These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1012 fasta sequence [GACCCTTGAGACTGCTTGTGACGAGCTTAGAAACAGCAGGCTGTTTCTGAAGCTACTTGAAGCTGTCCTGAAGACTGGCAACAGGATGAATGTTGGAACAAATCGCGGCGATGCACACGCGTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTACACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCGAGTGCAAAAAGCTTGGCCTCCAGGTAGTGGCTGGCCTCGGAAACGAGCTCAGCAATGTCAAGAAGGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAAGATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTTCCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGCTCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACCGAGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGTACCTGTAGATTATAGAATGTAAGAAGTTTTTTTGCAAATAATGATTTCTATATATAAGAGGAG] [+] EMBL OSR25171A [GACCCTTGAGACTGCTTGTGACGAGCTTAGAAACAGCAGGCTGTTTCTGAAGCTACTTGAAGCTGTCCTGAAGACTGGCAACAGGATGAATGTTGGAACAAATCGCGGCGATGCACACGCGTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTACACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCGAGTGCAAAAAGCTTGGCCTCCAGGTAGTGGCTGGCCTCGGAAACGAGCTCAGCAATGTCAAGANGGCA ] [+] EMBL AK061290 [ ATGCACACGTGTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTACACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCGAGTGCAAAAAGCTTGGCCTCCAGGTAGTGGCTGGCCTCGGAAACGAGCTCAGCAATGTCAAGAAGGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAAGATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTTCCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGCTCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACCGAGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGTACCTGTAGATTAT ] [-] EMBL CB683002 [ TTACGGGACGAGCTCGAGTGCAAAAAGCTTGGCCTCCAGGTAGTGGCTGGCCTCGGAAACGAGCTCAGCAATGTCAAGAAGGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAAGATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTTCCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGCTCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACCGAGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGTACCTGTAGATTATAGAATGTAAGAAGTTTTTTTGCAAATAATGATTTCTATATATAAGAGGAG] consensusID : consensus_8638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [AGCAATGTCAAGAAGGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAAGATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTTCCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGCTCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACCGAGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGCCCCTCCATCTGAGAGCGGCTGTCAC] [-] EMBL CB683001 [AGCAATGTCAAGAAGGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAAGATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTTCCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGCTCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACCGAGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGCCCCTCCATCTGAGAGCGGCTGTCAC] consensusID : consensus_8638#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [AAATCGCGGNGATGCACACGCGTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTACACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCTTTTTNNAAAAAGCTTGGCCTCCAGGTAGTGGGTGGCCTGGGNGGNGAGCTCAGCAACGCCCCCCCNNGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGNAACTAGAAAAAAAAAATATNAGAAGATCACTGAGGTGTTGCGGT] [+] EMBL CA766563 [AAATCGCGGNGATGCACACGCGTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTACACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCTTTTTNNAAAAAGCTTGGCCTCCAGGTAGTGGGTGGCCTGGGNGGNGAGCTCAGCAACGCCCCCCCNNGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGNAACTAGAAAAAAAAAATATNAGAAGATCACTGAGGTGTTGCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8638#0 GACCCTTGAGACTGCTTGTGACGAGCTTAGAAACAGCAGGCTGTTTCTGAAGCTACTTGA 60 consensus_8638#1 ------------------------------------------------------------ consensus_8638#2 ------------------------------------------------------------ consensus_8638#0 AGCTGTCCTGAAGACTGGCAACAGGATGAATGTTGGAACAAATCGCGGCGATGCACACGC 120 consensus_8638#1 ------------------------------------------------------------ consensus_8638#2 ------------------------------------------------------------ consensus_8638#0 GTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTAC 180 consensus_8638#1 ------------------------------------------------------------ consensus_8638#2 ------------------------------------------------------------ consensus_8638#0 ACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAG 240 consensus_8638#1 ------------------------------------------------------------ consensus_8638#2 ------------------------------------------------------------ consensus_8638#0 CAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCGAGTGCAAAAA 300 consensus_8638#1 ------------------------------------------------------------ consensus_8638#2 ------------------------------------------------------------ consensus_8638#0 GCTTGGCCTCCAGGTAGTGGCTGGCCTCGGAAACGAGCTCAGCAATGTCAAGAAGGCAGC 360 consensus_8638#1 ----------------------------------------AGCAATGTCAAGAAGGCAGC 20 consensus_8638#2 ------------------------------------------------------------ consensus_8638#0 TGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAA 420 consensus_8638#1 TGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAA 80 consensus_8638#2 ------------------------------------------------------------ consensus_8638#0 GATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTT 480 consensus_8638#1 GATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTT 140 consensus_8638#2 ----------------------------------AAATC--GCGGNGATGCACACGCGTT 24 ** ** * * ****** *** consensus_8638#0 CCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGC 540 consensus_8638#1 CCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGC 200 consensus_8638#2 CAA--GCTTGATAC----TCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGAC 78 * * * ** * * * ** ** ***** * * ** * ** * consensus_8638#0 TCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCA-CCGAGTACTTCCATGGTGACT 599 consensus_8638#1 TCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCA-CCGAGTACTTCCATGGTGACT 259 consensus_8638#2 T----ACACTTTTGCATTTTG--TCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCT 132 * * * **** * * * *** ******* * **** * ** consensus_8638#0 CTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTT-CATGGTGGTCA-GGGATTTCCTCTC 657 consensus_8638#1 CTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTT-CATGGTGGTCA-GGGATTTCCTCTC 317 consensus_8638#2 CTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCT- 191 ** * ** *** * * ** ** * * **** **** consensus_8638#0 AGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTC 717 consensus_8638#1 AGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTC 377 consensus_8638#2 --TTTTNNAAAAAGCTTGGCCTCCAGGTAGTGGG-----TGGCCTG--GGNGGNGAGCTC 242 ** * * *** ** ** * * ** ** ** * * ***** consensus_8638#0 GGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCA 777 consensus_8638#1 GGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCA 437 consensus_8638#2 AGCAACGCCCCCCCNNGCAGCTGCCA--TGGACTCCGACGTGCTAAGCAGCTATGTCTCG 300 * * ** * * * * ** * * * * * * * ** consensus_8638#0 TGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTG 837 consensus_8638#1 TGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTG 497 consensus_8638#2 NAACTAGAAAAAAAAAATATNAGAAGATCA---CTGAGGTGTTGCGGT------------ 345 * ** * *** * *** *** * * ** * * * consensus_8638#0 ATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGG 897 consensus_8638#1 ATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGG 557 consensus_8638#2 ------------------------------------------------------------ consensus_8638#0 CAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGTACCTGTAG 957 consensus_8638#1 CAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGCCCCTCCAT 617 consensus_8638#2 ------------------------------------------------------------ consensus_8638#0 ATTATAGAATGTAAGAAGTTTTTTTGCAAATAATGATTTCTATATATAAGAGGAG 1012 consensus_8638#1 CTGAGAGCGGCTGTCAC-------------------------------------- 634 consensus_8638#2 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||