These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [CGTCACGTTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGGCCTCGCGCGCGCCGCGCCGGGCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGAACACCCGGCGGCGGGCGCCGGCGGGGAACTCTCACAAGGGGGTGTTCGGTACGCGCCGTACTCCGACGGCTACAAAAGCTTCACAGCGGTGCACGAANCGCACTACATTACCAAGTCANGGTCTCNGNGCGCGCACGCTCCCGCCGTCATCNAGGGTCGCGCGCGGAGCCGTCACCGCGTCNTCTACACGCTGCTGCTCACTGGTCGCCACTCCCCGCGACATGGTCCCTCCGCTGTACTGGATCACCGGCGCCGTGCTCGCGCCTACTCCACTACTTCGTGACGGCGGTCAAGAATCCCGCGCGGCGNCGGACGATGCCCTCCTCCGGTCCCGCTCGTNCACTCCTCTCTCCATCCAAAACTANCTNCTTCAANTCCAATCTCCTT] [+] EMBL AA752011 [CGTCACGTTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGGCCTCGCGCGCGCCGCGCCGGGCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGAACACCCGGCGGCGGGCGCCGGCGGGGAACTCTCACAAGGGGGTGTTCGGTACGCGCCGTACTCCGACGGCTACAAAAGCTTCACAGCGGTGCACGAANCGCACTACATTACCAAGTCANGGTCTCNGNGCGCGCACGCTCCCGCCGTCATCNAGGGTCGCGCGCGGAGCCGTCACCGCGTCNTCTACACGCTGCTGCTCACTGGTCGCCACTCCCCGCGACATGGTCCCTCCGCTGTACTGGATCACCGGCGCCGTGCTCGCGCCTACTCCACTACTTCGTGACGGCGGTCAAGAATCCCGCGCGGCGNCGGACGATGCCCTCCTCCGGTCCCGCTCGTNCACTCCTCTCTCCATCCAAAACTANCTNCTTCAANTCCAATCTCCTT] consensusID : consensus_8595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 435 fasta sequence [CTCTCGCAATGCCGGCCATGGAGGAGGAGGC-GGTGGCCAACGAGGCGCATCACTTCCTCGTCGTCACGTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGCGCCTCGC-GCGCGCCGCGCCG-G-GCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGACGCCGCGGCTGCGGGCGCCGGCGGGGAGCTCGTCGACGAGGGGGGTGTGCGGTACGCGCCGTACTCCGACGGCTACGACGACGGC-TTCGACAGGGCGGTGCACGACAGCGCCAGCTACATGACCCAGGTCAGGGTCGTCGGCGCGCGCACGCTTCGCCGGCGTCATCGAGGGGTTCCGCGCCGCCGGGAGGCCCGTCACCCGCGTCGTCTACACGCTGCTGCTCACCTGGGTCGCCGACGTCGCC] [+] EMBL AU067882 [CTCTCGCAATGCCGGCCATGGAGGAGGAGGC GGTGGCCAACGAGGCGCATCACTTCCTCGTCGTCACGTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGCGCCTCGC GCGCGCCGCGCCG G GCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGACGCCGCGGCTGCGGGCGCCGGCGGGGAGCTCGTCGACGAGGGGGGTGTGCGGTACGCGCCGTACTCCGACGGCTACGACGACGGC TTCGACAGGGCGGTGCACGACAGCGCCAGCTACATGACCCAGGTCAGGGTCGTCGGCGCGCGCACGCTTCGCCGGCGTCATC ] [+] EMBL C26701 [ TCGCAATGCCGGCCATGGAGGAGGAGGC GGTGGCCAACGAGGCGCATCACTTCCTCGTCGTCACGTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGNGCGGCGCCTCG G GCGCCNCGCNG GNGCGCCCGCTTNACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGACG CNCGGCTGCGGGCGCCGGCGGGGAGCTCGTNGACGAGGGGGGTNTNCGGTA CGCCGTACTTCGACGGCT ] [+] EMBL AU166366 [ CGCAATGCCGGCCATGGAGGAGGAGGCAGGNGGCCAACGAGGCGCATCACTTCCTCGTCGTCACGTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGCGCCTCGC GCGCGCCGCGCCG G GCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGACGCCGCGGCTGCGGGCGCCGGCGGGGAGCTCGTCGACGAGGGGGGTGTGCGGTACGCGCCGTACTCCGACGGCTACGACGACGGC TTCGACAGGGCGGTGCACGACAGCGCCAGCTACATGACCCAGGTCAGGGTCGTCGGCGCGCGCACGC TCGCCGCCGTCATCGAGGGGTTCCGCGCCGCCGGGAGGCCCGTCACCCGCGTCGTCTACACGCTGCTGCTCACCTGGGTCGCCGACGTCGCC] [+] EMBL C73104 [ GCAATGCCGGCCATGGAGGAGGAGGC GGTGGCCAACGAGGCGCATCACTTCCTCGTCGTCACGTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGCGCCTCGCNGCGC NCGCNNCGNG GCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGACG CGCGGCTGCGGGCGCCGGCGGGGAGCTCGTCGACGAGGGGGGTGTGCGGTAC NGCCGTACTCCGACGGCTACGACGACGGCTTTCGACAAGGCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8595#0 ------------------------------------------------------------ consensus_8595#1 CTCTCGCAATGCCGGCCATGGAGGAGGAGGCGGTGGCCAACGAGGCGCATCACTTCCTCG 60 consensus_8595#0 -CGTCACGTTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGG-GCCTC 58 consensus_8595#1 TCGTCACGT-ACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGCGCCTC 119 ******** ******************************************** ***** consensus_8595#0 GCGCGCGCCGCGCCGGGCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAG 118 consensus_8595#1 GCGCGCGCCGCGCCGGGCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAG 179 ************************************************************ consensus_8595#0 ATGTTCGGCGAACACCCGGCGGCGGGCGCCGGCGGGGAACTCTC--ACAAGGGGG-TGTT 175 consensus_8595#1 ATGTTCGGCGACGCCGCGGCTGCGGGCGCCGGCGGGGAGCTCGTCGACGAGGGGGGTGTG 239 *********** * **** ***************** *** ** ****** *** consensus_8595#0 CGGTACGCGCCGTACTCCGACGGCTACAAAA---GCTTC---ACAGCGGTGCACGA-ANC 228 consensus_8595#1 CGGTACGCGCCGTACTCCGACGGCTACGACGACGGCTTCGACAGGGCGGTGCACGACAGC 299 *************************** * ***** * *********** * * consensus_8595#0 GC--ACTACATTACC-AAGTCANGGTC-TCNGNGCGCGCACGCTCC--CGCCGTCATCNA 282 consensus_8595#1 GCCAGCTACATGACCCAGGTCAGGGTCGTCGGCGCGCGCACGCTTCGCCGGCGTCATCGA 359 ** ****** *** * **** **** ** * *********** * ** ******* * consensus_8595#0 GGG-TCGCGCGC-----GGAG--CCGTCACC-GCGTCNTCTACACGCTGCTGCTCACT-- 331 consensus_8595#1 GGGGTTCCGCGCCGCCGGGAGGCCCGTCACCCGCGTCGTCTACACGCTGCTGCTCACCTG 419 *** * ***** **** ******** ***** ******************* consensus_8595#0 GGTCGCCACTCCCCGCGACATGGTCCCTCCGCTGTACTGGATCACCGGCGCCGTGCTCGC 391 consensus_8595#1 GGTCGCCGACGTCGCC-------------------------------------------- 435 ******* * * consensus_8595#0 GCCTACTCCACTACTTCGTGACGGCGGTCAAGAATCCCGCGCGGCGNCGGACGATGCCCT 451 consensus_8595#1 ------------------------------------------------------------ consensus_8595#0 CCTCCGGTCCCGCTCGTNCACTCCTCTCTCCATCCAAAACTANCTNCTTCAANTCCAATC 511 consensus_8595#1 ------------------------------------------------------------ consensus_8595#0 TCCTT 516 consensus_8595#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||