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Oryza sativa
cluster # 856 cluster # 856       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_856#0 length = 1173 sequences # 1  
consensus_856#1 length = 393 sequences # 1  

consensusID : consensus_856#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1173
fasta sequence
                              [ACACTCGCAGGCCGCCGCCTCCTCCTGCAGCGATCCGCGGCGGCGGCGGGGGGGAGGTGGCGGCTGCTGGGGACGGCGGCGGAGGCGTCCTCCTCTCCGGGAGGGAGGGAAGAGGCGGGCGGGGGAGGGGGAGATGAGATCTACCTGAAGAAGCCGGCGGCGGCGGCGGTGGTAACGACGCGGGACGAGACGTCGGTGGCGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGCGGTTCTACCGGGAGGCCACCGTGCGGCGCGCCGACGACGGCAACGGGTGGTCGGTGATGCTCGACTACCGCACCCTCAAGTCGCCGGCGAAGCGGCCGCTCAAGCTGCAGTCGCGGACGCTCGCCATGGCCATCGCCGCCGAGTGGGAGTACCAGGAAGCAGATGGAATCCGGCCTTTTACAATGCCTCTTATGAAGCTTGCTTGCACTGCACTGGAACGAGTTCCATTGACACGAAAAAAAATAATTGATAATTTGATGAAGAAATTCCACCAAGATTTGGTATTCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGGAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGAGTTTGGCTTCAAGCCTGTTGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTAGAAACTGTTTTGAAGAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCATTCCCTGGTAATCCCTCTCGCAATATTCAGAGGGAAGCTGGGAATTGAGCAGGCAATTGAATTGATCAGACTTGAAGAAGATCACCAGGTTGATAGATGGGGCTTGGTTGAAGGAGGTCATGATGTTGATATTGCCGATCTCAAAGTGCAAATGTCATCAGCTGTTGTGTTTCTTTTACTTTCATGGCAACTATAGTTACTTATGTAGCGAATCTACGGATCGGTTGGTTTTTTTTTGTTTGATCTCGACTTTCGAGCTTGTATCAACTTTTGTGACGACTGGTAGAATAAGACTTCCCTGCAGATGGTTAATAGGGAGACAGAGCTCCAGAATTTAATCTGTTGGATTCTGGTGTCTCAAACAGTATGTTTGTTAAGATATAAAAACTCAACCTGTGGAATACTTATCATT]

[+] EMBL AK064653             [ACACTCGCAGGCCGCCGCCTCCTCCTGCAGCGATCCGCGGCGGCGGCGGGGGGGAGGTGGCGGCTGCTGGGGACGGCGGCGGAGGCGTCCTCCTCTCCGGGAGGGAGGGAAGAGGCGGGCGGGGGAGGGGGAGATGAGATCTACCTGAAGAAGCCGGCGGCGGCGGCGGTGGTAACGACGCGGGACGAGACGTCGGTGGCGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGCGGTTCTACCGGGAGGCCACCGTGCGGCGCGCCGACGACGGCAACGGGTGGTCGGTGATGCTCGACTACCGCACCCTCAAGTCGCCGGCGAAGCGGCCGCTCAAGCTGCAGTCGCGGACGCTCGCCATGGCCATCGCCGCCGAGTGGGAGTACCAGGAAGCAGATGGAATCCGGCCTTTTACAATGCCTCTTATGAAGCTTGCTTGCACTGCACTGGAACGAGTTCCATTGACACGAAAAAAAATAATTGATAATTTGATGAAGAAATTCCACCAAGATTTGGTATTCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGGAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGAGTTTGGCTTCAAGCCTGTTGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTAGAAACTGTTTTGAAGAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCATTCCCTGGTAATCCCTCTCGCAATATTCAGAGGGAAGCTGGGAATTGAGCAGGCAATTGAATTGATCAGACTTGAAGAAGATCACCAGGTTGATAGATGGGGCTTGGTTGAAGGAGGTCATGATGTTGATATTGCCGATCTCAAAGTGCAAATGTCATCAGCTGTTGTGTTTCTTTTACTTTCATGGCAACTATAGTTACTTATGTAGCGAATCTACGGATCGGTTGGTTTTTTTTTGTTTGATCTCGACTTTCGAGCTTGTATCAACTTTTGTGACGACTGGTAGAATAAGACTTCCCTGCAGATGGTTAATAGGGAGACAGAGCTCCAGAATTTAATCTGTTGGATTCTGGTGTCTCAAACAGTATGTTTGTTAAGATATAAAAACTCAACCTGTGGAATACTTATCATT]


>consensus_856#0 ACACTCGCAGGCCGCCGCCTCCTCCTGCAGCGATCCGCGGCGGCGGCGGGGGGGAGGTGG CGGCTGCTGGGGACGGCGGCGGAGGCGTCCTCCTCTCCGGGAGGGAGGGAAGAGGCGGGC GGGGGAGGGGGAGATGAGATCTACCTGAAGAAGCCGGCGGCGGCGGCGGTGGTAACGACG CGGGACGAGACGTCGGTGGCGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAG CGGTTCTACCGGGAGGCCACCGTGCGGCGCGCCGACGACGGCAACGGGTGGTCGGTGATG CTCGACTACCGCACCCTCAAGTCGCCGGCGAAGCGGCCGCTCAAGCTGCAGTCGCGGACG CTCGCCATGGCCATCGCCGCCGAGTGGGAGTACCAGGAAGCAGATGGAATCCGGCCTTTT ACAATGCCTCTTATGAAGCTTGCTTGCACTGCACTGGAACGAGTTCCATTGACACGAAAA AAAATAATTGATAATTTGATGAAGAAATTCCACCAAGATTTGGTATTCTGCCGTTCACCT GATGATAATGAGCTGACTGTAGGAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATA CTAGACTGGGTAAACACTGAGTTTGGCTTCAAGCCTGTTGTATACACAAGCTTTTTTGGT GGAAAGCAAGATGAAGGGTTAGCTAATGCTGTAGAAACTGTTTTGAAGAATACCACCGAC TTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCATTCCCTGGTAATCCCTCTC GCAATATTCAGAGGGAAGCTGGGAATTGAGCAGGCAATTGAATTGATCAGACTTGAAGAA GATCACCAGGTTGATAGATGGGGCTTGGTTGAAGGAGGTCATGATGTTGATATTGCCGAT CTCAAAGTGCAAATGTCATCAGCTGTTGTGTTTCTTTTACTTTCATGGCAACTATAGTTA CTTATGTAGCGAATCTACGGATCGGTTGGTTTTTTTTTGTTTGATCTCGACTTTCGAGCT TGTATCAACTTTTGTGACGACTGGTAGAATAAGACTTCCCTGCAGATGGTTAATAGGGAG ACAGAGCTCCAGAATTTAATCTGTTGGATTCTGGTGTCTCAAACAGTATGTTTGTTAAGA TATAAAAACTCAACCTGTGGAATACTTATCATT



consensusID : consensus_856#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence
                              [TCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGTAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGANTTTGGCTTCGGNGCCTGTNGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTANAAACTGTTTTGAANAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCANTCCCTGGTAATCCCTCTCNCNATATTCNNANGGAAGCTGGGAATTGAACNNGCATTGATGATCNGACTGAAAATCCCACGTGATANATGGCTGTGAGAGTCTGATGTATATGCCGATCTCAAGTGCAATGTCTCAGCTGTTGTGTTCTTTACTTCA]

[+] EMBL AA751686             [TCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGTAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGANTTTGGCTTCGGNGCCTGTNGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTANAAACTGTTTTGAANAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCANTCCCTGGTAATCCCTCTCNCNATATTCNNANGGAAGCTGGGAATTGAACNNGCATTGATGATCNGACTGAAAATCCCACGTGATANATGGCTGTGAGAGTCTGATGTATATGCCGATCTCAAGTGCAATGTCTCAGCTGTTGTGTTCTTTACTTCA]


>consensus_856#1 TCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGTAGTTTATCAAAGACAGAAGGAGA AAATTGACCCTATACTAGACTGGGTAAACACTGANTTTGGCTTCGGNGCCTGTNGTATAC ACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTANAAACTGTTTTG AANAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCANTCC CTGGTAATCCCTCTCNCNATATTCNNANGGAAGCTGGGAATTGAACNNGCATTGATGATC NGACTGAAAATCCCACGTGATANATGGCTGTGAGAGTCTGATGTATATGCCGATCTCAAG TGCAATGTCTCAGCTGTTGTGTTCTTTACTTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_856#0      ACACTCGCAGGCCGCCGCCTCCTCCTGCAGCGATCCGCGGCGGCGGCGGGGGGGAGGTGG 60
consensus_856#1      ------------------------------------------------------------
                                                                                 

consensus_856#0      CGGCTGCTGGGGACGGCGGCGGAGGCGTCCTCCTCTCCGGGAGGGAGGGAAGAGGCGGGC 120
consensus_856#1      ------------------------------------------------------------
                                                                                 

consensus_856#0      GGGGGAGGGGGAGATGAGATCTACCTGAAGAAGCCGGCGGCGGCGGCGGTGGTAACGACG 180
consensus_856#1      ------------------------------------------------------------
                                                                                 

consensus_856#0      CGGGACGAGACGTCGGTGGCGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAG 240
consensus_856#1      ------------------------------------------------------------
                                                                                 

consensus_856#0      CGGTTCTACCGGGAGGCCACCGTGCGGCGCGCCGACGACGGCAACGGGTGGTCGGTGATG 300
consensus_856#1      ------------------------------------------------------------
                                                                                 

consensus_856#0      CTCGACTACCGCACCCTCAAGTCGCCGGCGAAGCGGCCGCTCAAGCTGCAGTCGCGGACG 360
consensus_856#1      ------------------------------------------------------------
                                                                                 

consensus_856#0      CTCGCCATGGCCATCGCCGCCGAGTGGGAGTACCAGGAAGCAGATGGAATCCGGCCTTTT 420
consensus_856#1      ------------------------------------------------------------
                                                                                 

consensus_856#0      ACAATGCCTCTTATGAAGCTTGCTTGCACTGCACTGGAACGAGTTCCATTGACACGAAAA 480
consensus_856#1      ------------------------------------------------------------
                                                                                 

consensus_856#0      AAAATAATTGATAATTTGATGAAGAAATTCCACCAAGATTTGGTATTCTGCCGTTCACCT 540
consensus_856#1      ----------------------------------------------TCTGCCGTTCACCT 14
                                                                   **************

consensus_856#0      GATGATAATGAGCTGACTGTAGGAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATA 600
consensus_856#1      GATGATAATGAGCTGACTGTAGTAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATA 74
                     ********************** *************************************

consensus_856#0      CTAGACTGGGTAAACACTGAGTTTGGCTTCA-AGCCTGTTGTATACACAAGCTTTTTTGG 659
consensus_856#1      CTAGACTGGGTAAACACTGANTTTGGCTTCGGNGCCTGTNGTATACACAAGCTTTTTTGG 134
                     ******************** *********   ****** ********************

consensus_856#0      TGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTAGAAACTGTTTTGAAGAATACCACCGA 719
consensus_856#1      TGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTANAAACTGTTTTGAANAATACCACCGA 194
                     ********************************** ************* ***********

consensus_856#0      CTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCATTCCCTGGTAATCCCTCT 779
consensus_856#1      CTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCANTCCCTGGTAATCCCTCT 254
                     ****************************************** *****************

consensus_856#0      CGCAATATTCAGAGGGAAGCTGGGAATTGAGCAGGCAATTGAATTGATCAGACTTGAAGA 839
consensus_856#1      CNCNATATTCNNANGGAAGCTGGGAATTGAACNNGCA-TTGA--TGATCNGACT----GA 307
                     * * ******  * **************** *  *** ****  ***** ****    **

consensus_856#0      AGATCACCAGGTTGATAGATGGGGCTTGGTTGAAGGAGGTCATGATGTTGATATTGCCGA 899
consensus_856#1      AAATC-CCACGT-GATANATGG-------CTGTGAGAGTC--TGATGT--ATAT-GCCGA 353
                     * *** *** ** **** ****        **   ***    ******  **** *****

consensus_856#0      TCTCAAAGTGCAAATGTCATCAGCTGTTGTGTTTCTTTTACTTTCATGGCAACTATAGTT 959
consensus_856#1      TCTCAA-GTGCAA-TGTC-TCAGCTGTTGTGTTC--TTTACTTCA--------------- 393
                     ****** ****** **** **************   *******                 

consensus_856#0      ACTTATGTAGCGAATCTACGGATCGGTTGGTTTTTTTTTGTTTGATCTCGACTTTCGAGC 1019
consensus_856#1      ------------------------------------------------------------
                                                                                 

consensus_856#0      TTGTATCAACTTTTGTGACGACTGGTAGAATAAGACTTCCCTGCAGATGGTTAATAGGGA 1079
consensus_856#1      ------------------------------------------------------------
                                                                                 

consensus_856#0      GACAGAGCTCCAGAATTTAATCTGTTGGATTCTGGTGTCTCAAACAGTATGTTTGTTAAG 1139
consensus_856#1      ------------------------------------------------------------
                                                                                 

consensus_856#0      ATATAAAAACTCAACCTGTGGAATACTTATCATT 1173
consensus_856#1      ----------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)