These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [TCTATTTGAAAAATCAGTATAATATCGTATTTGAGAGAAAATTAAAATGGCCGCACGTGGTTCAGCTCGTAACTCACGATTGAATAAGAAACCAAAGAAAAATAAATTACGTGGTAATGTCTCACACGGTCATGGTCGTATCGGTAAACACCGTAAACATCCCGGTGGTCGTGGTAATGCTGGTGGTCTTCATCATCACCGAACATTATTCGATAAATATCACCCGGGCTACTTCGGTAAAGTTGGTCAACGTGAATTTCACAAATTGAAAAATCGTCGTTGGTGTCCATCAGTCAATCTTGATCGTTTGTGGTCACTTTTAACTCAACGTACACAAGAAAAATATACAGCAGAAGAACAAAAAGTCGTTCCTGTTATCAATGTTGTTCGTTCGGGTTACTTCAAAGTTTTAGGCAAAGGTGTTTTGCCAAAACAACCATTGATTGTCAAGGCAAAATTCTTCTCTCGACGTGCCGAAAGAAAAATCANAGCAGCTGGTGGTGCTTGCATATTACTTGCCTAAACAACAACATCTCGAAATCCATCATTTAACACAACCGATGACAAAAGGATCGAAATAATCATATTCGTTGACGTT] [+] EMBL CA758844 [TCTATTTGAAAAATCAGTATAATATCGTATTTGAGAGAAAATTAAAATGGCCGCACGTGGTTCAGCTCGTAACTCACGATTGAATAAGAAACCAAAGAAAAATAAATTACGTGGTAATGTCTCACACGGTCATGGTCGTATCGGTAAACACCGTAAACATCCCGGTGGTCGTGGTAATGCTGGTGGTCTTCATCATCACCGAACATTATTCGATAAATATCACCCGGGCTACTTCGGTAAAGTTGGTCAACGTGAATTTCACAAATTGAAAAATCGTCGTTGGTGTCCATCAGTCAATCTTGATCGTTTGTGGTCACTTTTAACTCAACGTACACAAGAAAAATATACAGCAGAAGAACAAAAAGTCGTTCCTGTTATCAATGTTGTTCGTTCGGGTTACTTCAAAGTTTTAGGCAAAGGTGTTTTGCCAAAACAACCATTGATTGTCAAGGCAAAATTCTTCTCTCGACGTGCCGAAAGAAAAATCANAGCAGCTGGTGGTGCTTGCATATTACTTGCCTAAACAACAACATCTCGAAATCCATCATTTAACACAACCGATGACAAAAGGATCGAAATAATCATATTCGTTGACGTT] consensusID : consensus_857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [ATCTAATTACGAACAGAAACTTATAAAAAAATGGCCGCACGTGGTTCAGCACGAAATTCTCGATTGAATAAGAAACCCAAGAAAACCAAATTACGTGGTAATGTCTCACATGGTCACGGTCGTGTTGGTAAACATCGTAAACATCCTGGTGGTCGTGGTAACGCTGGTGGTCTTCATCATCACCGTACTCTTTTCGACAAATATCACCCGGGTTACTTCGGTAAAGTTGGTCAACGTGAATTCCATAAATTGAAAAATCGCCGCTGGTGTCCATCTGTCAACCTCGATCGTTTATGGTCACTTTTGAGTCAACGAACACCAGCAAAATATTCCGAAGGAGAAGCTGCCGTCACACCTGTCATCAATGTTGTCCGATCAGGTTACCTCAAGGTGTTAGGCAAAGGTGTTCTACCAAACAACCACTCATTGTTAAGGCCAAATTCTTCTCGAGATCAGCTGAAGAAAAATCAAAGCTGCTGGTGGGTGCCTGTGTATTAGTAGCATGAGACATTCGTTACCATCACTTCTGTCTTTTGCTACCCAAAAGAAAAAATATGTTCACTATCACATTGGTTTTCTTTCCGTTGAGATCG] [+] EMBL CA758950 [ATCTAATTACGAACAGAAACTTATAAAAAAATGGCCGCACGTGGTTCAGCACGAAATTCTCGATTGAATAAGAAACCCAAGAAAACCAAATTACGTGGTAATGTCTCACATGGTCACGGTCGTGTTGGTAAACATCGTAAACATCCTGGTGGTCGTGGTAACGCTGGTGGTCTTCATCATCACCGTACTCTTTTCGACAAATATCACCCGGGTTACTTCGGTAAAGTTGGTCAACGTGAATTCCATAAATTGAAAAATCGCCGCTGGTGTCCATCTGTCAACCTCGATCGTTTATGGTCACTTTTGAGTCAACGAACACCAGCAAAATATTCCGAAGGAGAAGCTGCCGTCACACCTGTCATCAATGTTGTCCGATCAGGTTACCTCAAGGTGTTAGGCAAAGGTGTTCTACCAAACAACCACTCATTGTTAAGGCCAAATTCTTCTCGAGATCAGCTGAAGAAAAATCAAAGCTGCTGGTGGGTGCCTGTGTATTAGTAGCATGAGACATTCGTTACCATCACTTCTGTCTTTTGCTACCCAAAAGAAAAAATATGTTCACTATCACATTGGTTTTCTTTCCGTTGAGATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_857#0 TCTATTTGAAAAATCAGTATAATATCGTATTTGAGAGAAAATTAAAATGGCCGCACGTGG 60 consensus_857#1 ----------------ATCTAATTACGAACAGAAACTTATAAAAAAATGGCCGCACGTGG 44 * **** ** * * * * ***************** consensus_857#0 TTCAGCTCGTAACTCACGATTGAATAAGAAACCAAAGAAAAATAAATTACGTGGTAATGT 120 consensus_857#1 TTCAGCACGAAATTCTCGATTGAATAAGAAACCCAAGAAAACCAAATTACGTGGTAATGT 104 ****** ** ** ** ***************** ******* ***************** consensus_857#0 CTCACACGGTCATGGTCGTATCGGTAAACACCGTAAACATCCCGGTGGTCGTGGTAATGC 180 consensus_857#1 CTCACATGGTCACGGTCGTGTTGGTAAACATCGTAAACATCCTGGTGGTCGTGGTAACGC 164 ****** ***** ****** * ******** *********** ************** ** consensus_857#0 TGGTGGTCTTCATCATCACCGAACATTATTCGATAAATATCACCCGGGCTACTTCGGTAA 240 consensus_857#1 TGGTGGTCTTCATCATCACCGTACTCTTTTCGACAAATATCACCCGGGTTACTTCGGTAA 224 ********************* ** * ***** ************** *********** consensus_857#0 AGTTGGTCAACGTGAATTTCACAAATTGAAAAATCGTCGTTGGTGTCCATCAGTCAATCT 300 consensus_857#1 AGTTGGTCAACGTGAATTCCATAAATTGAAAAATCGCCGCTGGTGTCCATCTGTCAACCT 284 ****************** ** ************** ** *********** ***** ** consensus_857#0 TGATCGTTTGTGGTCACTTTTAACTCAACGTACACAAGAAAAATATACAGCAGAAGAACA 360 consensus_857#1 CGATCGTTTATGGTCACTTTTGAGTCAACGAACACCAGCAAAATATTCCGAAGGAGAAGC 344 ******** *********** * ****** **** ** ******* * * ** **** consensus_857#0 AAAAGTCGTTCCTGTTATCAATGTTGTTCGTTCGGGTTACTTCAAAGTTTTAGGCAAAGG 420 consensus_857#1 TGCCGTCACACCTGTCATCAATGTTGTCCGATCAGGTTACCTCAAGGTGTTAGGCAAAGG 404 *** ***** *********** ** ** ****** **** ** *********** consensus_857#0 TGTTTTGCCAAAACAACCATTGATTGTCAAGGCAAAATTCTTCTCTCGACGTGCCGAAAG 480 consensus_857#1 TGTTCTACCAAA-CAACCACTCATTGTTAAGGCCAAATTCTTCTCGAGATCAGCTGAA-G 462 **** * ***** ****** * ***** ***** *********** ** ** *** * consensus_857#0 AAAAATCANAGCAGCTGGTGG-TGCTTGCATATTACTTGCCTAAACAA--CAACATCTCG 537 consensus_857#1 AAAAATCAAAGCTGCTGGTGGGTGCCTGTGTATTAGTAGCATGAGACATTCGTTACCATC 522 ******** *** ******** *** ** ***** * ** * * * * * * consensus_857#0 AAATCCATCATTTAACACAACCGATGACAAAAGGATCGAAATAATCATATTCGTTGACGT 597 consensus_857#1 ACTTCTGTCTTTTGCTAC--CCAAAAGAAAAAATATGTTCACTATCACATTGGTTTTCTT 580 * ** ** *** ** ** * **** ** * **** *** *** * * consensus_857#0 T------------ 598 consensus_857#1 TCCGTTGAGATCG 593 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||