA TGA TTG TTTGAAAGGCA TGCGATAATTA TGTATATTTGCACTG GGTAGATTCATAATCCATACTTATTTTCTGAACATGTTCACATTGGACTAC TTTTGGATGTTTAGTATAGTGCATGCTGCCATGTACCAGCAGGCATGTGGAGAAGCATTTGTCTTCATAACTTGCAAATATGTGAAATATCAATTGAGGGGTAGTGGAGCGTATATAGAAATTGAGGGGTAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_8539#0 TCGCTCCCGCTCTAGCGCCGCCGTCGCAATCACCTTCTCCCCCAATCGTATCTGCCGCTG CTTCCGCTCTCCACCTTCACACAGTCGACCGACGTCAGTAGTCCGCTATCGATGCAGCGT CTGGCGTTTGGATCTGCTCGTCTCCGCCGCCGGTTACGCCGCCTCTCCGTCGATCTCCTA CGTGGTCCCGTTTGCTCCATAGCGGACTCCGCCTGCAAGTCCGCCGGCCATCGCATGATC CTGACGGCAGCTAGATCCAGTACCCTGTCCACCCGTCTCTCCTTCATCACCGAGGGACAT CACAATCTAGAAAAGGTAGACAAAAAATCGTATGTGGCGTTTGATTACCGGAGATTCCCA GAAATTGTGTGTGAGGTTTGGAAGTTCTCAAGTCTGTTGGTAGCCATTCGTTTGTGTAGC AAGTAAGCAACATTTGCTAGGACAGGGCATTTGTCGTAATCAGGCTATCCCTTGTCGCAG GTTGCAGCTTTCACGAACATATATCAGTAAACATACTGCTGCATTCAATCAACATATTAT CTTGTCATCTCCATATTTACACGAGGGATTAGTTAGCTTGTTCAGTGCTGGTATGCTAAA CTATAGACGCATTTGATTTTACATACTGCCTGCTGCATGTACCTGGGAATAATGAACATT ATTTGCTGCCAATTTCCTTTAACAACCAATTTTCTTCCTTTAGTTTCCTTCAATATTATA ATTTGTGTTTGTCTTTGATCTTAAATTAAAATCAGGCCATATGGTTGCATGAAATCAGGC CCATATCAATACTTATGTCTCCATAAATTATATATGTATATATATGTTCTCTCAAATACT TATAGAAGATTAATAAAATGTCATCTTAGGAAATTAATTTTTCTACCATTCCATGTACAC TTAGTTCAGTACCGATGATTGAATAGTAGTGCATCTGCATTATTTTATTCTTTCTGTTCA TGAAATTCATATTATTGCAGATCATTTCGGTACATGATAACTATTGCTCCTCGAAGACTG GGTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCCTCGAATACTGG GTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCGATGACCGGGTCC TTGTTGAAGGCTTTCAATTTTGGCATGTTCTGAATTCGAGCATGGGAGTGCAACCATGAT CATTCGCATGACCTGTCACTGACTCACTGTCACTTAACCTGTGGATGCATGGATGGGCCA ACGGTTGTCTTGTCAGATAGATCCTATGGGACTGCCCCTATGCTCATCTTCCTCCATCTG TGGAGCGACAAGTACCTTTGCTATATTCCTTTTTTAGATTTACAAATCAATTCCTAAAAA AAGAACTTCAGTACACAAATGGTCTCTCTGAACCATGAATTTTTCTTCAGTTAAAAATGG AATAGATATACTACGTGAAGAAATCATGCTTATAAATCTCTAATCTCTCCCTTGTATGGC TGAATGATTGATTTGTTTTGAAAGGCATTGCGATAATTATTGTATATTTGCACTGTGGTA GATTCATAATCCATACTTATTTTCTGAACATGTTCACATTGGACTACTTTTTGGATGTTT AGTATAGTGCATGCTGCCATGTACCAGCAGGCATGTGGAGAAGCATTTGTCTTCATAACT TGCAAATATGTGAAATATCAATTGAGGGGTAGTGGAGCGTATATAGAAATTGAGGGGTAG TGAAATATGTTTTTGCAGGAATTTAGCAAATGTTCTCTTTAACAACTGAAACTCATTTGT TGGGGGTTGACTGGGTGTAATGCAACTGAACGAATCTAGACAAATATATTGATTTTCCGG AAACTGTTTTTCATCAAAATATTACGTTGCATTGTCCATATTACCTTGATAGTGTCATGT TGCTCAACCAAATTACCATGTTTACGCCTTTTCTTTTTACCTGATGTTCTGCTTATTTTG CTCTATGGTAGTGATTATATGCAACTACGCCAGTCCTGTCCTCTGCTTTACATTATTCAT ATTACTAGAGATTACTAGACTGTTTATGTTTCCAAAGAGCAGCAGCGTGCGAATAGAGAT ATTTAGGTATATGATCTTTGTATCATATATTCATGTATCATGTATTCAGTAGTTAATATT GTGGCAAACTCTTAGGCTGAATCTGGGCCTGCTTGAAAGCTTGGTCCATAGATCAGAAAG GGTTTTTTTGGACCCACGAAAAATACAAGTGTAATATACTTACCTGTGTAAAGAATTTTG ATGCTGTCAATCTAGAAAAATAGATACTCTTAAGTAACCAATACAGACCCACTAACAGGG TGGATACCAGGGTGACGGTCGCCTCAGATTCGGAGCTGAGGGAATGGTGTAGGAGGAAGC GGATGGATCGAGCTGCTACACCCCCGCACTTCGCTGTCTCGATGTGCCCCGTCATTGGCC GCTTCGCCATGGCGGCGGGGTGACGAGATTCTTAAGTGTATCACGAATACTCAAAGTTAT ATTCTATATTGTACCGATTACCGAATATTTTTTTTATTTCTCTATGACCACAACAAATTA ATGGAATAA



consensusID : consensus_8539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 904
fasta sequence
                              [GCGCGGCTGCGAGCCTGCAACCTCCGTCCCCCTCTCCCTGCGCCTTCTCCCCTAACCCTATCCGCCGTCGCTCCCGCTCTAGCGCCGCCGTCGCAATCACCTTCTCCCCCAATCGTATCTGCCGCTGCTTCCGCTCTCCACCTTCACACAGTCGACCGACGTCAGTAGTCCGCTATCGATGCAGCGTCTGGCGTTTGGATCTGCTCGTCTCCGCCGCCGGTTACGCCGCCTCTCCGTCGATCTCCTACGTGGTCCCGTTTGCTCCATAGCGGACTCCGCCTGCAAGTCCGCCGGCCATCGCATGATCCTGACGGCAGCTAGATCCAGTACCCTGTCCACCCGTCACTCCTTCATCACCGAGGGACATCACAATCTAGAAAAGATCATTTCGGTACATGATAACTATTGCTCCTCGAAGACTGGGTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCCTCGAATACTGGGTCGCCGTTGAAGGCTNTCAATTTTGGCAAGTTCTGAATTCGAGCTCGATGACCGGGTCCTTGTTGAAGGCTTTCAATTTTGGCATGTTCTGAATTCGAGCATGGGAGTGCAACCATGATCATTCGCATGACCTGTCACTGACTCACTGTCACTTAACCTGGGTGGATACCAGGGTGACGGTCGCCTCAGATTCGGAGCTGAGGGAATGGTGTAGGAGGAAGCGGATGGATCGAGCTGCTACACCCCCGCACTTCNGCTGTCTCGATGTGCCCCGTCATTGGCCGCTTCGCCATGGCGGCGGGGTGACGAGATTCTTAAGTGTATCACGAATACTCAAAGTTATATTCTATATTGTACCGATTACCGAATATTTTTTTTATTTCTCTATGACCACAACAAATTAATGGAATAATTCTCTACA]

[+] EMBL CF308255             [GCGCGGCTGCGAGCCTGCAACCTCCGTCCCCCTCTCCCTGCGCCTTCTCCCCTAACCCTATCCGCCGTCGCTCCCGCTCTAGCGCCGCCGTCGCAATCACCTTCTCCCCCAATCGTATCTGCCGCTGCTTCCGCTCTCCACCTTCACACAGTCGACCGACGTCAGTAGTCCGCTATCGATGCAGCGTCTGGCGTTTGGATCTGCTCGTCTCCGCCGCCGGTTACGCCGCCTCTCCGTCGATCTCCTACGTGGTCCCGTTTGCTCCATAGCGGACTCCGCCTGCAAGTCCGCCGGCCATCGCATGATCCTGACGGCAGCTAGATCCAGTACCCTGTCCACCCGTCACTCCTTCATCACCGAGGGACATCACAATCTAGAAAAGATCATTTCGGTACATGATAACTATTGCTCCTCGAAGACTGGGTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCCTCGAATACTGGGTCGCCGTTGAAGGCTNTCAATTTTGGCAAGTTCTGAATTCGAGCTCGATGACCGGGTCCTTGTTGAAGGCTTTCAATTTTGGCATGTTCTGAATTCGAGCATGGGAGTGCAACCATGATCATTCGCATGACCTGTCA                                                                                                                                                                                                                                                                                            ]
[-] EMBL CF308254             [                                                                                                                                                                                                                                                                                                                                         CCCTGTCCACCCGTCACTCCTTCATCACCGAGGGACATCACAATCTAGAAAAGATCATTTCGGTACATGATAACTATTGCTCCTCGAAGACTGGGTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCCTCGAATACTGGGTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCGATGACCGGGTCCTTGTTGAAGGCTTTCAATTTTGGCATGTTCTGAATTCGAGCATGGGAGTGCAACCATGATCATTCGCATGACCTGTCACTGACTCACTGTCACTTAACCTGGGTGGATACCAGGGTGACGGTCGCCTCAGATTCGGAGCTGAGGGAATGGTGTAGGAGGAAGCGGATGGATCGAGCTGCTACACCCCCGCACTTCNGCTGTCTCGATGTGCCCCGTCATTGGCCGCTTCGCCATGGCGGCGGGGTGACGAGATTCTTAAGTGTATCACGAATACTCAAAGTTATATTCTATATTGTACCGATTACCGAATATTTTTTTTATTTCTCTATGACCACAACAAATTAATGGAATAATTCTCTACA]


>consensus_8539#1 GCGCGGCTGCGAGCCTGCAACCTCCGTCCCCCTCTCCCTGCGCCTTCTCCCCTAACCCTA TCCGCCGTCGCTCCCGCTCTAGCGCCGCCGTCGCAATCACCTTCTCCCCCAATCGTATCT GCCGCTGCTTCCGCTCTCCACCTTCACACAGTCGACCGACGTCAGTAGTCCGCTATCGAT GCAGCGTCTGGCGTTTGGATCTGCTCGTCTCCGCCGCCGGTTACGCCGCCTCTCCGTCGA TCTCCTACGTGGTCCCGTTTGCTCCATAGCGGACTCCGCCTGCAAGTCCGCCGGCCATCG CATGATCCTGACGGCAGCTAGATCCAGTACCCTGTCCACCCGTCACTCCTTCATCACCGA GGGACATCACAATCTAGAAAAGATCATTTCGGTACATGATAACTATTGCTCCTCGAAGAC TGGGTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCCTCGAATACT GGGTCGCCGTTGAAGGCTNTCAATTTTGGCAAGTTCTGAATTCGAGCTCGATGACCGGGT CCTTGTTGAAGGCTTTCAATTTTGGCATGTTCTGAATTCGAGCATGGGAGTGCAACCATG ATCATTCGCATGACCTGTCACTGACTCACTGTCACTTAACCTGGGTGGATACCAGGGTGA CGGTCGCCTCAGATTCGGAGCTGAGGGAATGGTGTAGGAGGAAGCGGATGGATCGAGCTG CTACACCCCCGCACTTCNGCTGTCTCGATGTGCCCCGTCATTGGCCGCTTCGCCATGGCG GCGGGGTGACGAGATTCTTAAGTGTATCACGAATACTCAAAGTTATATTCTATATTGTAC CGATTACCGAATATTTTTTTTATTTCTCTATGACCACAACAAATTAATGGAATAATTCTC TACA



consensusID : consensus_8539#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence
                              [CCGCCCACGCGTCCGGAATTTTGATGCTGTCATCTAAGAAAAATTCTTTACACAGGTAAGTATATTACACTTGTATTTTTCGTGGGTCCACAAAAAAATACAAGTGTAATATACTTACCTGTGTAAAGAATTTTGATGCTGTCATCTAAGAAAAATAGATACTCTTAAGTAACCCAAAAAA]

[+] EMBL BI813023             [CCGCCCACGCGTCCGGAATTTTGATGCTGTCATCTAAGAAAAATTCTTTACACAGGTAAGTATATTACACTTGTATTTTTCGTGGGTCCACAAAAAAATACAAGTGTAATATACTTACCTGTGTAAAGAATTTTGATGCTGTCATCTAAGAAAAATAGATACTCTTAAGTAACCCAAAAAA]


>consensus_8539#2 CCGCCCACGCGTCCGGAATTTTGATGCTGTCATCTAAGAAAAATTCTTTACACAGGTAAG TATATTACACTTGTATTTTTCGTGGGTCCACAAAAAAATACAAGTGTAATATACTTACCT GTGTAAAGAATTTTGATGCTGTCATCTAAGAAAAATAGATACTCTTAAGTAACCCAAAAA A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8539#0      TCGCTCCCGCTCTAGCGCCGCCGTCGCAATCACCTTCTCCCCCAATCGTATCTGCCGCTG 60
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      CTTCCGCTCTCCACCTTCACACAGTCGACCGACGTCAGTAGTCCGCTATCGATGCAGCGT 120
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      CTGGCGTTTGGATCTGCTCGTCTCCGCCGCCGGTTACGCCGCCTCTCCGTCGATCTCCTA 180
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      CGTGGTCCCGTTTGCTCCATAGCGGACTCCGCCTGCAAGTCCGCCGGCCATCGCATGATC 240
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      CTGACGGCAGCTAGATCCAGTACCCTGTCCACCCGTCTCTCCTTCATCACCGAGGGACAT 300
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      CACAATCTAGAAAAGGTAGACAAAAAATCGTATGTGGCGTTTGATTACCGGAGATTCCCA 360
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      GAAATTGTGTGTGAGGTTTGGAAGTTCTCAAGTCTGTTGGTAGCCATTCGTTTGTGTAGC 420
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      AAGTAAGCAACATTTGCTAGGACAGGGCATTTGTCGTAATCAGGCTATCCCTTGTCGCAG 480
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      GTTGCAGCTTTCACGAACATATATCAGTAAACATACTGCTGCATTCAATCAACATATTAT 540
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      CTTGTCATCTCCATATTTACACGAGGGATTAGTTAGCTTGTTCAGTGCTGGTATGCTAAA 600
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      CTATAGACGCATTTGATTTTACATACTGCCTGCTGCATGTACCTGGGAATAATGAACATT 660
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      ATTTGCTGCCAATTTCCTTTAACAACCAATTTTCTTCCTTTAGTTTCCTTCAATATTATA 720
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      ATTTGTGTTTGTCTTTGATCTTAAATTAAAATCAGGCCATATGGTTGCATGAAATCAGGC 780
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      CCATATCAATACTTATGTCTCCATAAATTATATATGTATATATATGTTCTCTCAAATACT 840
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      TATAGAAGATTAATAAAATGTCATCTTAGGAAATTAATTTTTCTACCATTCCATGTACAC 900
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      TTAGTTCAGTACCGATGATTGAATAGTAGTGCATCTGCATTATTTTATTCTTTCTGTTCA 960
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      TGAAATTCATATTATTGCAGATCATTTCGGTACATGATAACTATTGCTCCTCGAAGACTG 1020
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      GGTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCCTCGAATACTGG 1080
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      GTCGCCGTTGAAGGCTTTCAATTTTGGCAAGTTCTGAATTCGAGCTCGATGACCGGGTCC 1140
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      TTGTTGAAGGCTTTCAATTTTGGCATGTTCTGAATTCGAGCATGGGAGTGCAACCATGAT 1200
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      CATTCGCATGACCTGTCACTGACTCACTGTCACTTAACCTGTGGATGCATGGATGGGCCA 1260
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      ACGGTTGTCTTGTCAGATAGATCCTATGGGACTGCCCCTATGCTCATCTTCCTCCATCTG 1320
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      TGGAGCGACAAGTACCTTTGCTATATTCCTTTTTTAGATTTACAAATCAATTCCTAAAAA 1380
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      AAGAACTTCAGTACACAAATGGTCTCTCTGAACCATGAATTTTTCTTCAGTTAAAAATGG 1440
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      AATAGATATACTACGTGAAGAAATCATGCTTATAAATCTCTAATCTCTCCCTTGTATGGC 1500
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      TGAATGATTGATTTGTTTTGAAAGGCATTGCGATAATTATTGTATATTTGCACTGTGGTA 1560
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      GATTCATAATCCATACTTATTTTCTGAACATGTTCACATTGGACTACTTTTTGGATGTTT 1620
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      AGTATAGTGCATGCTGCCATGTACCAGCAGGCATGTGGAGAAGCATTTGTCTTCATAACT 1680
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ------------------------------------------------------------
                                                                                  

consensus_8539#0      TGCAAATATGTGAAATATCAATTGAGGGGTAGTGGAGCGTATATAGAAATTGAGGGGTAG 1740
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ---------------------------------------GCGCGGCTGCGAGCCTGCAAC 21
                                                                                  

consensus_8539#0      TGAAATATGTTTTTGCAGGAATTTAGCAAATGTTCTCTTTAACAACTGAAACTCATTTGT 1800
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      CTCCGTCCCCCTCTCCCTGCGCCTTCTCCCCTAACCCTATCCGCCGTCGCTCCCGCTCTA 81
                                                                                  

consensus_8539#0      TGGGGGTTGACTGGGTGTAATGCAACTGAACGAATCTAGACAAATATATTGATTTTCCGG 1860
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      GCGCCGCCGTCGCAATCACCTTCTCCCCCAATCGTATCTGCCGCTGCTTCCGCTCTCCAC 141
                                                                                  

consensus_8539#0      AAACTGTTTTTCATCAAAATATTACGTTGCATTGTCCATATTACCTTGATAGTGTCATGT 1920
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      CTTCACACAGTCGACCGACGTCAGTAGTCCGCTATCGATGCAGCGTCTGGCGTTTGGATC 201
                                                                                  

consensus_8539#0      TGCTCAACCAAATTACCATGTTTACGCCTTTTCTTTTTACCTGATGTTCTGCTTATTTTG 1980
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      TGCTCGTCTCCGCCGCCGGTTACGCCGCCTCTCCGTCGATCTCCTACGTGGTCCCGTTTG 261
                                                                                  

consensus_8539#0      CTCTATGGTAGTGATTATATGCAACTACGCCAGTCCTGTCCTCTGCTTTACATTATTCAT 2040
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      CTCCATAGCGGACTCCGCCTGCAAGTCCGCCGGCCATCGCATGATCCTGACGGCAGCTAG 321
                                                                                  

consensus_8539#0      AT----TACTAGAGATTACTAGACTGTTTATGTTTCCAAAGAGCAGCAGCGTGCGAATAG 2096
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      ATCCAGTACCCTGTCCACCCGTCACTCCTTCATCACCGAGGGACATCACAATCTAGAAAA 381
                                                                                  

consensus_8539#0      AGATATTTAGGTATATGAT---CTTTGTATCATATATTCATGTATCATGTATTCAGTAGT 2153
consensus_8539#2      ----------------------------------------CCGCCCACGCGTCCGG---- 16
consensus_8539#1      GATCATTTCGGTACATGATAACTATTGCTCCTCGAAGACTGGGTCGCCGTTGAAGGCTTT 441
                                                                      *      *    

consensus_8539#0      TAATATTGTGGCAAAC---TCTTAGGCT----GAATCTGGGCCTGCTTGAAAGCTTGGTC 2206
consensus_8539#2      -AATTTTGATGCTGTC---ATCTAAGAA----AAATTC---TTTAC---ACAGGTAAGT- 61
consensus_8539#1      CAATTTTGGCAAGTTCTGAATTCGAGCTCCTCGAATACTGGGTCGCCGTTGAAGGCTNTC 501
                       *** ***       *         *       ***         *     *      * 

consensus_8539#0      CATAGATCAGAAAGGGTTTTTTTGGACCCACGAAAAA-TACAAGTGTAATATACTTACCT 2265
consensus_8539#2      -ATATTACACTTGTATTTTTCGTGGGTCCACAAAAAAATACAAGTGTAATATACTTACCT 120
consensus_8539#1      AATTTTGGCAAGTTCTGAATTCGAGCTCGATGACCGGGTCCTTGTTGAAGGCTTTCAATT 561
                       **                *    *  * *  *     * *  **  **     * *  *

consensus_8539#0      GTGTAAAGAATTTTGATGCTGTCAATCTAG---AAAAATAGATACTCTTAAG-----TAA 2317
consensus_8539#2      GTGTAAAGAATTTTGATGCTGTCATCTAAG---AAAAATAGATACTCTTAAG-----TAA 172
consensus_8539#1      TTG-GCATGTTCTGAATTCGAGCATGGGAGTGCAACCATGATCATTCGCATGACCTGTCA 620
                       **   *   * *  ** *   **    **   **  **    * **  * *     * *

consensus_8539#0      CCAATACAGACCCACTAA--CAGGGTGGATACCAGGGTGACGGTCGCCTCAGATTCGGAG 2375
consensus_8539#2      CCCAAAAAA--------------------------------------------------- 181
consensus_8539#1      CTGACTCACTGTCACTTAACCTGGGTGGATACCAGGGTGACGGTCGCCTCAGATTCGGAG 680
                      *  *   *                                                    

consensus_8539#0      CTGAGGGAATGGTGTAGGAGGAAGCGGATGGATCGAGCTGCTACACCCCCGCACTTCG-C 2434
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      CTGAGGGAATGGTGTAGGAGGAAGCGGATGGATCGAGCTGCTACACCCCCGCACTTCNGC 740
                                                                                  

consensus_8539#0      TGTCTCGATGTGCCCCGTCATTGGCCGCTTCGCCATGGCGGCGGGGTGACGAGATTCTTA 2494
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      TGTCTCGATGTGCCCCGTCATTGGCCGCTTCGCCATGGCGGCGGGGTGACGAGATTCTTA 800
                                                                                  

consensus_8539#0      AGTGTATCACGAATACTCAAAGTTATATTCTATATTGTACCGATTACCGAATATTTTTTT 2554
consensus_8539#2      ------------------------------------------------------------
consensus_8539#1      AGTGTATCACGAATACTCAAAGTTATATTCTATATTGTACCGATTACCGAATATTTTTTT 860
                                                                                  

consensus_8539#0      TATTTCTCTATGACCACAACAAATTAATGGAATAA--------- 2589
consensus_8539#2      --------------------------------------------
consensus_8539#1      TATTTCTCTATGACCACAACAAATTAATGGAATAATTCTCTACA 904
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)