These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1173 fasta sequence [ACACTCGCAGGCCGCCGCCTCCTCCTGCAGCGATCCGCGGCGGCGGCGGGGGGGAGGTGGCGGCTGCTGGGGACGGCGGCGGAGGCGTCCTCCTCTCCGGGAGGGAGGGAAGAGGCGGGCGGGGGAGGGGGAGATGAGATCTACCTGAAGAAGCCGGCGGCGGCGGCGGTGGTAACGACGCGGGACGAGACGTCGGTGGCGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGCGGTTCTACCGGGAGGCCACCGTGCGGCGCGCCGACGACGGCAACGGGTGGTCGGTGATGCTCGACTACCGCACCCTCAAGTCGCCGGCGAAGCGGCCGCTCAAGCTGCAGTCGCGGACGCTCGCCATGGCCATCGCCGCCGAGTGGGAGTACCAGGAAGCAGATGGAATCCGGCCTTTTACAATGCCTCTTATGAAGCTTGCTTGCACTGCACTGGAACGAGTTCCATTGACACGAAAAAAAATAATTGATAATTTGATGAAGAAATTCCACCAAGATTTGGTATTCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGGAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGAGTTTGGCTTCAAGCCTGTTGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTAGAAACTGTTTTGAAGAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCATTCCCTGGTAATCCCTCTCGCAATATTCAGAGGGAAGCTGGGAATTGAGCAGGCAATTGAATTGATCAGACTTGAAGAAGATCACCAGGTTGATAGATGGGGCTTGGTTGAAGGAGGTCATGATGTTGATATTGCCGATCTCAAAGTGCAAATGTCATCAGCTGTTGTGTTTCTTTTACTTTCATGGCAACTATAGTTACTTATGTAGCGAATCTACGGATCGGTTGGTTTTTTTTTGTTTGATCTCGACTTTCGAGCTTGTATCAACTTTTGTGACGACTGGTAGAATAAGACTTCCCTGCAGATGGTTAATAGGGAGACAGAGCTCCAGAATTTAATCTGTTGGATTCTGGTGTCTCAAACAGTATGTTTGTTAAGATATAAAAACTCAACCTGTGGAATACTTATCATT] [+] EMBL AK064653 [ACACTCGCAGGCCGCCGCCTCCTCCTGCAGCGATCCGCGGCGGCGGCGGGGGGGAGGTGGCGGCTGCTGGGGACGGCGGCGGAGGCGTCCTCCTCTCCGGGAGGGAGGGAAGAGGCGGGCGGGGGAGGGGGAGATGAGATCTACCTGAAGAAGCCGGCGGCGGCGGCGGTGGTAACGACGCGGGACGAGACGTCGGTGGCGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGCGGTTCTACCGGGAGGCCACCGTGCGGCGCGCCGACGACGGCAACGGGTGGTCGGTGATGCTCGACTACCGCACCCTCAAGTCGCCGGCGAAGCGGCCGCTCAAGCTGCAGTCGCGGACGCTCGCCATGGCCATCGCCGCCGAGTGGGAGTACCAGGAAGCAGATGGAATCCGGCCTTTTACAATGCCTCTTATGAAGCTTGCTTGCACTGCACTGGAACGAGTTCCATTGACACGAAAAAAAATAATTGATAATTTGATGAAGAAATTCCACCAAGATTTGGTATTCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGGAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGAGTTTGGCTTCAAGCCTGTTGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTAGAAACTGTTTTGAAGAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCATTCCCTGGTAATCCCTCTCGCAATATTCAGAGGGAAGCTGGGAATTGAGCAGGCAATTGAATTGATCAGACTTGAAGAAGATCACCAGGTTGATAGATGGGGCTTGGTTGAAGGAGGTCATGATGTTGATATTGCCGATCTCAAAGTGCAAATGTCATCAGCTGTTGTGTTTCTTTTACTTTCATGGCAACTATAGTTACTTATGTAGCGAATCTACGGATCGGTTGGTTTTTTTTTGTTTGATCTCGACTTTCGAGCTTGTATCAACTTTTGTGACGACTGGTAGAATAAGACTTCCCTGCAGATGGTTAATAGGGAGACAGAGCTCCAGAATTTAATCTGTTGGATTCTGGTGTCTCAAACAGTATGTTTGTTAAGATATAAAAACTCAACCTGTGGAATACTTATCATT] consensusID : consensus_856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [TCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGTAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGANTTTGGCTTCGGNGCCTGTNGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTANAAACTGTTTTGAANAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCANTCCCTGGTAATCCCTCTCNCNATATTCNNANGGAAGCTGGGAATTGAACNNGCATTGATGATCNGACTGAAAATCCCACGTGATANATGGCTGTGAGAGTCTGATGTATATGCCGATCTCAAGTGCAATGTCTCAGCTGTTGTGTTCTTTACTTCA] [+] EMBL AA751686 [TCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGTAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGANTTTGGCTTCGGNGCCTGTNGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTANAAACTGTTTTGAANAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCANTCCCTGGTAATCCCTCTCNCNATATTCNNANGGAAGCTGGGAATTGAACNNGCATTGATGATCNGACTGAAAATCCCACGTGATANATGGCTGTGAGAGTCTGATGTATATGCCGATCTCAAGTGCAATGTCTCAGCTGTTGTGTTCTTTACTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_856#0 ACACTCGCAGGCCGCCGCCTCCTCCTGCAGCGATCCGCGGCGGCGGCGGGGGGGAGGTGG 60 consensus_856#1 ------------------------------------------------------------ consensus_856#0 CGGCTGCTGGGGACGGCGGCGGAGGCGTCCTCCTCTCCGGGAGGGAGGGAAGAGGCGGGC 120 consensus_856#1 ------------------------------------------------------------ consensus_856#0 GGGGGAGGGGGAGATGAGATCTACCTGAAGAAGCCGGCGGCGGCGGCGGTGGTAACGACG 180 consensus_856#1 ------------------------------------------------------------ consensus_856#0 CGGGACGAGACGTCGGTGGCGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAG 240 consensus_856#1 ------------------------------------------------------------ consensus_856#0 CGGTTCTACCGGGAGGCCACCGTGCGGCGCGCCGACGACGGCAACGGGTGGTCGGTGATG 300 consensus_856#1 ------------------------------------------------------------ consensus_856#0 CTCGACTACCGCACCCTCAAGTCGCCGGCGAAGCGGCCGCTCAAGCTGCAGTCGCGGACG 360 consensus_856#1 ------------------------------------------------------------ consensus_856#0 CTCGCCATGGCCATCGCCGCCGAGTGGGAGTACCAGGAAGCAGATGGAATCCGGCCTTTT 420 consensus_856#1 ------------------------------------------------------------ consensus_856#0 ACAATGCCTCTTATGAAGCTTGCTTGCACTGCACTGGAACGAGTTCCATTGACACGAAAA 480 consensus_856#1 ------------------------------------------------------------ consensus_856#0 AAAATAATTGATAATTTGATGAAGAAATTCCACCAAGATTTGGTATTCTGCCGTTCACCT 540 consensus_856#1 ----------------------------------------------TCTGCCGTTCACCT 14 ************** consensus_856#0 GATGATAATGAGCTGACTGTAGGAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATA 600 consensus_856#1 GATGATAATGAGCTGACTGTAGTAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATA 74 ********************** ************************************* consensus_856#0 CTAGACTGGGTAAACACTGAGTTTGGCTTCA-AGCCTGTTGTATACACAAGCTTTTTTGG 659 consensus_856#1 CTAGACTGGGTAAACACTGANTTTGGCTTCGGNGCCTGTNGTATACACAAGCTTTTTTGG 134 ******************** ********* ****** ******************** consensus_856#0 TGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTAGAAACTGTTTTGAAGAATACCACCGA 719 consensus_856#1 TGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTANAAACTGTTTTGAANAATACCACCGA 194 ********************************** ************* *********** consensus_856#0 CTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCATTCCCTGGTAATCCCTCT 779 consensus_856#1 CTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCANTCCCTGGTAATCCCTCT 254 ****************************************** ***************** consensus_856#0 CGCAATATTCAGAGGGAAGCTGGGAATTGAGCAGGCAATTGAATTGATCAGACTTGAAGA 839 consensus_856#1 CNCNATATTCNNANGGAAGCTGGGAATTGAACNNGCA-TTGA--TGATCNGACT----GA 307 * * ****** * **************** * *** **** ***** **** ** consensus_856#0 AGATCACCAGGTTGATAGATGGGGCTTGGTTGAAGGAGGTCATGATGTTGATATTGCCGA 899 consensus_856#1 AAATC-CCACGT-GATANATGG-------CTGTGAGAGTC--TGATGT--ATAT-GCCGA 353 * *** *** ** **** **** ** *** ****** **** ***** consensus_856#0 TCTCAAAGTGCAAATGTCATCAGCTGTTGTGTTTCTTTTACTTTCATGGCAACTATAGTT 959 consensus_856#1 TCTCAA-GTGCAA-TGTC-TCAGCTGTTGTGTTC--TTTACTTCA--------------- 393 ****** ****** **** ************** ******* consensus_856#0 ACTTATGTAGCGAATCTACGGATCGGTTGGTTTTTTTTTGTTTGATCTCGACTTTCGAGC 1019 consensus_856#1 ------------------------------------------------------------ consensus_856#0 TTGTATCAACTTTTGTGACGACTGGTAGAATAAGACTTCCCTGCAGATGGTTAATAGGGA 1079 consensus_856#1 ------------------------------------------------------------ consensus_856#0 GACAGAGCTCCAGAATTTAATCTGTTGGATTCTGGTGTCTCAAACAGTATGTTTGTTAAG 1139 consensus_856#1 ------------------------------------------------------------ consensus_856#0 ATATAAAAACTCAACCTGTGGAATACTTATCATT 1173 consensus_856#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||