These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 525 fasta sequence [GCAAGTGCAGATCCACAGTCTAAATCTTCC-AGTGAACCAGTCCATTTCACCAAGAGTGTCACAAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAGGTTTGTTCTGGAAGGATGTTGAGAAACTGATTGATGACTATAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATATCATGAAA----CAACCATTCGCCTGCTACATCTGTTAGTTTTTACATATGACTAGCAAGGAATCGCTTTAT-AAAATCAAAGCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAAATGATTGTGTNAAATTCTTGATCGNGTTTCTGATGAGAAT-CGACGGACGGTTCTAATTTTCTGAGCATTTCTTAATCTAGTTNTAGCAATTCCCCGCTTAGCTTTTNTAAAAAAAAAAAAAAAAAAAAAAAAAAGGCGGGCCCGCCCCCGGGGGNGGAGCCTTCANGCTTTTGGTTCCCNTTTANTNGNNGGGTTAA] [+] EMBL CB096845 [GCAAGTGCAGATCCACAGTCTAAATCTTCC AGTGAGCCAGTCCATTTCACCAAGAGTGTCACAAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAGGTTTGTTCTGGAAGGATGTTGAGAAACTGATTGATGACTATAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATATCATGAAA CAACCATTCGCCTGCTACATCTGTTAGTTTTTACATATGACTAGCAAGGAATCGCTTTATAAAAATCAAAGCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAAATGATTGTGTNAAATTCTTGATCGNGTTTCTGATGAGAAT CGACGGACGGTTCTAATTTTCTGAGCATTTCTTAATCTAGTTNTAGCAATTCCCCGCTTAGCTTTTNTAAAAAAAAAAAAAAAAAAAAAAAAAAGGCGGGCCCGCCCCCGGGGGNGGAGCCTTCANGCTTTTGGTTCCCNTTTANTNGNNGGGTTAA] [+] EMBL BI806139 [GCAAGT CAGATCCACATTCTAAATCTTCCAAGTGAACCAGTCCATTTCACTAAGAGTGTCACAAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAGGTTTGTTCTGGAAGGATGTTGAGAAACTGATTGATGACTACAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATGTCATGAAACAACCAACCATTCACCTACTACATCTGTTAGTTTTTGCATATGACTAGCAAGGAATCGCTTTAT AAAATCAAATCTTAACTcaaaa ] [+] EMBL BI800240 [ cAGTGCAGATCCACAGTCTAAATCTTCC AGTGAACCAGTCCATTTCACCAAGAGTGTCACAAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAGGTTTGTTCTGGAAGGATGTTGAGAAACTGATTGATGACTATAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATATCATGAAA CAACCATTCGCCTGCTACATCTGTTAGTTTTTACATATGACTAGCAAGGAATCGCTTTAT AAAATC AAGCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCT GTA TAACTGCTG AAATGA TGTGT CATTCTTGATCGTGTTTCTGATGAGAATCCGACGGACGGTTCTAAaaaa ] consensusID : consensus_8555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [TGCAGGATNCGGCNCGAGTTCACTAAGAGTGTCACNAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAAGTTTGTTCTGGAAAGATGTTGAGAAACTGATTGATGACTACAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATGTCATGAAACAACCAACCATTCACCTACTACATCTGTTAGTTTTTGCATATGACTAGCAAGGAATCGCTTTATAAAATCAAATCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAATGATGTGTCAATTCCTGAGGTCCTGGT] [+] EMBL AA753158 [TGCAGGATNCGGCNCGAGTTCACTAAGAGTGTCACNAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAAGTTTGTTCTGGAAAGATGTTGAGAAACTGATTGATGACTACAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATGTCATGAAACAACCAACCATTCACCTACTACATCTGTTAGTTTTTGCATATGACTAGCAAGGAATCGCTTTATAAAATCAAATCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAATGATGTGTCAATTCCTGAGGTCCTGGT] consensusID : consensus_8555#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [AGAACGAGACAAGGGGGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATACCATGAAACAACCATTCGCCTGCTACATCTGTTAGTTTTTACATATGACTAGCAAGGAATCGCTTTATAAAATCAAAGCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAATGATGTGTCAATTCTTGATCGTGTTTTTGATGAGAATCGACGGACGGTTCTAATTTCAAAAAAAAAAAAA] [-] EMBL CA761059 [AGAACGAGACAAGGGGGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATACCATGAAACAACCATTCGCCTGCTACATCTGTTAGTTTTTACATATGACTAGCAAGGAATCGCTTTATAAAATCAAAGCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAATGATGTGTCAATTCTTGATCGTGTTTTTGATGAGAATCGACGGACGGTTCTAATTTCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8555#0 GCAAGTGCAGATCCACAGTCTAAATCTTCCAGTGAACCAGTCCATTTCACCAAGAGTGTC 60 consensus_8555#1 ---------------------------TGCAGGATNCGGCNCGAGTTCACTAAGAGTGTC 33 consensus_8555#2 ------------------------------------------------------------ consensus_8555#0 ACAAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAGGTTTGTTCTGGAAGGATGTTGAG 120 consensus_8555#1 ACNAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAAGTTTGTTCTGGAAAGATGTTGAG 93 consensus_8555#2 ------------------------------------------------------------ consensus_8555#0 AAACTGATTGATGACTATAAC-AGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTT 179 consensus_8555#1 AAACTGATTGATGACTACAAC-AGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTT 152 consensus_8555#2 ----------------AGAACGAGACAAGGGGGGAGCAAATGAAAGGATAGCTTGTACTT 44 * *** ** * **************************** consensus_8555#0 ATTGATATCAATATATCATGAAACAACCA----TTCGCCTGCTACATCTGTTAGTTTTTA 235 consensus_8555#1 ATTGATATCAATATGTCATGAAACAACCAACCATTCACCTACTACATCTGTTAGTTTTTG 212 consensus_8555#2 ATTGATATCAATATACCATGAAACAACCA----TTCGCCTGCTACATCTGTTAGTTTTTA 100 ************** ************* *** *** ****************** consensus_8555#0 CATATGACTAGCAAGGAATCGCTTTATAAAATCAAAGCTTAACTGCATTTTGTTAGACAA 295 consensus_8555#1 CATATGACTAGCAAGGAATCGCTTTATAAAATCAAATCTTAACTGCATTTTGTTAGACAA 272 consensus_8555#2 CATATGACTAGCAAGGAATCGCTTTATAAAATCAAAGCTTAACTGCATTTTGTTAGACAA 160 ************************************ *********************** consensus_8555#0 TTTTGTGACATGTCCTGGTATTAACTGCTGAAAATGATTGTGTNAAATTCTTGATCGNGT 355 consensus_8555#1 TTTTGTGACATGTCCTGGTATTAACTGCTGAAA-TGAT-GTGTCAATTCCT-----GAGG 325 consensus_8555#2 TTTTGTGACATGTCCTGGTATTAACTGCTGAAA-TGAT-GTGTCAATTCTT-GATCGTGT 217 ********************************* **** **** ** * * * * consensus_8555#0 TTCTGATGAGAATCGACGGACGGTTCTAATTTTCTGAGCATTTCTTAATCTAGTTNTAGC 415 consensus_8555#1 TCCTGGT----------------------------------------------------- 332 consensus_8555#2 TTTTGATGAGAATCGACGGACGGTTCTAATTTCAAAAAAAAAAAAA-------------- 263 * ** * consensus_8555#0 AATTCCCCGCTTAGCTTTTNTAAAAAAAAAAAAAAAAAAAAAAAAAAGGCGGGCCCGCCC 475 consensus_8555#1 ------------------------------------------------------------ consensus_8555#2 ------------------------------------------------------------ consensus_8555#0 CCGGGGGNGGAGCCTTCANGCTTTTGGTTCCCNTTTANTNGNNGGGTTAA 525 consensus_8555#1 -------------------------------------------------- consensus_8555#2 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||