These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8612#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1670 fasta sequence [GGTTCAAAAGGCCTAGAAGAACGAAGCGGAGCTTAGCTCGCGCATGTGCCAACCTGAACCTCCGCTGCGAAACGCCGCGACATCTCGCCGCGCGAGCTAAGCTTAGCTGCAGGTGAGCCATCGGCGATGGCGACGGCGGCGATGACCAAGGTGTTCGTCCTGCTCTTTCTGGTGGCGGCGTGCTACCTGCCGGCGCACGCGGCGGCAGCGGAGTGCGACTGCGCGACGGACACGGCGGGGCGGGACAAGGCGCAGGCGCTGCGGCTCAAGGTCATCGCCATCTTCTGCATCCTCGCCGGGAGCACCGTCGGGGCGGCGCTGCCGTCACTGGGCGGCAGGTTCCCGGCGATCCAGCCGGAGACGGACGTGTTCCTCTCCGTCAAGGCCTTCGCCGGCGGCGTCATCCTCGCCACGGGCCTGGTGCACATCCTCCCCGCGGCCTTCGAGGCGCTCAGCTCGCCGTGCCTCGTCGGCGGCCCGTGGAAGCGCTTCCCGTTCGCCGGCATGGTCGCCATGGTCTCCGCCATCGGCACGCTCATCGTCGACACCGTCGCCACGGGGTACTTCCACCGCACGGACGCCAAGAGGAAGGCCGCGGCCGTCGCCGACGAGCCAGCCGACGACCTGGAGGCCTCCGACGAGCACAGCCACGGCCACGCCCACGGCATGTCCGTCATGTCCGTCGCTCCCGCCGGCGAGGAAGACCTCGTCCGCCACCGCGTCATCTCTCAGGTGCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCGCTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCATCAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGCAAAGTTCCGTGTCAGGTCAGTGGTGACGATGGCGCTCTTCTTCTCCCTGACGACGCCGGCCGGCATCGTCGTCGGGATCGGGATCTCCTCCGTCTACGACGCGAACAGCCCAACGGCGCTGGTGGTGCAGGGGCTCCTCGAGGCGGCGGCAGCGGGGATACTCGTCTACATGGCGCTCGTCGACATCCTCGCCGAGGACTTCATGAAGACCAAGGTGCAGAGAAGGGGACGCCTGCAGCTCGCCATGAACGTCGCGTTGCTGCTCGGCGCAGGGCTCATGTCCATGATCGCCATCTGGGCGTGATGAGTGAGTGACCATCACGGCCAGCATGCGACGTGCGGCGTTTCAATTTGTTCGGCAGGAATGGCAGGTTTTTGTTCTTAGGCGCGTCTGAT-CACGCTCGCGCTCTCGCGAAGACCTGAGAATTCGTTCGAGGATCTCAAAAGAGAGACCACTCCGTTGGTTGAAACTGACGAGGAGAGGGGTCTCCCGTGCACGATATGTAGAACAGTTCAGTGACCATGTTACTCTGACTTGACTGACTGACCCGTCATCGTCGTCGTTGCTCTCTTACTGTGCAGAACTTGTAGAGTCGTGCACTTGCGCCTACCACTGTCCTTCATCTTGGAGGACAATAATGCCAGTGGTGGGCAGAATTCTGGTCTTGATGTGAATCCGTGATGTACGGGGTAAGACAAGGCTCGTGAATGAGTATACTCCATATCTGTAAAGCTCTATCATATCCGAAGGTCATCACGAGTTAGTTAGAGTGTTAAAAAAAAAAA] [+] EMBL AK070864 [GGTTCAAAAGGCCTAGAAGAACGAAGCGGAGCTTAGCTCGCGCATGTGCCAACCTGAACCTCCGCTGCGAAACGCCGCGACATCTCGCCGCGCGAGCTAAGCTTAGCTGCAGGTGAGCCATCGGCGATGGCGACGGCGGCGATGACCAAGGTGTTCGTCCTGCTCTTTCTGGTGGCGGCGTGCTACCTGCCGGCGCACGCGGCGGCAGCGGAGTGCGACTGCGCGACGGACACGGCGGGGCGGGACAAGGCGCAGGCGCTGCGGCTCAAGGTCATCGCCATCTTCTGCATCCTCGCCGGGAGCACCGTCGGGGCGGCGCTGCCGTCACTGGGCGGCAGGTTCCCGGCGATCCAGCCGGAGACGGACGTGTTCCTCTCCGTCAAGGCCTTCGCCGGCGGCGTCATCCTCGCCACGGGCCTGGTGCACATCCTCCCCGCGGCCTTCGAGGCGCTCAGCTCGCCGTGCCTCGTCGGCGGCCCGTGGAAGCGCTTCCCGTTCGCCGGCATGGTCGCCATGGTCTCCGCCATCGGCACGCTCATCGTCGACACCGTCGCCACGGGGTACTTCCACCGCACGGACGCCAAGAGGAAGGCCGCGGCCGTCGCCGACGAGCCAGCCGACGACCTGGAGGCCTCCGACGAGCACAGCCACGGCCACGCCCACGGCATGTCCGTCATGTCCGTCGCTCCCGCCGGCGAGGAAGACCTCGTCCGCCACCGCGTCATCTCTCAGGTGCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCGCTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCATCAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGCAAAGTTCCGTGTCAGGTCAGTGGTGACGATGGCGCTCTTCTTCTCCCTGACGACGCCGGCCGGCATCGTCGTCGGGATCGGGATCTCCTCCGTCTACGACGCGAACAGCCCAACGGCGCTGGTGGTGCAGGGGCTCCTCGAGGCGGCGGCAGCGGGGATACTCGTCTACATGGCGCTCGTCGACATCCTCGCCGAGGACTTCATGAAGACCAAGGTGCAGAGAAGGGGACGCCTGCAGCTCGCCATGAACGTCGCGTTGCTGCTCGGCGCAGGGCTCATGTCCATGATCGCCATCTGGGCGTGATGAGTGAGTGACCATCACGGCCAGCATGCGACGTGCGGCGTTTCAATTTGTTCGGCAGGAATGGCAGGTTTTTGTTCTTAGGCGCGTCTGAT CACGCTCGCGCTCTCGCGAAGACCTGAGAATTCGTTCGAGGATCTCAAAAGAGAGACCACTCCGTTGGTTGAAACTGACGAGGAGAGGGGTCTCCCGTGCACGATATGTAGAACAGTTCAGTGACCATGTTACT ] [+] EMBL AY281300 [ GGCGATGGCGACGGCGGCGATGACCAAGGTGTTCGTCCTGCTCTTTCTGGTGGCGGCGTGCTACCTGCCGGCGCACGCGGCGGCAGCGGAGTGCGACTGCGCGACGGACACGGCGGGGCGGGACAAGGCGCAGGCGCTGCGGCTCAAGGTCATCGCCATCTTCTGCATCCTCGCCGGGAGCACCGTCGGGGCGGCGCTGCCGTCCCTGGGCGGCAGGTTCCCGGCGATCCAGCCGGAGACGGACGTGTTCCTCTCCGTCAAGGCCTTCGCCGGCGGCGTCATCCTCGCCACGGGCCTGGTGCACATCCTCCCCGCGGCCTTCGAGGCGCTCAGCTCGCCGTGCCTCGTCGGCGGCCCGTGGAAGCGCTTCCCGTTCGCCGGCATGGTCGCCATGGTCTCCGCCATCGGCACGCTCATCGTCGACACCGTCGCCACGGGGTACTTCCACCGCACGGACGCCAAGAGGAAGGCCGCGGCCGTCGCCGACGAGCCAGCCGACGACCTGGAGGCCTCCGACGAGCACAGCCACGGGCACGCCCACGGCATGTCCGTCATGTCCGTCGCTCCCGCCGGCGAGGAAGACCTCGTCCGCCACCGCGTCATCTCTCAGGTGCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCGCTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCATCAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGCAAAGTTCCGTGTCAGGTCAGTGGTGACGATGGCGCTCTTCTTCTCCCTGACGACGCCGGCCGGCATCGTCGTCGGGATCGGGATCTCCTCCGTCTACGACGCGAACAGCCCAACGGCGCTGGTGGTGCAGGGGCTCCTCGAGGCGGCGGCAGCGGGGATACTCGTCTACATGGCGCTCGTCGACATCCTCGCCGAGGACTTCATGAAGACCAAGGTGCAGAGAAGGGGACGCCTGCAGCTCGCCATGAACGTCGCGTTGCTGCTCGGCGCAGGGCTCATGTCCATGATCGCCATCTGGGCGTGATGAGTGAGTGACCAT ] [+] EMBL AU029809 [ GGCG TTNAATTTG TCGGCAGGAATGGCAGGTTTTTG TCTTAGGCCCGTCTGATCCAAGCTCGCNCTCTCGCGAAGACCTGAGAATTCGTTCGAGGATCTCAAAAGAGAGACCACTCCGTTGGTTGAAACTGACGAGGAGAGGGGTCTCCCGTGCACGATATGTAGAACAGTTCAGTGACCATGTTACTCTGACTTGACTGACTGACCCGTCATCGTCGTCGTTGCTCTCTTACTGTGCAGAACTTGTAGAGTCGTGCACTTGCGCCTACCACTGTCCTTCATCTTGGAGGACAATAATGCCAGTGGTGGGCAGAATTCTGGTCTTGATGTGAATCCGTGATGTACGGGGTAAGACAAGGCTCGTGAATGAGTATACTCCATATCTGTAAAGCTCTATCATATCCGAAGGTCATCACGAGTTAGTTAGAGTGTTAAAAAAAAAAA] consensusID : consensus_8612#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [AGCCTTCGGAGGAGCACACCCACGNCCACGCCCACGGCATGTCCGTCATNTCNGTCGCTCCCCCCGGNGAGGAGACTTCGTCCGCCACCGGTCATTTCTCAGGTATGTCATANACATCTCCCGCCACCGCGCCATTCAAGAAACAGAGCTGCGAAAACAAAAAAACGCAACCAAATTAAGAAAATTCAATCAAAATTTCTGTTCTTATTTTCTTAATCGATTTTGCTTGTGCGTCCTTGATGGTGGAGGNNCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCGCTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCATCAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATTTACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTTTTCGAGAGAGAGAGAGAGAGAGAAAGATTTCCACGTTTTTGGNGCTNANCTNGATNTCCAGATTACGAGGGC] [-] EMBL AA751631 [AGCCTTCGGAGGAGCACACCCACGNCCACGCCCACGGCATGTCCGTCATNTCNGTCGCTCCCCCCGGNGAGGAGACTTCGTCCGCCACCGGTCATTTCTCAGGTATGTCATANACATCTCCCGCCACCGCGCCATTCAAGAAACAGAGCTGCGAAAACAAAAAAACGCAACCAAATTAAGAAAATTCAATCAAAATTTCTGTTCTTATTTTCTTAATCGATTTTGCTTGTGCGTCCTTGATGGTGGAGGNNCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCGCTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCATCAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATTTACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTTTTCGAGAGAGAGAGAGAGAGAGAAAGATTTCCACGTTTTTGGNGCTNANCTNGATNTCCAGATTACGAGGGC] consensusID : consensus_8612#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [CNCTGACGTTTCATCAGTTCTTNNAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATTTACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTTCGAGAGAGAGAGAGAGAGAGAAAGATTTCAACGTTTTTGGTGTTCATATCCTATCAATCCATCGTGCTTACTAACTCGTCCGAAGATACCGATTTCAAACAAGTAGGNCAACTGATGTCTTGTACTACCAAAAAGTTAGTAAAAAGACGTTCCGATTTTGCAGATTTACAGATGGG] [+] EMBL AU162281 [CNCTGACGTTTCATCAGTTCTTNNAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATTTACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTTCGAGAGAGAGAGAGAGAGAGAAAGATTTCAACGTTTTTGGTGTTCATATCCTATCAATCCATCGTGCTTACTAACTCGTCCGAAGATACCGATTTCAAACAAGTAGGNCAACTGATGTCTTGTACTACCAAAAAGTTAGTAAAAAGACGTTCCGATTTTGCAGATTTACAGATGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 GGTTCAAAAGGCCTAGAAGAACGAAGCGGAGCTTAGCTCGCGCATGTGCCAACCTGAACC 60 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 TCCGCTGCGAAACGCCGCGACATCTCGCCGCGCGAGCTAAGCTTAGCTGCAGGTGAGCCA 120 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 TCGGCGATGGCGACGGCGGCGATGACCAAGGTGTTCGTCCTGCTCTTTCTGGTGGCGGCG 180 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 TGCTACCTGCCGGCGCACGCGGCGGCAGCGGAGTGCGACTGCGCGACGGACACGGCGGGG 240 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 CGGGACAAGGCGCAGGCGCTGCGGCTCAAGGTCATCGCCATCTTCTGCATCCTCGCCGGG 300 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 AGCACCGTCGGGGCGGCGCTGCCGTCACTGGGCGGCAGGTTCCCGGCGATCCAGCCGGAG 360 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 ACGGACGTGTTCCTCTCCGTCAAGGCCTTCGCCGGCGGCGTCATCCTCGCCACGGGCCTG 420 consensus_8612#1 -------------------------------------------------------AGCCT 5 consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 GTGCACATCCTCCCCGCGGCCTTCGAGGCGCTCAGCTCGCCGTGCCTCGTCGGCGGCCCG 480 consensus_8612#1 TCGGAGGAGCACACCCACGNCCACGCCCACGGCATGTCCGTCATNTCNGTCGCTCCCCCC 65 consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 TGGAAGCGCTTCCCGTTCGCCGGCATGGTCGCCATGGTCTCCGCCATCGGCACGCTCATC 540 consensus_8612#1 GGNGAGGAGACTTCGTCCGCCACCGGTCATTTCTCAGGTATGTCATANACATCTCCCGCC 125 consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 GTCGACACCGTCGCCACGGGGTACTTCCACCGCACGGACGCCAAGAGGAAGGCCGCGGCC 600 consensus_8612#1 ACCGC--GCCATTCAAGAAACAGAGCTGCGAAAACAAAAAAACGCAACCAAA-------T 176 consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 GTCGCCGACGAGCCAGCCGACGACCTGGAGGCCTCCGACGAGCACAGCCACGGCCACGCC 660 consensus_8612#1 TAAGAAAATTCAATCAAAATTTCTGTTCTTATTTTCTTAATCGATTTTGCTTGTGCGTCC 236 consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 CACGGCATGTCCGTCATGTCCGTCGCTCCCGCCGGCGAGGAAGACCTCGTCCGCCACCGC 720 consensus_8612#1 TTGATGGTGGAGGNNCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCG 296 consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 GTCATCTCTCAGGTGCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCG 780 consensus_8612#1 CTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCAT 356 consensus_8612#2 ----------------------------------------------CNCTGACGTTTCAT 14 consensus_8612#0 CTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCAT 840 * ************ consensus_8612#1 CAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATT 416 consensus_8612#2 CAGTTCTTNNAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATT 74 consensus_8612#0 CAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGCAA---AGTTCCGTGTC 897 ******** ********************************* * * * * consensus_8612#1 TACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTTTTCGAGAGAGAGAGA 476 consensus_8612#2 TACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTT--CGAGAGAGAGAGA 132 consensus_8612#0 AGGTCAGTGGTGACGATGGCGCTCTTCTTCTCCCTGACGACGCCGGCCGGCATCGTCGTC 957 ** * * ** ** * *** * * ** * * consensus_8612#1 GAGAGAGAAAGATTTCCACGTTTTTGGNGCTNAN---CTNGATNTCCA----GATTACGA 529 consensus_8612#2 GAGAGAGAAAGATTTCAACGTTTTTGGTGTTCATATCCTATCAATCCATCGTGCTTACTA 192 consensus_8612#0 GGGATCGGGAT-CTCCTCCGTCTACGACGCGAACAGCCCAACGGCGCTGGTGGTGCAGGG 1016 * ** * * * * *** * * * * * * * * consensus_8612#1 GGGC-------------------------------------------------------- 533 consensus_8612#2 ACTCGTCCGAAGATACCGATTTCAAACAAGTAGGNCAACTGATGTCTTGTACTACCAAAA 252 consensus_8612#0 GCTCCTCGAGGCGGCGGCAGCGGGGATACTCGTCTACATGGCGCTCGTCGACATCCTCGC 1076 * consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 AGTTAGTAAAAAGACGTTCCGATTTTGCAGATTTACAGATGGG----------------- 295 consensus_8612#0 CGAGGACTTCATGAAGACCAAGGTGCAGAGAAGGGGACGCCTGCAGCTCGCCATGAACGT 1136 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 CGCGTTGCTGCTCGGCGCAGGGCTCATGTCCATGATCGCCATCTGGGCGTGATGAGTGAG 1196 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 TGACCATCACGGCCAGCATGCGACGTGCGGCGTTTCAATTTGTTCGGCAGGAATGGCAGG 1256 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 TTTTTGTTCTTAGGCGCGTCTGATCACGCTCGCGCTCTCGCGAAGACCTGAGAATTCGTT 1316 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 CGAGGATCTCAAAAGAGAGACCACTCCGTTGGTTGAAACTGACGAGGAGAGGGGTCTCCC 1376 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 GTGCACGATATGTAGAACAGTTCAGTGACCATGTTACTCTGACTTGACTGACTGACCCGT 1436 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 CATCGTCGTCGTTGCTCTCTTACTGTGCAGAACTTGTAGAGTCGTGCACTTGCGCCTACC 1496 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 ACTGTCCTTCATCTTGGAGGACAATAATGCCAGTGGTGGGCAGAATTCTGGTCTTGATGT 1556 consensus_8612#1 ------------------------------------------------------------ consensus_8612#2 ------------------------------------------------------------ consensus_8612#0 GAATCCGTGATGTACGGGGTAAGACAAGGCTCGTGAATGAGTATACTCCATATCTGTAAA 1616 consensus_8612#1 ------------------------------------------------------ consensus_8612#2 ------------------------------------------------------ consensus_8612#0 GCTCTATCATATCCGAAGGTCATCACGAGTTAGTTAGAGTGTTAAAAAAAAAAA 1670 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||