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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1396 fasta sequence
[CCAACTTCATATGTAGTATATCATTTATGGTAGAGTTTTTGAGTGTTGAAGCCCTTAACATTGGCACTGTAGTCCTTCCTCAGCTCCACATACCACCATCTATTCATTTTAACACAAAGATTTTCCTCTTGTTCCTTTTTCTTAGAGAATTCATATTTCCTATAGCAGATCAAGTCCTATGGAAGAAGAATTCAAGGACAAAGGCCTCCCTCCCACGCTGCTACACCTCATCCCTGACGGGAGAGAATGGAAGGTGAAAGAAGCAGATGGAGAAGGATCAAGGAACACAAACTTAGATGCCGATGAGGATAAGGAGCTAGAGCTTAAGCTCGGCCTCCCTGGTGTCCAACAGGAAGAGAGAGCAGCTGATTCAAGAGAGAAGATACAGCAGCAACAACGAGAGAGTTCCTCAGAACCATCCATCGGTTGCTTCCCTACACATTCAAAGCCTACCACCAGCATCGGCACAACTGGGGCAAAGAGAGGATTTTTTGCGATTGTTGGGGCCACACTAGAAGGTTATAATCAGAGCCACCGGGACACAGAAGAATGTGGGAAGGAGCTAACGTTAGGAGATGAAAATATGGCAGGTGAGAGGAAGAAAGGATGCTGTCCCTCACCACCATGCTCAGCTGCAGCGCACAGCAGCAACCCCCAGGGGAGAGGTGCTATTCCTCCAGTAGTCGGTTGGCCTCCAATCCGGTCCTTCAGGAGAAACCTCACAAATGGCAGTTCATTTAAACAGTCCCCTGAACGACAAAATGACGAAGCTGATGACAAGGCAAAGCCAATC-TGCAAGAAGAGACCTCTTGTCAAAATCAACATGGATGGGATCCCCATTGGAA-GGAAAGTAGACC-TTCAAATATACGACAGC-TACCAGAAGC-TGTCATCTGCTGTT-GAAGAGTTGTTCCGTGGTTTT--CTTGAAGCTCAAAAAGATCTATCTTGTGCTGAAAGTGGAGAGCAAGGGGCAGAAGACAAAATATTTTCAGGGTTGTT-GGATGGAACT-GGTGTATACACTTTA-GTATATGAA-GACAATGATGGAGACA-GAATGTT-A-GCTGGGGACATACCATGGAAGGTATTTGTTTCGACTGTTAAGAGGTTGAGGGTTATGAGGAGGTCAGAACTTCCCCATGACATGATTGGAGCTGACCCTGTGAAGTAGCAAATCGTTGATATTAGGGTCCAGACATATCAATTGTGCAAACCATAGTCCATCACCTTTCTGGGGGATGACCTGTTTTTGGCTTGTACAGATGATTATGATAATGGGAAAATAGCATCTTGCAGGTGCAGTGGACAAACTGCATATTTTGTAAATGACCTACTCTTTTTCAGATATAACAGATTGGTGTAATTCTATAAGTTATAGATTTCTTGACAAAGGTGCCAAAAAAAA]
[+] EMBL AK071192 [CCAACTTCATATGTAGTATATCATTTATGGTAGAGTTTTTGAGTGTTGAAGCCCTTAACATTGGCACTGTAGTCCTTCCTCAGCTCCACATACCACCATCTATTCATTTTAACACAAAGATTTTCCTCTTGTTCCTTTTTCTTAGAGAATTCATATTTCCTATAGCAGATCAAGTCCTATGGAAGAAGAATTCAAGGACAAAGGCCTCCCTCCCACGCTGCTACACCTCATCCCTGACGGGAGAGAATGGAAGGTGAAAGAAGCAGATGGAGAAGGATCAAGGAACACAAACTTAGATGCCGATGAGGATAAGGAGCTAGAGCTTAAGCTCGGCCTCCCTGGTGTCCAACAGGAAGAGAGAGCAGCTGATTCAAGAGAGAAGATACAGCAGCAACAACGAGAGAGTTCCTCAGAACCATCCATCGGTTGCTTCCCTACACATTCAAAGCCTACCACCAGCATCGGCACAACTGGGGCAAAGAGAGGATTTTTTGCGATTGTTGGGGCCACACTAGAAGGTTATAATCAGAGCCACCGGGACACAGAAGAATGTGGGAAGGAGCTAACGTTAGGAGATGAAAATATGGCAGGTGAGAGGAAGAAAGGATGCTGTCCCTCACCACCATGCTCAGCTGCAGCGCACAGCAGCAACCCCCAGGGGAGAGGTGCTATTCCTCCAGTAGTCGGTTGGCCTCCAATCCGGTCCTTCAGGAGAAACCTCACAAATGGCAGTTCATTTAAACAGTCCCCTGAACGACAAAATGACGAAGCTGATGACAAGGCAAAGCCAATC TGCAAGAAGAGACCTCTTGTCAAAATCAACATGGATGGGATCCCCATTGGAA GGAAAGTAGACC TTCAAATATACGACAGC TACCAGAAGC TGTCATCTGCTGTT GAAGAGTTGTTCCGTGGTTTT CTTGAAGCTCAAAAAGATCTATCTTGTGCTGAAAGTGGAGAGCAAGGGGCAGAAGACAAAATATTTTCAGGGTTGTT GGATGGAACT GGTGTATACACTTTA GTATATGAA GACAATGATGGAGACA GAATGTT A GCTGGGGACATACCATGGAAGGTATTTGTTTCGACTGTTAAGAGGTTGAGGGTTATGAGGAGGTCAGAACTTCCCCATGACATGATTGGAGCTGACCCTGTGAAGTAGCAAATCGTTGATATTAGGGTCCAGACATATCAATTGTGCAAACCATAGTCCATCACCTTTCTGGGGGATGACCTGTTTTTGGCTTGTACAGATGATTATGATAATGGGAAAATAGCATCTTGCAGGTGCAGTGGACAAACTGCATATTTTGTAAATGACCTACTCTTTTTCAGATATAACAGATTGGTGTAATTCTATAAGTTATAGATTTCTTGA ]
[+] EMBL OSC4851 [ GACACAGAAGAATGTGGGAAGGAGCTAACGTTAGGAGATGAAAATATGGCAGGTGAGAGGAAGAAAGGATGCTGTCCCTCACCACCATGCTCAGCTGCAGCGCACAGCAGCAACCCCCAGGGGAGAGGTGCTATTCCTCCAGTAGTCGGTTGGCCTCCAATCCGGTCCTTCAGGAGAAACCTCACAAATGGCAGTTCATTTAAACAGTCCCCTGAACGACAAAATGACGAAGCTGATGACAAGGCAAAGCCAATCTTGCAAGAAGAGACCTCTTGTCAAAATCAACATGGATGGGATNCCCATTGGAAGGGAAAGTAGNCCTTTCAAATATACGACAGCTTACCAGAAGCTTGTCATCTGCTGTTNGAGGAGTTTTTCCGTGGTTTTTNTTTGAAGCTC AAAAGATCT ]
[+] EMBL AU174421 [ GGCAGAAGACAAAATATTTTCAGGGTTGTT GGATGGAACT GGTGTATACACTTTA GTATATGAA GNCAATGATGGAGACA GAATGTT A GCTGGGGACATACCATGGAAGGTATTTGTTTCGACTGTTAAGAGGTTGAGGGTTATGAGGAGGTCAGAACTTCCCCATGACATGATTGGAGCTGACCCTGTGAAGTAGCAAATCGTTGATATTAGGGTCCAGACATATCAATTGTGCAAACCATAGTCCATCACCTTTNTGGGGGATGACCTGTTTTTGGCTTGTACAGATGATTATGATAATGGGAAAATAGCATCTTGCAGGTGCAGTGGACAAACTGCATATTTTGTAAATGACCTACTCTTTTTCAGATATAACAGATTGGTGTAATTCTATAAGTTATAGATTTCTTGACAAAGGTGCCAAAAAAAA]
[+] EMBL AU097180 [ GTTCGGATGGAACTCGGTGTATACACTTTACGTATATGAACGACAATGATGGAGACANGAATGTTCACGCTGGGGACATACCATGGAAGGTATTTGTTTCGACTGTTAAGAGGTTGAGGGTTATGAGGAGGTCAGAACTTCCCCATGACATGATTGGAGCTGACCCTGTGAAGTAGCAAATCGTTGATATTAGGGTCCAGACATATCAATTGTGCAAACCATAGTCCATCACCTTTCTGGGGGATGACCTGTTTTTGGCTTGTACAGATGATTATGATAATGGGAAAATAGCATCTTGCAGGTGCAGTGGACAAACTGCATATTTTGTAAATGACCTACTCTTTTTCAGATATAACAGATTGGTGTAATTCTATAAaaaa ]
consensusID : consensus_8597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence
[ANGNAACGGCAGGCATCACANNAACTAGTACAAAAGCTAGCTGCTTCTTGTTAGTTCTGGCCTTCTNATAGCCATTCCTGGAGTTNTTGAGCCTTAGAGTTGGACAGGTTATTGCAGCTGTTCTTGGNGTCTGGTGAGTNATCAANTCCTATGGAAGANGANTTCANGGACAAAGGCCTCCCTCCCACGCTGCTACACCTCATCCCTGACGGGAGAGAATGGAAGGTGAAAGAGGCAG]
[+] EMBL OSS2746A [ANGNAACGGCAGGCATCACANNAACTAGTACAAAAGCTAGCTGCTTCTTGTTAGTTCTGGCCTTCTNATAGCCATTCCTGGAGTTNTTGAGCCTTAGAGTTGGACAGGTTATTGCAGCTGTTCTTGGNGTCTGGTGAGTNATCAANTCCTATGGAAGANGANTTCANGGACAAAGGCCTCCCTCCCACGCTGCTACACCTCATCCCTGACGGGAGAGAATGGAAGGTGAAAGAGGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8597#0 CCAACTTCATATGTAGTATATCATTTATGGTAGAGTTTTTGAGTGTTGAAGCCCTTAACA 60
consensus_8597#1 ------------------------------ANGNAACGGCAGGCATCACANNAACTAGTA 30
* * * * ** *
consensus_8597#0 TTGGCACT-GTAGTCCTTCCTCAGCTCCA-CATACCACCATCTATTCATTTTAACACAAA 118
consensus_8597#1 CAAAAGCTAGCTGCTTCTTGTTAGTTCTGGCCTTCTNATAGCCATTCCTGGAGTTNTTGA 90
** * * * * ** ** * * * * * **** * *
consensus_8597#0 GATTTTCCTCTTGTTCCTTTTTCTTAGAGAATTCATATTTCCTATAGCAGATCAAGTCCT 178
consensus_8597#1 GCCTTAGAGTTGGACAGGTTATTGCAGCTGTTCTTGGNGTCTGGTGAGTNATCAANTCCT 150
* ** * * ** * ** * ** * ***** ****
consensus_8597#0 ATGGAAGAAGAATTCAAGGACAAAGGCCTCCCTCCCACGCTGCTACACCTCATCCCTGAC 238
consensus_8597#1 ATGGAAGANGANTTCANGGACAAAGGCCTCCCTCCCACGCTGCTACACCTCATCCCTGAC 210
******** ** **** *******************************************
consensus_8597#0 GGGAGAGAATGGAAGGTGAAAGAAGCAGATGGAGAAGGATCAAGGAACACAAACTTAGAT 298
consensus_8597#1 GGGAGAGAATGGAAGGTGAAAGAGGCAG-------------------------------- 238
*********************** ****
consensus_8597#0 GCCGATGAGGATAAGGAGCTAGAGCTTAAGCTCGGCCTCCCTGGTGTCCAACAGGAAGAG 358
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 AGAGCAGCTGATTCAAGAGAGAAGATACAGCAGCAACAACGAGAGAGTTCCTCAGAACCA 418
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 TCCATCGGTTGCTTCCCTACACATTCAAAGCCTACCACCAGCATCGGCACAACTGGGGCA 478
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 AAGAGAGGATTTTTTGCGATTGTTGGGGCCACACTAGAAGGTTATAATCAGAGCCACCGG 538
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 GACACAGAAGAATGTGGGAAGGAGCTAACGTTAGGAGATGAAAATATGGCAGGTGAGAGG 598
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 AAGAAAGGATGCTGTCCCTCACCACCATGCTCAGCTGCAGCGCACAGCAGCAACCCCCAG 658
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 GGGAGAGGTGCTATTCCTCCAGTAGTCGGTTGGCCTCCAATCCGGTCCTTCAGGAGAAAC 718
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 CTCACAAATGGCAGTTCATTTAAACAGTCCCCTGAACGACAAAATGACGAAGCTGATGAC 778
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 AAGGCAAAGCCAATCTGCAAGAAGAGACCTCTTGTCAAAATCAACATGGATGGGATCCCC 838
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 ATTGGAAGGAAAGTAGACCTTCAAATATACGACAGCTACCAGAAGCTGTCATCTGCTGTT 898
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 GAAGAGTTGTTCCGTGGTTTTCTTGAAGCTCAAAAAGATCTATCTTGTGCTGAAAGTGGA 958
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 GAGCAAGGGGCAGAAGACAAAATATTTTCAGGGTTGTTGGATGGAACTGGTGTATACACT 1018
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 TTAGTATATGAAGACAATGATGGAGACAGAATGTTAGCTGGGGACATACCATGGAAGGTA 1078
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 TTTGTTTCGACTGTTAAGAGGTTGAGGGTTATGAGGAGGTCAGAACTTCCCCATGACATG 1138
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 ATTGGAGCTGACCCTGTGAAGTAGCAAATCGTTGATATTAGGGTCCAGACATATCAATTG 1198
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 TGCAAACCATAGTCCATCACCTTTCTGGGGGATGACCTGTTTTTGGCTTGTACAGATGAT 1258
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 TATGATAATGGGAAAATAGCATCTTGCAGGTGCAGTGGACAAACTGCATATTTTGTAAAT 1318
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 GACCTACTCTTTTTCAGATATAACAGATTGGTGTAATTCTATAAGTTATAGATTTCTTGA 1378
consensus_8597#1 ------------------------------------------------------------
consensus_8597#0 CAAAGGTGCCAAAAAAAA 1396
consensus_8597#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||