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Oryza sativa
cluster # 8592 cluster # 8592       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8592#0 length = 2599 sequences # 3  
consensus_8592#1 length = 757 sequences # 1  
consensus_8592#2 length = 751 sequences # 1  

consensusID : consensus_8592#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2599
fasta sequence
                              [GAGAAGGAGAAATGTTGATTTCTTGAGAGTTGAGACGAGGAAGAAGAGCAAGCGGATAAACCACCTGTGCTAAAACCCTCATCGCCGCGCCGCCGCCTCCGCCTCTGCTCCGCCGCTCCCAACCCTGCGCGGCGGGCGGCGGTGAGCCGGTCTGCTCTTCCCTCTACCGGCCGCCCACGCTGCTCCTCACGGCGCTCTCGATTCCTGGTTCCTCTCCCCGTGGGCCTCCATGTCTTTGACCACCGTTTCTTTCTCATACCCCGCCAAGCCGCTTCCCAAATGGCCGTGCACGCTGCCTAAGCCGCCGCCGAGGGCTCGCTGCCGTTTTGTGGTGCGGGCGGACGTCAAGGTGATCTCTTCCGGTGAGGCCTGCCGCCGTGGGCTCGCCGCCGGCATCGACAAGCTCGCCGACGCCGTCGCGGTCACTCTAGGCCCCAAAGGCAGGAATGTTGTTATTGACCAAGACGATGTTCCTAAAGTAATCAATGATGGTATCACAATTGCCAAGGCTATAGAGCTCCCAAATGCTGTTGAGCACGCAGGTGCCATGTTACTTCAAGAGATAGCATCCAAGACGAATAGTTCTGTTGGCGATGGAACAACAACTGCTATTATTTTGGCAAGAGAAATTATCAATCTTGGGTTGTTGGCAGTAGCCACTGGTGCTAACCCAGTTGCCCTGAGAAAGGGTATTGACAAAGCTGTTCATGAACTTATTGGGATCTTGAAGACTAAATGTATCCCTGTAAGTACAAAGGAGGACATAAAAGGTAATTTTGTCACCTGGGAAGCATACATCACGAGCACAGAAATACGGAATAATAAACCATACCCACTAGACTAGTAACCTTTCCTTTTTATTTTAGAAAGCATATAGTCGATATAGCATGAAGCATATCATGATTTGTCTGTGAATGCACCGAAATTATTCTGTGGTCAGATTATAAAATGTTGTAAATCTCTAAATTTCATTTTCAGCTGTTGCTTCAATATCAGCTGGCAATGATGAATATGTTGGCGATCTCATTGCTGATGCATTGGAGAAGATAGGTCCTGATGGAATAATTAAAATTGAGTCCTCATCTTCAATATATACTTCAGTTGAGGTGCAAGAAGGAATGAAGATAGACAAAGGTTATATCTCTCCACATTTCATCACAAATCAAGACAAAGCAATTGTTGAATTTGAAAATGCTAGGGTACTTTTAACTGATCAGCGGGTGGATGATGTCCAAGAGATACTTCCTTTGCTAGAGAAGACCACACAGTTGAGTGTCCCTTTGTTGATTATTGCGGAGGATGTTTCACATACGGTGTATTCAACTCTTGTTCTTAACAAACTGAATGGACTGCTAAATGTTGCTGTTGTTAAATGTCCTGGTTTGGGAGATGAAAAGAAGGCTATTCTCCAAGATATTGCTATTATGACAGGTGCAGATTTCTTTGCTAGTGACCTTGGCTGGTGTCTTCAAGGTGCTACTTCTGATCAGCTAGGTATGGCTCAGAAGATCACTATAACAAGTGATACTACTACTATCATTGCACATCCTTCGATGAGACCAGAAATTGAGGCCAGAATTCAGCAACTTAAGAAAGATCTAGAGGAGACAACAAGTGCCTATCTAAAAGAAAGGTTTTCATCTCGTATCGCTAAACTCTCAAGAGGTATTGCAGTTATCAAGGTTGGTGCAGCTACTGAAGCTGAACTCGAGGATAGGAAACTGAGAGCGGAGGATGCAAAAAATGCAACCTTTGCAGCCATTAGCGAAGGCATAACTCCTGGAGGTGGTGTGACGTATGTTCAATTATCAAAGTATATTCCCAGTATCATGGATCTTGTAGATGACTCTGAAGAGAAGATTGGTGTAAATATAGTTGGGAAGGCACTTCTCGTCCCTGCTATGACGATAGCTCGCAATGCTGGGGCAGATGGTCCAGCTGTTGTAGAGAAGCTTCTTGCGAGTGAATGGCGAGTTGGATACAATGCAATGACTGACAAATTTGAAGACCTTGTTGATGCTGGTGTGGTAGACCCATGCAGGGTTGCAAGATGTGTGCTTCAAAACTCTGCCTCTATTGCAGGACTTATTTTAATGACGCAAGCTATGATGTTCGACAAAATAAAGAAGAAAAAGTCCACCATTCCTCAAATTCCTGGCATCCCACCATTGCAGATAAATCAAAATGCTTAGATTTGAACTAGTAACTTACTGTCATTGAAGAAAGGTCCATGATGCAAGGCCTTTGTTTGATCGGTTAGATGAGTTGAACCAAGAATTGGAAGTGGAGCCTCTGAGCAGATCATCAGCTGGAGCCACTGGGTACGATAACGGAGGAAAAGATCTACTTCTATGGTTCAGATATCAGTAACTTAAAACTAACTGTATACTAGTCAGCAAAATGTCTCCATATCCCTCTTCTCTCTTTTCCCTTGGAGGTGCAAGGAGCATTTTTTTTCCTTCACAATTTTGTAACGTAGAAGATAGGATTACTAATCCATTGCAGATCCCAAAATGTTGAACGTGCTAGTTTTATTGTACTTTTATATCTTCATGAATGTGCATGATGATTTGCTTGATACTACTTTAAAAAAAAAAGA]

[+] EMBL AK068277             [GAGAAGGAGAAATGTTGATTTCTTGAGAGTTGAGACGAGGAAGAAGAGCAAGCGGATAAACCACCTGTGCTAAAACCCTCATCGCCGCGCCGCCGCCTCCGCCTCTGCTCCGCCGCTCCCAACCCTGCGCGGCGGGCGGCGGTGAGCCGGTCTGCTCTTCCCTCTACCGGCCGCCCACGCTGCTCCTCACGGCGCTCTCGATTCCTGGTTCCTCTCCCCGTGGGCCTCCATGTCTTTGACCACCGTTTCTTTCTCATACCCCGCCAAGCCGCTTCCCAAATGGCCGTGCACGCTGCCTAAGCCGCCGCCGAGGGCTCGCTGCCGTTTTGTGGTGCGGGCGGACGTCAAGGTGATCTCTTCCGGTGAGGCCTGCCGCCGTGGGCTCGCCGCCGGCATCGACAAGCTCGCCGACGCCGTCGCGGTCACTCTAGGCCCCAAAGGCAGGAATGTTGTTATTGACCAAGACGATGTTCCTAAAGTAATCAATGATGGTATCACAATTGCCAAGGCTATAGAGCTCCCAAATGCTGTTGAGCACGCAGGTGCCATGTTACTTCAAGAGATAGCATCCAAGACGAATAGTTCTGTTGGCGATGGAACAACAACTGCTATTATTTTGGCAAGAGAAATTATCAATCTTGGGTTGTTGGCAGTAGCCACTGGTGCTAACCCAGTTGCCCTGAGAAAGGGTATTGACAAAGCTGTTCATGAACTTATTGGGATCTTGAAGACTAAATGTATCCCTGTAAGTACAAAGGAGGACATAAAAGGTAATTTTGTCACCTGGGAAGCATACATCACGAGCACAGAAATACGGAATAATAAACCATACCCACTAGACTAGTAACCTTTCCTTTTTATTTTAGAAAGCATATAGTCGATATAGCATGAAGCATATCATGATTTGTCTGTGAATGCACCGAAATTATTCTGTGGTCAGATTATAAAATGTTGTAAATCTCTAAATTTCATTTTCAGCTGTTGCTTCAATATCAGCTGGCAATGATGAATATGTTGGCGATCTCATTGCTGATGCATTGGAGAAGATAGGTCCTGATGGAATAATTAAAATTGAGTCCTCATCTTCAATATATACTTCAGTTGAGGTGCAAGAAGGAATGAAGATAGACAAAGGTTATATCTCTCCACATTTCATCACAAATCAAGACAAAGCAATTGTTGAATTTGAAAATGCTAGGGTACTTTTAACTGATCAGCGGGTGGATGATGTCCAAGAGATACTTCCTTTGCTAGAGAAGACCACACAGTTGAGTGTCCCTTTGTTGATTATTGCGGAGGATGTTTCACATACGGTGTATTCAACTCTTGTTCTTAACAAACTGAATGGACTGCTAAATGTTGCTGTTGTTAAATGTCCTGGTTTGGGAGATGAAAAGAAGGCTATTCTCCAAGATATTGCTATTATGACAGGTGCAGATTTCTTTGCTAGTGACCTTGGCTGGTGTCTTCAAGGTGCTACTTCTGATCAGCTAGGTATGGCTCAGAAGATCACTATAACAAGTGATACTACTACTATCATTGCACATCCTTCGATGAGACCAGAAATTGAGGCCAGAATTCAGCAACTTAAGAAAGATCTAGAGGAGACAACAAGTGCCTATCTAAAAGAAAGGTTTTCATCTCGTATCGCTAAACTCTCAAGAGGTATTGCAGTTATCAAGGTTGGTGCAGCTACTGAAGCTGAACTCGAGGATAGGAAACTGAGAGCGGAGGATGCAAAAAATGCAACCTTTGCAGCCATTAGCGAAGGCATAACTCCTGGAGGTGGTGTGACGTATGTTCAATTATCAAAGTATATTCCCAGTATCATGGATCTTGTAGATGACTCTGAAGAGAAGATTGGTGTAAATATAGTTGGGAAGGCACTTCTCGTCCCTGCTATGACGATAGCTCGCAATGCTGGGGCAGATGGTCCAGCTGTTGTAGAGAAGCTTCTTGCGAGTGAATGGCGAGTTGGATACAATGCAATGACTGACAAATTTGAAGACCTTGTTGATGCTGGTGTGGTAGACCCATGCAGGGTTGCAAGATGTGTGCTTCAAAACTCTGCCTCTATTGCAGGACTTATTTTAATGACGCAAGCTATGATGTTCGACAAAATAAAGAAGAAAAAGTCCACCATTCCTCAAATTCCTGGCATCCCACCATTGCAGATAAATCAAAATGCTTAGATTTGAACTAGTAACTTACTGTCATTGAAGAAAGGTCCATGATGCAAGGCCTTTGTTTGATCGGTTAGATGAGTTGAACCAAGAATTGGAAGTGGAGCCTCTGAGCAGATCATCAGCTGGAGCCACTGGGTACGATAACGGAGGAAAAGATCTACTTCTATGGTTCAGATATCAGTAACTTAAAACTAACTGTATACTAGTCAGCAAAATGTCTCCATATCCCTCTTCTCTCTTTTCCCTTGGAGGTGCAAGGAGCATTTTTTTTCCTTCACAATTTTGTAACGTAGAAGATAGGATTACTAGTCCATTGCAGATCCCAAAATGTTGAACGTGCTAGTTTTATTGTACTT                                                         ]
[+] EMBL AK060773             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTGAATGGACTGCTAAATGTTGCTGTTGTTAAATGTCCTGGTTTGGGAGATGAAAAGAAGGCTATTCTCCAAGATATTGCTATTATGACAGGTGCAGATTTCTTTGCTAGTGACCTTGGCTGGTGTCTTCAAGGTGCTACTTCTGATCAGCTAGGTATGGCTCAGAAGATCACTATAACAAGTGATACTACTACTATCATTGCACATCCTTCGATGAGACCAGAAATTGAGGCCAGAATTCAGCAACTTAAGAAAGATCTAGAGGAGACAACAAGTGCCTATCTAAAAGAAAGGTTTTCATCTCGTATCGCTAAACTCTCAAGAGGTATTGCAGTTATCAAGGTTGGTGCAGCTACTGAAGCTGAACTCGAGGATAGGAAACTGAGAGCGGAGGATGCAAAAAATGCAACCTTTGCAGCCATTAGCGAAGGCATAACTCCTGGAGGTGGTGTGACGTATGTTCAATTATCAAAGTATATTCCCAGTATCATGGATCTTGTAGATGACTCTGAAGAGAAGATTGGTGTAAATATAGTTGGGAAGGCACTTCTCGTCCCTGCTATGACGATAGCTCGCAATGCTGGGGCAGATGGTCCAGCTGTTGTAGAGAAGCTTCTTGCGAGTGAATGGCGAGTTGGATACAATGCAATGACTGACAAATTTGAAGACCTTGTTGATGCTGGTGTGGTAGACCCATGCAGGGTTGCAAGATGTGTGCTTCAAAACTCTGCCTCTATTGCAGGACTTATTTTAATGACGCAAGCTATGATGTTCGACAAAATAAAGAAGAAAAAGTCCACCATTCCTCAAATTCCTGGCATCCCACCATTGCAGATAAATCAAAATGCTTAGATTTGAACTAGTAACTTACTGTCATTGAAGAAAGGTCCATGATGCAAGGCCTTTGTTTGATCGGTTAGATGAGTTGAACCAAGAATTGGAAGTGGAGCCTCTGAGCAGATCATCAGCTGGAGCCACTGGGTACGATAACGGAGGAAAAGATCTACTTCTATGGTTCAGATATCAGTAACTTAAAACTAACTGTATACTAGTCAGCAAAATGTCTCCATATCCCTCTTCTCTCTTTTCCCTTGGAGGTGCAAGGAGCATTTTTTTTCCTTCACAATTTTGTAACGTAGAAGATAGGATTACTAATCCATTGCAGATCCCAAAATGTTGAACGTGCTAGTTTTATTGTACTTTTATATCTTCATGAATGTGCATGATGA                              ]
[-] EMBL CB669715             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGCAACCTTTGCAGCCATTAGCGAAGGCATAACTCCTGGAGGTGGTGTGACGTATGTTCAATTATCAAAGTATATTCCCAGTATCATGGATCTTGTAGATGACTCTGAAGAGAAGATTGGTGTAAATATAGTTGGGAAGGCACTTCTCGTCCCTGCTATGACGATAGCTCGCAATGCTGGGGCAGATGGTCCAGCTGTTGTAGAGAAGCTTCTTGCGAGTGAATGGCGAGTTGGATACAATGCAATGACTGACAAATTTGAAGACCTTGTTGATGCTGGTGTGGTAGACCCATGCAGGGTTGCAAGATGTGTGCTTCAAAACTCTGCCTCTATTGCAGGACTTATTTTAATGACGCAAGCTATGATGTTCGACAAAATAAAGAAGAAAAAGTCCACCATTCCTCAAATTCCTGGCATCCCACCATTGCAGATAAATCAAAATGCTTAGATTTGAACTAGTAACTTACTGTCATTGAAGAAAGGTCCATGATGCAAGGCCTTTGTTTGATCGGTTAGATGAGTTGAACCAAGAATTGGAAGTGGAGCCTCTGAGCAGATCATCAGCTGGAGCCACTGGGTACGATAACGGAGGAAAAGATCTACTTCTATGGTTCAGATATCAGTAACTTAAAACTAACTGTATACTAGTCAGCAAAATGTCTCCATATCCCTCTTCTCTCTTTTCCCTTGGAGGTGCAAGGAGCATTTTTTTTCCTTCACAATTTTGTAACGTAGAAGATAGGATTACTAATCCATTGCAGATCCCAAAATGTTGAACGTGCTAGTTTTATTGTACTTTTATATCTTCATGAATGTGCATGATGATTTGCTTGATACTACTTTAAAAAAAAAAGA]


>consensus_8592#0 GAGAAGGAGAAATGTTGATTTCTTGAGAGTTGAGACGAGGAAGAAGAGCAAGCGGATAAA CCACCTGTGCTAAAACCCTCATCGCCGCGCCGCCGCCTCCGCCTCTGCTCCGCCGCTCCC AACCCTGCGCGGCGGGCGGCGGTGAGCCGGTCTGCTCTTCCCTCTACCGGCCGCCCACGC TGCTCCTCACGGCGCTCTCGATTCCTGGTTCCTCTCCCCGTGGGCCTCCATGTCTTTGAC CACCGTTTCTTTCTCATACCCCGCCAAGCCGCTTCCCAAATGGCCGTGCACGCTGCCTAA GCCGCCGCCGAGGGCTCGCTGCCGTTTTGTGGTGCGGGCGGACGTCAAGGTGATCTCTTC CGGTGAGGCCTGCCGCCGTGGGCTCGCCGCCGGCATCGACAAGCTCGCCGACGCCGTCGC GGTCACTCTAGGCCCCAAAGGCAGGAATGTTGTTATTGACCAAGACGATGTTCCTAAAGT AATCAATGATGGTATCACAATTGCCAAGGCTATAGAGCTCCCAAATGCTGTTGAGCACGC AGGTGCCATGTTACTTCAAGAGATAGCATCCAAGACGAATAGTTCTGTTGGCGATGGAAC AACAACTGCTATTATTTTGGCAAGAGAAATTATCAATCTTGGGTTGTTGGCAGTAGCCAC TGGTGCTAACCCAGTTGCCCTGAGAAAGGGTATTGACAAAGCTGTTCATGAACTTATTGG GATCTTGAAGACTAAATGTATCCCTGTAAGTACAAAGGAGGACATAAAAGGTAATTTTGT CACCTGGGAAGCATACATCACGAGCACAGAAATACGGAATAATAAACCATACCCACTAGA CTAGTAACCTTTCCTTTTTATTTTAGAAAGCATATAGTCGATATAGCATGAAGCATATCA TGATTTGTCTGTGAATGCACCGAAATTATTCTGTGGTCAGATTATAAAATGTTGTAAATC TCTAAATTTCATTTTCAGCTGTTGCTTCAATATCAGCTGGCAATGATGAATATGTTGGCG ATCTCATTGCTGATGCATTGGAGAAGATAGGTCCTGATGGAATAATTAAAATTGAGTCCT CATCTTCAATATATACTTCAGTTGAGGTGCAAGAAGGAATGAAGATAGACAAAGGTTATA TCTCTCCACATTTCATCACAAATCAAGACAAAGCAATTGTTGAATTTGAAAATGCTAGGG TACTTTTAACTGATCAGCGGGTGGATGATGTCCAAGAGATACTTCCTTTGCTAGAGAAGA CCACACAGTTGAGTGTCCCTTTGTTGATTATTGCGGAGGATGTTTCACATACGGTGTATT CAACTCTTGTTCTTAACAAACTGAATGGACTGCTAAATGTTGCTGTTGTTAAATGTCCTG GTTTGGGAGATGAAAAGAAGGCTATTCTCCAAGATATTGCTATTATGACAGGTGCAGATT TCTTTGCTAGTGACCTTGGCTGGTGTCTTCAAGGTGCTACTTCTGATCAGCTAGGTATGG CTCAGAAGATCACTATAACAAGTGATACTACTACTATCATTGCACATCCTTCGATGAGAC CAGAAATTGAGGCCAGAATTCAGCAACTTAAGAAAGATCTAGAGGAGACAACAAGTGCCT ATCTAAAAGAAAGGTTTTCATCTCGTATCGCTAAACTCTCAAGAGGTATTGCAGTTATCA AGGTTGGTGCAGCTACTGAAGCTGAACTCGAGGATAGGAAACTGAGAGCGGAGGATGCAA AAAATGCAACCTTTGCAGCCATTAGCGAAGGCATAACTCCTGGAGGTGGTGTGACGTATG TTCAATTATCAAAGTATATTCCCAGTATCATGGATCTTGTAGATGACTCTGAAGAGAAGA TTGGTGTAAATATAGTTGGGAAGGCACTTCTCGTCCCTGCTATGACGATAGCTCGCAATG CTGGGGCAGATGGTCCAGCTGTTGTAGAGAAGCTTCTTGCGAGTGAATGGCGAGTTGGAT ACAATGCAATGACTGACAAATTTGAAGACCTTGTTGATGCTGGTGTGGTAGACCCATGCA GGGTTGCAAGATGTGTGCTTCAAAACTCTGCCTCTATTGCAGGACTTATTTTAATGACGC AAGCTATGATGTTCGACAAAATAAAGAAGAAAAAGTCCACCATTCCTCAAATTCCTGGCA TCCCACCATTGCAGATAAATCAAAATGCTTAGATTTGAACTAGTAACTTACTGTCATTGA AGAAAGGTCCATGATGCAAGGCCTTTGTTTGATCGGTTAGATGAGTTGAACCAAGAATTG GAAGTGGAGCCTCTGAGCAGATCATCAGCTGGAGCCACTGGGTACGATAACGGAGGAAAA GATCTACTTCTATGGTTCAGATATCAGTAACTTAAAACTAACTGTATACTAGTCAGCAAA ATGTCTCCATATCCCTCTTCTCTCTTTTCCCTTGGAGGTGCAAGGAGCATTTTTTTTCCT TCACAATTTTGTAACGTAGAAGATAGGATTACTAATCCATTGCAGATCCCAAAATGTTGA ACGTGCTAGTTTTATTGTACTTTTATATCTTCATGAATGTGCATGATGATTTGCTTGATA CTACTTTAAAAAAAAAAGA



consensusID : consensus_8592#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 757
fasta sequence
                              [AATTATCAAAGTATATTCCCAGTATCATGGATCTTGTAGATGACTCTGAAGAGAAGATTGGTGTAAATATAGTTGGGAAGGCACTTCTCGTCCCTGCTATGACGATAGCTCGCAATGCTGGGGCAGATGGTCCAGCTGTTGTAGAGAAGCTTCTTGCGAGTGAATGGCGAGTTGGATACAATGCAATGACTGACAAATTTGAAGACCTTGTTGATGCTGGTGTGGTAGACCCATGCAGGGTTGCAAGATGTGTGCTTCAAAACTCTGCCTCTATTGCAGGACTTATTTTAATGACGCAAGCTATGATGTTCGACAAAATAAAGAAGAAAAAGTCCCCCATTCCTCAAATTCCTGGCATCCCACCATTGCAGATAAATCAAAATGCTTAGATTTGAACTAGTAACTTACTGTCATTGAAGAAAGGTCCATGATGCAAGGCCTTTGTTTGATCGGTTAGATGAGTTGAACCAAGAATTGGAAGTGGAGCCTCTGAGCAGATCATCAGCTGGAGCCACTGGGTACGATAACGGAGGAAAAGATCTACTTCTATGGTTCAGATATCAGTAACTTAAAACTAACTGTATACTAGTCAGCAAAATGTCTCCATATCCCTCTTCTCTCTTTTCCCTTGGAGGTGCAAGGAGCATTTTTTTTCCTTCACAATTTTGTAACGTAGAAGATAGGATTACTAATCCATTGCAGATCCCAAAAAGTGGAACGTGCTAGTTTTATTGTAAAAAAAAAAAACAATAAAAGA]

[-] EMBL CB653365             [AATTATCAAAGTATATTCCCAGTATCATGGATCTTGTAGATGACTCTGAAGAGAAGATTGGTGTAAATATAGTTGGGAAGGCACTTCTCGTCCCTGCTATGACGATAGCTCGCAATGCTGGGGCAGATGGTCCAGCTGTTGTAGAGAAGCTTCTTGCGAGTGAATGGCGAGTTGGATACAATGCAATGACTGACAAATTTGAAGACCTTGTTGATGCTGGTGTGGTAGACCCATGCAGGGTTGCAAGATGTGTGCTTCAAAACTCTGCCTCTATTGCAGGACTTATTTTAATGACGCAAGCTATGATGTTCGACAAAATAAAGAAGAAAAAGTCCCCCATTCCTCAAATTCCTGGCATCCCACCATTGCAGATAAATCAAAATGCTTAGATTTGAACTAGTAACTTACTGTCATTGAAGAAAGGTCCATGATGCAAGGCCTTTGTTTGATCGGTTAGATGAGTTGAACCAAGAATTGGAAGTGGAGCCTCTGAGCAGATCATCAGCTGGAGCCACTGGGTACGATAACGGAGGAAAAGATCTACTTCTATGGTTCAGATATCAGTAACTTAAAACTAACTGTATACTAGTCAGCAAAATGTCTCCATATCCCTCTTCTCTCTTTTCCCTTGGAGGTGCAAGGAGCATTTTTTTTCCTTCACAATTTTGTAACGTAGAAGATAGGATTACTAATCCATTGCAGATCCCAAAAAGTGGAACGTGCTAGTTTTATTGTAAAAAAAAAAAACAATAAAAGA]


>consensus_8592#1 AATTATCAAAGTATATTCCCAGTATCATGGATCTTGTAGATGACTCTGAAGAGAAGATTG GTGTAAATATAGTTGGGAAGGCACTTCTCGTCCCTGCTATGACGATAGCTCGCAATGCTG GGGCAGATGGTCCAGCTGTTGTAGAGAAGCTTCTTGCGAGTGAATGGCGAGTTGGATACA ATGCAATGACTGACAAATTTGAAGACCTTGTTGATGCTGGTGTGGTAGACCCATGCAGGG TTGCAAGATGTGTGCTTCAAAACTCTGCCTCTATTGCAGGACTTATTTTAATGACGCAAG CTATGATGTTCGACAAAATAAAGAAGAAAAAGTCCCCCATTCCTCAAATTCCTGGCATCC CACCATTGCAGATAAATCAAAATGCTTAGATTTGAACTAGTAACTTACTGTCATTGAAGA AAGGTCCATGATGCAAGGCCTTTGTTTGATCGGTTAGATGAGTTGAACCAAGAATTGGAA GTGGAGCCTCTGAGCAGATCATCAGCTGGAGCCACTGGGTACGATAACGGAGGAAAAGAT CTACTTCTATGGTTCAGATATCAGTAACTTAAAACTAACTGTATACTAGTCAGCAAAATG TCTCCATATCCCTCTTCTCTCTTTTCCCTTGGAGGTGCAAGGAGCATTTTTTTTCCTTCA CAATTTTGTAACGTAGAAGATAGGATTACTAATCCATTGCAGATCCCAAAAAGTGGAACG TGCTAGTTTTATTGTAAAAAAAAAAAACAATAAAAGA



consensusID : consensus_8592#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 751
fasta sequence
                              [AAACCCTCATCTCCGCGCCGCCGCCTCCGCCTCTGCTCCGCCGCTCCCAACCCTGCGCGGCGGGCGGCGGTGAGCCGGTCTGCTCTTCCCTCTACCGGCCGCCCACGCTGCTCCTCACGGCGCTCTCGATTCCTGGTTCCTCTCCCCGTGGGCCTCCATGTCTTTGACCACCGTTTCTTTCTCATACCCCGCCAAGCCGCTTCCCAAATGGCCGTGCACGCTGCCTAAGCCGCCGCCGAGGGCTCGCTGCCGTTTTGTGGTGCGGGCGGACGTCAAGGTGATCTCTTCCGGTGAGGCCTGCCGCCGTGGGCTCGCCGCCGGCATCGACAAGCTCGCCGACGCCGTCGCGGTCACTCTAGGCCCCAAAGGCAGGAATGTTGTTATTGACCAAGACGATGTTCCTAAAGTAATCAATGATGGTATCACAATTGCCAAGGCTATAGAGCTCCCAAATGCTGTTGAGCACGCAGGTGCCATGTTACTTCAAGAGATAGCATCCAAGACGAATAGTTCTGTTGGCGATGGAACAACAACTGCTATTATTTTGGCAAGAGAAATTATCAATCTTGGGTTGTTGGCAGTAGCCACTGGTGCTAACCCAGTTGCCCTGAGAAAGGGTATTGACAAAGCTGTTCATGAACTTATTGGGATCTTGAAGACTAAATGTATCCCTGTAAGTACAAAGGAGGACATAAAAGCTGTTGCTTCAATATCAGCTGGCAATGATGAATATGTTGGCGATCTCATTGCT]

[+] EMBL CB669714             [AAACCCTCATCTCCGCGCCGCCGCCTCCGCCTCTGCTCCGCCGCTCCCAACCCTGCGCGGCGGGCGGCGGTGAGCCGGTCTGCTCTTCCCTCTACCGGCCGCCCACGCTGCTCCTCACGGCGCTCTCGATTCCTGGTTCCTCTCCCCGTGGGCCTCCATGTCTTTGACCACCGTTTCTTTCTCATACCCCGCCAAGCCGCTTCCCAAATGGCCGTGCACGCTGCCTAAGCCGCCGCCGAGGGCTCGCTGCCGTTTTGTGGTGCGGGCGGACGTCAAGGTGATCTCTTCCGGTGAGGCCTGCCGCCGTGGGCTCGCCGCCGGCATCGACAAGCTCGCCGACGCCGTCGCGGTCACTCTAGGCCCCAAAGGCAGGAATGTTGTTATTGACCAAGACGATGTTCCTAAAGTAATCAATGATGGTATCACAATTGCCAAGGCTATAGAGCTCCCAAATGCTGTTGAGCACGCAGGTGCCATGTTACTTCAAGAGATAGCATCCAAGACGAATAGTTCTGTTGGCGATGGAACAACAACTGCTATTATTTTGGCAAGAGAAATTATCAATCTTGGGTTGTTGGCAGTAGCCACTGGTGCTAACCCAGTTGCCCTGAGAAAGGGTATTGACAAAGCTGTTCATGAACTTATTGGGATCTTGAAGACTAAATGTATCCCTGTAAGTACAAAGGAGGACATAAAAGCTGTTGCTTCAATATCAGCTGGCAATGATGAATATGTTGGCGATCTCATTGCT]


>consensus_8592#2 AAACCCTCATCTCCGCGCCGCCGCCTCCGCCTCTGCTCCGCCGCTCCCAACCCTGCGCGG CGGGCGGCGGTGAGCCGGTCTGCTCTTCCCTCTACCGGCCGCCCACGCTGCTCCTCACGG CGCTCTCGATTCCTGGTTCCTCTCCCCGTGGGCCTCCATGTCTTTGACCACCGTTTCTTT CTCATACCCCGCCAAGCCGCTTCCCAAATGGCCGTGCACGCTGCCTAAGCCGCCGCCGAG GGCTCGCTGCCGTTTTGTGGTGCGGGCGGACGTCAAGGTGATCTCTTCCGGTGAGGCCTG CCGCCGTGGGCTCGCCGCCGGCATCGACAAGCTCGCCGACGCCGTCGCGGTCACTCTAGG CCCCAAAGGCAGGAATGTTGTTATTGACCAAGACGATGTTCCTAAAGTAATCAATGATGG TATCACAATTGCCAAGGCTATAGAGCTCCCAAATGCTGTTGAGCACGCAGGTGCCATGTT ACTTCAAGAGATAGCATCCAAGACGAATAGTTCTGTTGGCGATGGAACAACAACTGCTAT TATTTTGGCAAGAGAAATTATCAATCTTGGGTTGTTGGCAGTAGCCACTGGTGCTAACCC AGTTGCCCTGAGAAAGGGTATTGACAAAGCTGTTCATGAACTTATTGGGATCTTGAAGAC TAAATGTATCCCTGTAAGTACAAAGGAGGACATAAAAGCTGTTGCTTCAATATCAGCTGG CAATGATGAATATGTTGGCGATCTCATTGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8592#0      GAGAAGGAGAAATGTTGATTTCTTGAGAGTTGAGACGAGGAAGAAGAGCAAGCGGATAAA 60
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      CCACCTGTGCTAAAACCCTCATCGCCGCGCCGCCGCCTCCGCCTCTGCTCCGCCGCTCCC 120
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      AACCCTGCGCGGCGGGCGGCGGTGAGCCGGTCTGCTCTTCCCTCTACCGGCCGCCCACGC 180
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      TGCTCCTCACGGCGCTCTCGATTCCTGGTTCCTCTCCCCGTGGGCCTCCATGTCTTTGAC 240
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      CACCGTTTCTTTCTCATACCCCGCCAAGCCGCTTCCCAAATGGCCGTGCACGCTGCCTAA 300
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      GCCGCCGCCGAGGGCTCGCTGCCGTTTTGTGGTGCGGGCGGACGTCAAGGTGATCTCTTC 360
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      CGGTGAGGCCTGCCGCCGTGGGCTCGCCGCCGGCATCGACAAGCTCGCCGACGCCGTCGC 420
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      GGTCACTCTAGGCCCCAAAGGCAGGAATGTTGTTATTGACCAAGACGATGTTCCTAAAGT 480
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      AATCAATGATGGTATCACAATTGCCAAGGCTATAGAGCTCCCAAATGCTGTTGAGCACGC 540
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      AGGTGCCATGTTACTTCAAGAGATAGCATCCAAGACGAATAGTTCTGTTGGCGATGGAAC 600
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      AACAACTGCTATTATTTTGGCAAGAGAAATTATCAATCTTGGGTTGTTGGCAGTAGCCAC 660
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      TGGTGCTAACCCAGTTGCCCTGAGAAAGGGTATTGACAAAGCTGTTCATGAACTTATTGG 720
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      GATCTTGAAGACTAAATGTATCCCTGTAAGTACAAAGGAGGACATAAAAGGTAATTTTGT 780
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      CACCTGGGAAGCATACATCACGAGCACAGAAATACGGAATAATAAACCATACCCACTAGA 840
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      CTAGTAACCTTTCCTTTTTATTTTAGAAAGCATATAGTCGATATAGCATGAAGCATATCA 900
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      TGATTTGTCTGTGAATGCACCGAAATTATTCTGTGGTCAGATTATAAAATGTTGTAAATC 960
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      TCTAAATTTCATTTTCAGCTGTTGCTTCAATATCAGCTGGCAATGATGAATATGTTGGCG 1020
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      ATCTCATTGCTGATGCATTGGAGAAGATAGGTCCTGATGGAATAATTAAAATTGAGTCCT 1080
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      CATCTTCAATATATACTTCAGTTGAGGTGCAAGAAGGAATGAAGATAGACAAAGGTTATA 1140
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      TCTCTCCACATTTCATCACAAATCAAGACAAAGCAATTGTTGAATTTGAAAATGCTAGGG 1200
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      TACTTTTAACTGATCAGCGGGTGGATGATGTCCAAGAGATACTTCCTTTGCTAGAGAAGA 1260
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      CCACACAGTTGAGTGTCCCTTTGTTGATTATTGCGGAGGATGTTTCACATACGGTGTATT 1320
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      CAACTCTTGTTCTTAACAAACTGAATGGACTGCTAAATGTTGCTGTTGTTAAATGTCCTG 1380
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      GTTTGGGAGATGAAAAGAAGGCTATTCTCCAAGATATTGCTATTATGACAGGTGCAGATT 1440
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      TCTTTGCTAGTGACCTTGGCTGGTGTCTTCAAGGTGCTACTTCTGATCAGCTAGGTATGG 1500
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      CTCAGAAGATCACTATAACAAGTGATACTACTACTATCATTGCACATCCTTCGATGAGAC 1560
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      CAGAAATTGAGGCCAGAATTCAGCAACTTAAGAAAGATCTAGAGGAGACAACAAGTGCCT 1620
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      ATCTAAAAGAAAGGTTTTCATCTCGTATCGCTAAACTCTCAAGAGGTATTGCAGTTATCA 1680
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      AGGTTGGTGCAGCTACTGAAGCTGAACTCGAGGATAGGAAACTGAGAGCGGAGGATGCAA 1740
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      ------------------------------------------------------------
                                                                                  

consensus_8592#0      AAAATGCAACCTTTGCAGCCATTAGCGAAGGCATAACTCCTGGAGGTGGTGTGACGTATG 1800
consensus_8592#1      ------------------------------------------------------------
consensus_8592#2      --------------------------------------------------------AAAC 4
                                                                                  

consensus_8592#0      TTCAATTATCAAAGTATATTCCCAGTATCATGGATCTTGTAGATGACTCTGAAGAGAAGA 1860
consensus_8592#1      ---AATTATCAAAGTATATTCCCAGTATCATGGATCTTGTAGATGACTCTGAAGAGAAGA 57
consensus_8592#2      CCTCATCTCCGCGCCGCCGCCTCCGCCTCTGCTCCGCCGCTCCCAACCCTGCGCGGCGGG 64
                          **   *          * * *  **         *      ** ***    *  * 

consensus_8592#0      TTGGTGTAAATATAGTTGGGAAGGCACTTCTCGTCCCTGCTATGACGATAGCTCGCAATG 1920
consensus_8592#1      TTGGTGTAAATATAGTTGGGAAGGCACTTCTCGTCCCTGCTATGACGATAGCTCGCAATG 117
consensus_8592#2      CGGCGGTGAGC-CGGTCTGCTCTTCCCTCTACCGGCCGCCCACGCTGCTC-CTCACGGCG 122
                        *  ** *     **  *     * **   *   **  * * *  * *  *** *   *

consensus_8592#0      CTGG-GGCAGATGGTCCAGCTGTTGTAGAGAAGCTTCTTGCGAGTGAATGGCGAGTTGG- 1978
consensus_8592#1      CTGG-GGCAGATGGTCCAGCTGTTGTAGAGAAGCTTCTTGCGAGTGAATGGCGAGTTGG- 175
consensus_8592#2      CTCTCGATTCCTGGTTC--CTCTCCCCGTGGGCCTCCATGTCTTTGACCACCGTTTCTTT 180
                      **   *     **** *  ** *    * *   ** * **    ***    **  *    

consensus_8592#0      ---ATACAATGCAATGAC---TGACAAAT--TTGAAGACCTTGTTGATGCTGGTGTGGTA 2030
consensus_8592#1      ---ATACAATGCAATGAC---TGACAAAT--TTGAAGACCTTGTTGATGCTGGTGTGGTA 227
consensus_8592#2      CTCATACCCCGCCAAGCCGCTTCCCAAATGGCCGTGCACGCTGCCTAAGCCGCCGCCGAG 240
                         ****   ** * * *   *  *****    *   **  **   * ** *  *  *  

consensus_8592#0      GACCCA-TGCAGGGTTGCAAGATGTGTG--CTTCAAAACTCTGCCTCTATTGCAGGACTT 2087
consensus_8592#1      GACCCA-TGCAGGGTTGCAAGATGTGTG--CTTCAAAACTCTGCCTCTATTGCAGGACTT 284
consensus_8592#2      GGCTCGCTGCCGTTTTGTGGTGCGGGCGGACGTCAAGGTGAT-CTCTTCCGGTGAGGCCT 299
                      * * *  *** *  ***      * * *  * ****     * *   *   *   * * *

consensus_8592#0      ATTTTAATGACGCAAGCTATGATGTTCGACAAAAT----AAAGAAGAAAAAGTCCACCAT 2143
consensus_8592#1      ATTTTAATGACGCAAGCTATGATGTTCGACAAAAT----AAAGAAGAAAAAGTCCCCCAT 340
consensus_8592#2      GCCGCCGTGG-GCTCGCCGCCGGCATCGACAAGCTCGCCGACGCCGTCGCGGTCACTCTA 358
                             **  **  **        *******  *     * *  *     ***   *  

consensus_8592#0      TCCTCAAATTCCTGGCATCCCACCATTGCAGATAAATCAAAATGCTTAGATTTGAACTAG 2203
consensus_8592#1      TCCTCAAATTCCTGGCATCCCACCATTGCAGATAAATCAAAATGCTTAGATTTGAACTAG 400
consensus_8592#2      GGCCCCAAAGGCAGGAATGTTGTTATTG--ACCAAGACGATGTTCCTAAAGT--AATCAA 414
                        * * **   * ** **      ****     **  * *  * * ** * *  **  * 

consensus_8592#0      TAACTTACTGTCATTGAAGAAAGGTCCATGATGC-----AAGGCCTTTGTTTGATCGGTT 2258
consensus_8592#1      TAACTTACTGTCATTGAAGAAAGGTCCATGATGC-----AAGGCCTTTGTTTGATCGGTT 455
consensus_8592#2      TGA--TGGTATCACAATTGCCAAGGCTATAGAGCTCCCAAATGCTGTTGAGCACGCAGGT 472
                      * *  *  * ***     *  * * * **   **     ** **  ***      * * *

consensus_8592#0      AGATGAGTTGAACCAAGAATTGGAAGTGGAGCCTCTGAGCAGATC-ATCAGC--TGGAGC 2315
consensus_8592#1      AGATGAGTTGAACCAAGAATTGGAAGTGGAGCCTCTGAGCAGATC-ATCAGC--TGGAGC 512
consensus_8592#2      -GCCATGTTACTTCAAGAGATAGCATCCAAGAC---GAATAGTTCTGTTGGCGATGGAAC 528
                       *    ***    *****  * * *    ** *   **  ** **  *  **  **** *

consensus_8592#0      CACTG--GGTACGATAACGGAGGAAAAGATCTACTTCTATGGTTCAGATATCAGTAACT- 2372
consensus_8592#1      CACTG--GGTACGATAACGGAGGAAAAGATCTACTTCTATGGTTCAGATATCAGTAACT- 569
consensus_8592#2      AACAACTGCTATTATTTTGGCAAGAGAAATTATCAATCTTGGGTT-GTTGGCAGTAGCCA 587
                       **    * **  **   **    * * **   *     *** *  * *  ***** *  

consensus_8592#0      -TAAAACTAACTGTATACTAGTCAGCAAAATGTCTCCATATCCCTCTTCTCTCTTTTCCC 2431
consensus_8592#1      -TAAAACTAACTGTATACTAGTCAGCAAAATGTCTCCATATCCCTCTTCTCTCTTTTCCC 628
consensus_8592#2      CTGGTGCTAACCCAGTTGCCCTGAG-AAAGGGTATTGACAAAGCTGTTCATGAACTT--A 644
                       *    *****    *     * ** ***  ** *  * *   ** ***      **   

consensus_8592#0      TTGGAGGTGCAAGGAGCATTTTTTTTCCTTCACAATTTTGTAACGTAGAAGATAGGA-TT 2490
consensus_8592#1      TTGGAGGTGCAAGGAGCATTTTTTTTCCTTCACAATTTTGTAACGTAGAAGATAGGA-TT 687
consensus_8592#2      TTGGGATCTTGAAGACTAAATGTATCCCTGTAAG----TACAAAGGAGGACATAAAAGCT 700
                      ****       * **  *  * * * ***  *      *  ** * ** * ***  *  *

consensus_8592#0      ACTAATCCATTG-CAGATCCCAAAATGTTGAACGT-GCTAGTTTTATTGTACTTTTATAT 2548
consensus_8592#1      ACTAATCCATTG-CAGATCCCAAAAAGTGGAACGT-GCTAGTTTTATTGTAAAAAAAAAA 745
consensus_8592#2      GTTGCTTCAATATCAGCTGGCAATGATGAATATGTTGGCGATCTCATTGCT--------- 751
                        *  * ** *  *** *  ***        * ** *    * * ****           

consensus_8592#0      CTTCATGAATGTGCATGATGATTTGCTTGATACTACTTTAAAAAAAAAAGA 2599
consensus_8592#1      AACAATAAAAGA--------------------------------------- 757
consensus_8592#2      ---------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)