These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 423 fasta sequence [TGTCTGGTGGTNGGTCTGGTGGCTCGCAAGCAGGATCACAGGNCGNAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGTGATCCTCTACTCCTGTTAACTTGGATATCNTGTTCCTCTAATTCTGTATGTNAATTGCNCTATCGACCTNGGTTTCAATTAAACGGCGGGGTCGTTAGTTNTNTNTTNAAAAAAA] [+] EMBL D42895 [TGTCTGGTGGTNGGTCTGGTGGCTCGCAAGCAGGATCACAGGNCGNAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGTGATCCTCTACTCCTGTTAACTTGGATATC ] [+] EMBL AU166962 [ AGGATCACAGGGCGGAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGANAGGAACATGGGCAACNCNANCTGGGNGTGATCCTCTACTCCTGTTAACTTGGANATCNTGTTCCTCTAATTCTGTATGTNAATTGCNCTATCGACCTNGGTTTCAATTAAACGGCGGGGTCGTTAGTTNTNTNTTNAAAAAAA] [+] EMBL CB680356 [ AGTATCCTGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCTAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGTGATCCTCTACTCCT ] [+] EMBL CB685445 [ AGTCTGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGTGATCCTCTACTCCT ] consensusID : consensus_8559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [AGGATCACAGGGCGGAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTNTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGGTGATCCTCTACTCCTGTTAACTTGGATATCTTGTTCCTCTAAAAAAAAAAAAAA] [+] EMBL AU181995 [AGGATCACAGGGCGGAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTNTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGGTGATCCTCTACTCCTGTTAACTTGGATATCTTGTTCCTCTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8559#0 TGTCTGGTGGTNGGTCTGGTGGCTCGCAAGCAGGATCACAGGNCGNAGGTGACCAGGCTC 60 consensus_8559#1 -------------------------------AGGATCACAGGGCGGAGGTGACCAGGCTC 29 *********** ** ************** consensus_8559#0 CTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGT 120 consensus_8559#1 CTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGT 89 ************************************************************ consensus_8559#0 AGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGT 180 consensus_8559#1 AGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGT 149 ************************************************************ consensus_8559#0 TCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATG 240 consensus_8559#1 TCTGGGGATTTTGTTNTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATG 209 *************** ******************************************** consensus_8559#0 TACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAG 300 consensus_8559#1 TACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAG 269 ************************************************************ consensus_8559#0 CTGGGCG-TGATCCTCTACTCCTGTTAACTTGGATATCNTGTTCCTCTAATTCTGTATGT 359 consensus_8559#1 CTGGGCGGTGATCCTCTACTCCTGTTAACTTGGATATCTTGTTCCTCTAAAAAAAAAAAA 329 ******* ****************************** *********** * consensus_8559#0 NAATTGCNCTATCGACCTNGGTTTCAATTAAACGGCGGGGTCGTTAGTTNTNTNTTNAAA 419 consensus_8559#1 AA---------------------------------------------------------- 331 * consensus_8559#0 AAAA 423 consensus_8559#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||