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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1325 fasta sequence
[TCACTAAATGCTGGGGATCGGATATGAGAGCAACCATGGATTAAGATCCTAGGCTAACCGAACGTGCCGGAGGTATATTTACCATGCTACCCCTAAAGGGAATGCCCGTAGTGCAGCGATTTCCTGATGTGTTCCCAGAAGATTTACCTGGAATGCCACCAGATCGTGACATAGAGTTCATTATTGACCTGATACCCGGAACTGCCCCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTAGAAGAACTTAAAAAGCAAATTAGGGAGTTGCAAGAAAAGGGATTTGTACGCCCCAGTTCGTCACCTTGGGGAGCCCCAGTGCTATTCGTCAAGAAGAAAGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTGAACGAAGTAACTATCAAAAACAAGTATCCACTACCACGGATTGATGATCTCTTCGATCAACTTAAGGGAGCTAAGGTGTTTTCAAAGATTGACCTTCGGTCAGGATGCCACCAATTGAAAATTAGAACCGGGGACATACCCAAAACCGCGTTCTCAACACGCTATGGGTCATATGAGTTCACCGTAATGTCGTTTGGTTTAACCAACGCTCCGGCATACTTTATGAATCTTATGAACAAAGTGTTCATGGACTACTTGGACAAATTTGTGGTGGTATTCATCGATGATATTTTAATCTACTCCAAAGATGAGGAAGAACATGCGGAACACTTGCGATTGGTACTCGAGAAACTTCGGAAGCATAAGTTATATGCAAAATTCAGCAAGTGTGAGTTCTGGTTAAAAGAAGTCGCTTTTCTAGGCCACGTAATCTCGGCCGGTGGAGTAGCAGTGGATCCTGCTAAAGTGGAGGCTGTCACGGAATGGAAAGCACCCAAATCTGTGACTGAAATTCGGAGTTTTCTAGGCTTGGCTAGATACTACCGAAGGTTCATTGAAGGGTTCTCTAAGATAGCCCGACCAATGACACAACTACTCAAGAAGGAAAAGAAGTTTGTGTGGTCAGAGCAGTGTCAGGAAAGCTTTGAGCAGCTCAAAGAAAAGCTGACCTCGGCGCCTATTTTAGTTCTTCCCGACATCAGGAAAGACTTTGTTATATATTGTGATGCTTCAAGGCAAGGACTAGGAGGAGTACTGATGCAGGACGGAAAAGTTGTGGCCTATGCGTCGCGACAATTGCGACCACATGAGGAGAACTACCCTACCCATGACCTAGAACTCGCAGCTGTGGTTCATGCGCTAAAGATTTGGAGACATTATCTGATTGGAAACCATTGCGATATCTACACTGACCACAAGAGTCTGAAGTATATCTTCACC]
[+] EMBL AB021952 [TCACTAAATGCTGGGGATCGGATATGAGAGCAACCATGGATTAAGATCCTAGGCTAACCGAACGTGCCGGAGGTATATTTACCATGCTACCCCTAAAGGGAATGCCCGTAGTGCAGCGATTTCCTGATGTGTTCCCAGAAGATTTACCTGGAATGCCACCAGATCGTGACATAGAGTTCATTATTGACCTGATACCCGGAACTGCCCCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTAGAAGAACTTAAAAAGCAAATTAGGGAGTTGCAAGAAAAGGGATTTGTACGCCCCAGTTCGTCACCTTGGGGAGCCCCAGTGCTATTCGTCAAGAAGAAAGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTGAACGAAGTAACTATCAAAAACAAGTATCCACTACCACGGATTGATGATCTCTTCGATCAACTTAAGGGAGCTAAGGTGTTTTCAAAGATTGACCTTCGGTCAGGATGCCACCAATTGAAAATTAGAACCGGGGACATACCCAAAACCGCGTTCTCAACACGCTATGGGTCATATGAGTTCACCGTAATGTCGTTTGGTTTAACCAACGCTCCGGCATACTTTATGAATCTTATGAACAAAGTGTTCATGGACTACTTGGACAAATTTGTGGTGGTATTCATCGATGATATTTTAATCTACTCCAAAGATGAGGAAGAACATGCGGAACACTTGCGATTGGTACTCGAGAAACTTCGGAAGCATAAGTTATATGCAAAATTCAGCAAGTGTGAGTTCTGGTTAAAAGAAGTCGCTTTTCTAGGCCACGTAATCTCGGCCGGTGGAGTAGCAGTGGATCCTGCTAAAGTGGAGGCTGTCACGGAATGGAAAGCACCCAAATCTGTGACTGAAATTCGGAGTTTTCTAGGCTTGGCTAGATACTACCGAAGGTTCATTGAAGGGTTCTCTAAGATAGCCCGACCAATGACACAACTACTCAAGAAGGAAAAGAAGTTTGTGTGGTCAGAGCAGTGTCAGGAAAGCTTTGAGCAGCTCAAAGAAAAGCTGACCTCGGCGCCTATTTTAGTTCTTCCCGACATCAGGAAAGACTTTGTTATATATTGTGATGCTTCAAGGCAAGGACTAGGAGGAGTACTGATGCAGGACGGAAAAGTTGTGGCCTATGCGTCGCGACAATTGCGACCACATGAGGAGAACTACCCTACCCATGACCTAGAACTCGCAGCTGTGGTTCATGCGCTAAAGATTTGGAGACATTATCTGATTGGAAACCATTGCGATATCTACACTGACCACAAGAGTCTGAAGTATATCTTCACC]
consensusID : consensus_858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1155 fasta sequence
[AACGTTATTATTGATGATTCTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTCCTGGACGAGGGTTTTATGCACAAATTAGTTTGGAAATTACTAGTGAATTTCTGGGCGTGACAACCAGGGCGTATTGATGGGTATGTTTTCTATCAACTCCACTCCAGTTAAAGTTCTCTTCGATTCAGGAGCATCGTATTCATTTATATCTTTGAAAGCAAGCCAACAACACAATTTGACCAGAGTTAAACTAAGGCAACCAATGTTAGTACATTCACCTGGGGGTGAAATAGCCGTGGATACAGCTTGCATTGACGTACCCATTCGCCTTAGGGATGTGGTATTTCCCTCCAACCTTATGGTGCTGATGCCTCAGACCCTTGATGTCATATTGGGTATGGATTGGTTAACAAAGAATAGAGGAGTAATCGACTGTAGACGTAGAGAAGTTACCCTGACCACACCCTGGGGATCGGATATGAGAGCAACCATGGATCAAGATCCTAGACTAACTGAACGTGCCGGAGGCATATTTACCATGCTACCCCTGAAAGGAATGCCCGTAGTGTAGCGATTCCCCGATGTGTTCCCAGAAGATTTACCTGGAATGCCACTAGATCGTGACATAGAGTTCACTATTGACCTGATACCCGGGACTACCCCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTCGAGGAACTTAAAAAGCAAATCAGAGAGTTGCAAGAGAAGGGATTTGTACGTCCTAGTTCGTCACCTTGGGGCGCCCCAGTGTTATTCGTCAAGAAGAAGGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTGAACGAAGTCACTATCAAAAACAAGTATCCATTACCACGAATTGATGATCTTTTTGATCAACTCAAAGGAGCTAAGGTGTTCTCTAAGATTGACCTTCGATCAGGATACCACCAATTGAAAATTAGGATCGGGGATATACCCAAGACCGCGTTCTCAACGCGCTATGGATTGTATGAGTTCACAGTAATGTCGTTTGGATTAACCAACGCCCCGGCATACTTTATGAATCTTATGAACAAAGTGTTCATGGATTACTTGGGCAAATTTGTGGTAGTATTCATCGATGATATCTTAATCTACTCCAAAGACGAGGAA]
[-] EMBL AK062744 [AACGTTATTATTGATGATTCTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTCCTGGACGAGGGTTTTATGCACAAATTAGTTTGGAAATTACTAGTGAATTTCTGGGCGTGACAACCAGGGCGTATTGATGGGTATGTTTTCTATCAACTCCACTCCAGTTAAAGTTCTCTTCGATTCAGGAGCATCGTATTCATTTATATCTTTGAAAGCAAGCCAACAACACAATTTGACCAGAGTTAAACTAAGGCAACCAATGTTAGTACATTCACCTGGGGGTGAAATAGCCGTGGATACAGCTTGCATTGACGTACCCATTCGCCTTAGGGATGTGGTATTTCCCTCCAACCTTATGGTGCTGATGCCTCAGACCCTTGATGTCATATTGGGTATGGATTGGTTAACAAAGAATAGAGGAGTAATCGACTGTAGACGTAGAGAAGTTACCCTGACCACACCCTGGGGATCGGATATGAGAGCAACCATGGATCAAGATCCTAGACTAACTGAACGTGCCGGAGGCATATTTACCATGCTACCCCTGAAAGGAATGCCCGTAGTGTAGCGATTCCCCGATGTGTTCCCAGAAGATTTACCTGGAATGCCACTAGATCGTGACATAGAGTTCACTATTGACCTGATACCCGGGACTACCCCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTCGAGGAACTTAAAAAGCAAATCAGAGAGTTGCAAGAGAAGGGATTTGTACGTCCTAGTTCGTCACCTTGGGGCGCCCCAGTGTTATTCGTCAAGAAGAAGGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTGAACGAAGTCACTATCAAAAACAAGTATCCATTACCACGAATTGATGATCTTTTTGATCAACTCAAAGGAGCTAAGGTGTTCTCTAAGATTGACCTTCGATCAGGATACCACCAATTGAAAATTAGGATCGGGGATATACCCAAGACCGCGTTCTCAACGCGCTATGGATTGTATGAGTTCACAGTAATGTCGTTTGGATTAACCAACGCCCCGGCATACTTTATGAATCTTATGAACAAAGTGTTCATGGATTACTTGGGCAAATTTGTGGTAGTATTCATCGATGATATCTTAATCTACTCCAAAGACGAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_858#0 ------------------------------------------------------------
consensus_858#1 AACGTTATTATTGATGATTCTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTCC 60
consensus_858#0 ------------------------------------------------------------
consensus_858#1 TGGACGAGGGTTTTATGCACAAATTAGTTTGGAAATTACTAGTGAATTTCTGGGCGTGAC 120
consensus_858#0 ------------------------------------------------------------
consensus_858#1 AACCAGGGCGTATTGATGGGTATGTTTTCTATCAACTCCACTCCAGTTAAAGTTCTCTTC 180
consensus_858#0 ------------------------------------------------------------
consensus_858#1 GATTCAGGAGCATCGTATTCATTTATATCTTTGAAAGCAAGCCAACAACACAATTTGACC 240
consensus_858#0 ------------------------------------------------------------
consensus_858#1 AGAGTTAAACTAAGGCAACCAATGTTAGTACATTCACCTGGGGGTGAAATAGCCGTGGAT 300
consensus_858#0 ------------------------------------------------------------
consensus_858#1 ACAGCTTGCATTGACGTACCCATTCGCCTTAGGGATGTGGTATTTCCCTCCAACCTTATG 360
consensus_858#0 ------------------------------------------------------------
consensus_858#1 GTGCTGATGCCTCAGACCCTTGATGTCATATTGGGTATGGATTGGTTAACAAAGAATAGA 420
consensus_858#0 ----------------------------------TCACTAAATGCTGGGGATCGGATATG 26
consensus_858#1 GGAGTAATCGACTGTAGACGTAGAGAAGTTACCCTGACCACACCCTGGGGATCGGATATG 480
* ** * * ****************
consensus_858#0 AGAGCAACCATGGATTAAGATCCTAGGCTAACCGAACGTGCCGGAGGTATATTTACCATG 86
consensus_858#1 AGAGCAACCATGGATCAAGATCCTAGACTAACTGAACGTGCCGGAGGCATATTTACCATG 540
*************** ********** ***** ************** ************
consensus_858#0 CTACCCCTAAAGGGAATGCCCGTAGTGCAGCGATTTCCTGATGTGTTCCCAGAAGATTTA 146
consensus_858#1 CTACCCCTGAAAGGAATGCCCGTAGTGTAGCGATTCCCCGATGTGTTCCCAGAAGATTTA 600
******** ** *************** ******* ** *********************
consensus_858#0 CCTGGAATGCCACCAGATCGTGACATAGAGTTCATTATTGACCTGATACCCGGAACTGCC 206
consensus_858#1 CCTGGAATGCCACTAGATCGTGACATAGAGTTCACTATTGACCTGATACCCGGGACTACC 660
************* ******************** ****************** *** **
consensus_858#0 CCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTAGAAGAACTTAAAAAGCAA 266
consensus_858#1 CCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTCGAGGAACTTAAAAAGCAA 720
***************************************** ** ***************
consensus_858#0 ATTAGGGAGTTGCAAGAAAAGGGATTTGTACGCCCCAGTTCGTCACCTTGGGGAGCCCCA 326
consensus_858#1 ATCAGAGAGTTGCAAGAGAAGGGATTTGTACGTCCTAGTTCGTCACCTTGGGGCGCCCCA 780
** ** *********** ************** ** ***************** ******
consensus_858#0 GTGCTATTCGTCAAGAAGAAAGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTG 386
consensus_858#1 GTGTTATTCGTCAAGAAGAAGGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTG 840
*** **************** ***************************************
consensus_858#0 AACGAAGTAACTATCAAAAACAAGTATCCACTACCACGGATTGATGATCTCTTCGATCAA 446
consensus_858#1 AACGAAGTCACTATCAAAAACAAGTATCCATTACCACGAATTGATGATCTTTTTGATCAA 900
******** ********************* ******* *********** ** ******
consensus_858#0 CTTAAGGGAGCTAAGGTGTTTTCAAAGATTGACCTTCGGTCAGGATGCCACCAATTGAAA 506
consensus_858#1 CTCAAAGGAGCTAAGGTGTTCTCTAAGATTGACCTTCGATCAGGATACCACCAATTGAAA 960
** ** ************** ** ************** ******* *************
consensus_858#0 ATTAGAACCGGGGACATACCCAAAACCGCGTTCTCAACACGCTATGGGTCATATGAGTTC 566
consensus_858#1 ATTAGGATCGGGGATATACCCAAGACCGCGTTCTCAACGCGCTATGGATTGTATGAGTTC 1020
***** * ****** ******** ************** ******** * *********
consensus_858#0 ACCGTAATGTCGTTTGGTTTAACCAACGCTCCGGCATACTTTATGAATCTTATGAACAAA 626
consensus_858#1 ACAGTAATGTCGTTTGGATTAACCAACGCCCCGGCATACTTTATGAATCTTATGAACAAA 1080
** ************** *********** ******************************
consensus_858#0 GTGTTCATGGACTACTTGGACAAATTTGTGGTGGTATTCATCGATGATATTTTAATCTAC 686
consensus_858#1 GTGTTCATGGATTACTTGGGCAAATTTGTGGTAGTATTCATCGATGATATCTTAATCTAC 1140
*********** ******* ************ ***************** *********
consensus_858#0 TCCAAAGATGAGGAAGAACATGCGGAACACTTGCGATTGGTACTCGAGAAACTTCGGAAG 746
consensus_858#1 TCCAAAGACGAGGAA--------------------------------------------- 1155
******** ******
consensus_858#0 CATAAGTTATATGCAAAATTCAGCAAGTGTGAGTTCTGGTTAAAAGAAGTCGCTTTTCTA 806
consensus_858#1 ------------------------------------------------------------
consensus_858#0 GGCCACGTAATCTCGGCCGGTGGAGTAGCAGTGGATCCTGCTAAAGTGGAGGCTGTCACG 866
consensus_858#1 ------------------------------------------------------------
consensus_858#0 GAATGGAAAGCACCCAAATCTGTGACTGAAATTCGGAGTTTTCTAGGCTTGGCTAGATAC 926
consensus_858#1 ------------------------------------------------------------
consensus_858#0 TACCGAAGGTTCATTGAAGGGTTCTCTAAGATAGCCCGACCAATGACACAACTACTCAAG 986
consensus_858#1 ------------------------------------------------------------
consensus_858#0 AAGGAAAAGAAGTTTGTGTGGTCAGAGCAGTGTCAGGAAAGCTTTGAGCAGCTCAAAGAA 1046
consensus_858#1 ------------------------------------------------------------
consensus_858#0 AAGCTGACCTCGGCGCCTATTTTAGTTCTTCCCGACATCAGGAAAGACTTTGTTATATAT 1106
consensus_858#1 ------------------------------------------------------------
consensus_858#0 TGTGATGCTTCAAGGCAAGGACTAGGAGGAGTACTGATGCAGGACGGAAAAGTTGTGGCC 1166
consensus_858#1 ------------------------------------------------------------
consensus_858#0 TATGCGTCGCGACAATTGCGACCACATGAGGAGAACTACCCTACCCATGACCTAGAACTC 1226
consensus_858#1 ------------------------------------------------------------
consensus_858#0 GCAGCTGTGGTTCATGCGCTAAAGATTTGGAGACATTATCTGATTGGAAACCATTGCGAT 1286
consensus_858#1 ------------------------------------------------------------
consensus_858#0 ATCTACACTGACCACAAGAGTCTGAAGTATATCTTCACC 1325
consensus_858#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||