These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1699 fasta sequence [CATCCCCCCAAGCCCAAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCGTCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCCGCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCGCCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGGTGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCAAGGAGCTCTGCGAGGAGTTGCGTGTTTCAGGTGGTATTATCCTTGCGCCGGAAGGGATCAATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAGACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTATCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGTGGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCATGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTGACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTAAGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATCAGTTTCAATTGGCTGAATCTGACAGTCAACTGTGCTCAGAAAATAATGACAATACAATTGGCAGACAGTCGGAAGATGTGAATTCAAGCAAACCCAAAGAGTTACCACGAGTTGCTATGTATTGCACTGGTGGCATAAGATGTGAAAAGGCATCAAGTTTCCTCCTTAGC-AGGGCTTTAAAGAGGTTTATCACTTGGAGGGTGGGATATTGAAGTACCTAGAGGAAATCCCCAAGGCAGAAAGCTTGTGGGAGGGTGAATGCTTTGTGTTTGACAAACGTGTCTCAGTGGAGCACGGATTAGCCCAAGGAACCCACAAACTTTGTTATGGATGTAAGAAACCAGTTAGTGATGAAGACATGGAATCTCCTGAGTGGGAGTATGGTGTATCATGTCCATATTGCTTTGCAACCAAATCCGAGGAGGAGAAGGAAAGGGCAAGGGCACGGCAGAGACAGTTTGAGACATGGGGAGTTATTGGCGGCCCTGATAAAGGAAGAAGTCCAAAAAGGCTGGAAGCTAATCACACAGCTGAAGAGCCCAAACAGTTGTCGAGCTCAGTCTAACTCAAACTGGGTAACTGAAACTTGTTCCATTACCACTTCTGATTGATTGACGTTTTGCTGACGAAGCGAGGGATCCTTTTGTATCAGCCGCGTCTTCTTTTGCACCTTTCTTGTAGTCTTCCAGATTATGTCTTGGTCCCTTATGTAGCCTTACGATAAAGCTTGAAGTTGTTTTTCGGTAGCACCGTTGTTTGTTCCATCTGGTT-CTAATTGTAAAAACAGCAGTTACTCTTATGAGTTGCAGCAGTTTCATGAATAATTATGCGCTGAGCTAAAGAGGCACCGAGATATCGG] [+] EMBL AK109472 [CATCCCCCCAAGCCCAAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCGTCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCCGCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCGCCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGGTGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCAAGGAGCTCTGCGAGGAGTTGCGTGTTTCAGGTGGTATTATCCTTGCGCCGGAAGGGATCAATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAGACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTATCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGTGGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCATGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTGACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTAAGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATCAGTTTCAATTGGCTGAATCTGACAGTCAACTGTGCTCAGAAAATAATGACAATACAATTGGCAGACAGTCGGAAGATGTGAATTCAAGCAAACCCAAAGAGTTACCACGAGTTGCTATGTATTGCACTGGTGGCATAAGATGTGAAAAGGCATCAAGTTTCCTCCTTAGC AGGGCTTTAAAGAGGTTTATCACTTGGAGGGTGGGATATTGAAGTACCTAGAGGAAATCCCCAAGGCAGAAAGCTTGTGGGAGGGTGAATGCTTTGTGTTTGACAAACGTGTCTCAGTGGAGCACGGATTAGCCCAAGGAACCCACAAACTTTGTTATGGATGTAAGAAACCAGTTAGTGATGAAGACATGGAATCTCCTGAGTGGGAGTATGGTGTATCATGTCCATATTGCTTTGCAACCAAATCCGAGGAGGAGAAGGAAAGGGCAAGGGCACGGCAGAGACAGTTTGAGACATGGGGAGTTATTGGCGGCCCTGATAAAGGAAGAAGTCCAAAAAGGCTGGAAGCTAATCACACAGCTGAAGAGCCCAAACAGTTGTCGAGCTCAGTCTAACTCAAACTGGGTAACTGAAACTTGTTCCATTACCACTTCTGATTGATTGACGTTTTGCTGACGAAGCGAGGGATCCTTTTGTATCAGCCGCGTCTTCTTTTGCACCTTTCTTGTAGTCTTCCAGATTATGTCTTGGTCCCTTATGTAGCCTTACGATAAAGCTTGAAGTTGTTTTTCGGTAGCACCGTTGTTTGTTCCATCTGGTT CTAATTGTAAAAACAGCAGTTACTCTTATGAGTTGCAGCAGTTTCATGAATAATTATGCGCTGAGCTAAAGAGGCACCGAGATATCG ] [+] EMBL CB636888 [ GCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCGTCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCCGCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCGCCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGGTGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCAAGGAGCTCTGCGAGGAGTTGCGTGTTTCAAGTGGTATTATCCTTGCGCCGGAAGGGATCAATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAGACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTATCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGTGGGATCAT ] [-] EMBL CB651321 [ ATTGGCTGAATCTGACAGTCAACTGTGCTCAGAAAATAATGACAATACAATTGGCAGACAGTCGGAAGATGTGAATTCAAGCAAACCCAAAGAGTTACCACGAGTTGCTATGTATTGCACTGGTGGCATAAGATGTGAAAAGGCATCAAGTTTCCTCCTTAGCAAGGGCTTTAAAGAGGTTTATCACTTGGAGGGTGGGATATTGAAGTACCTAGAGGAAATCCCCAAGGCAGAAAGCTTGTGGGAGGGTGAATGCTTTGTGTTTGACAAACGTGTCTCAGTGGAGCACGGATTAGCCCAAGGAACCCACAAACTTTGTTATGGATGTAAGAAACCAGTTAGTGATGAAGACATGGAATCTCCTGAGTGGGAGTATGGTGTATCATGTCCATATTGCTTTGCAACCAAATCCGAGGAGGAGAAGGAAAGGGCAAGGGCACGGCAGAGACAGTTTGAGACATGGGGAGTTATTGGCGGCCCTGATAAAGGAAGAAGTCCAAAAAGGCTGGAAGCTAATCACACAGCTGAAGAGCCCAAACAGTTGTCGAGCTCAGTCTAACTCAAACTGGGTAACTGAAACTTGTTCCATTACCACTTCTGATTGATTGACGTTTTGCTGACGAAGCGAGGGATCCTTTTGTATCAGCCGCGTCTTCTTTTGCACCTTTCTTGTAGTCTTCCAGATTATGTCTTGGTCCCTTATGTAGCCTTACGATAAAGCTTGAAGTTGTTTTTCGGTAGCACCGTTGTTTGTTCCATCTGGTT CTAATTGTAAAAACAGCAGTTACTCTTATGAGTTGCAGCAGTTTCATGAATAATTATGCGCTGAGATAAAGAGGCACCGAGATATCGG] [-] EMBL CB636889 [ AGGTACCCACAAATTTTGTTATGGATGTAAGAAACCAGTTAGTGATGAAGACATGGAATCTCCTGAGTGGGAGTATGGTGTATCATGTCCATATTGCTTTGCAACCAAATCCGAGGAGGAGAAGGAAAGGGCAAGGGCACGGCAGAGACAGTTTGAGACATGGGGAGTTATTGGCGGCCCTGATAAAGGAAGAAGTCCAAAAAGGTTGGAAGTTAATCACACAGCTGAAGAGCCCAAACAGTTGTCGAGCTCAGTCTAACTCAAACTGGGTAACTGAAACTTGTTCCATTACCACTTCTGATTGATTGACGTTTTGCTGACGAAGCGAGGGATCCTTTTGTATCAGCCGCGTATTATTTTGCACCTTTCTTGTAGTCTTCCAGATTATGTCTTGGTCCCTTATGTAGCCTTACGATAAAGCTTGAAGTTGTTTTTCGGTAGCACCGTTGTTTGTTCCATCTGGTTGCTAATTGTAAAAACAGCAGTTA TCTTATGAG TGCA ] consensusID : consensus_8639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence [AAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCGTCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCCGCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCGCCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGGTGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCAAGGAGCTCTGCGAGGAGTTGGTGGTATTATCCTTGCGCCGGAAGGGATCAATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAGACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTATCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGTGGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCATGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTGACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTAAGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATCAGTTTCAATTG] [+] EMBL CB651320 [AAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCGTCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCCGCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCGCCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGGTGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCAAGGAGCTCTGCGAGGAGTTGGTGGTATTATCCTTGCGCCGGAAGGGATCAATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAGACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTATCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGTGGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCATGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTGACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTAAGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATCAGTTTCAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8639#0 CATCCCCCCAAGCCCAAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCG 60 consensus_8639#1 ---------------AAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCG 45 ********************************************* consensus_8639#0 CCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCG 120 consensus_8639#1 CCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCG 105 ************************************************************ consensus_8639#0 TCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCC 180 consensus_8639#1 TCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCC 165 ************************************************************ consensus_8639#0 GCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCG 240 consensus_8639#1 GCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCG 225 ************************************************************ consensus_8639#0 CCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGG 300 consensus_8639#1 CCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGG 285 ************************************************************ consensus_8639#0 TGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCA 360 consensus_8639#1 TGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCA 345 ************************************************************ consensus_8639#0 AGGAGCTCTGCGAGGAGTTGCGTGTTTCAGGTGGTATTATCCTTGCGCCGGAAGGGATCA 420 consensus_8639#1 AGGAGCTCTGCGAGGAGTTG----------GTGGTATTATCCTTGCGCCGGAAGGGATCA 395 ******************** ****************************** consensus_8639#0 ATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAG 480 consensus_8639#1 ATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAG 455 ************************************************************ consensus_8639#0 ACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTA 540 consensus_8639#1 ACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTA 515 ************************************************************ consensus_8639#0 TCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGT 600 consensus_8639#1 TCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGT 575 ************************************************************ consensus_8639#0 GGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCA 660 consensus_8639#1 GGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCA 635 ************************************************************ consensus_8639#0 TGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTG 720 consensus_8639#1 TGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTG 695 ************************************************************ consensus_8639#0 ACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTA 780 consensus_8639#1 ACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTA 755 ************************************************************ consensus_8639#0 AGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATC 840 consensus_8639#1 AGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATC 815 ************************************************************ consensus_8639#0 AGTTTCAATTGGCTGAATCTGACAGTCAACTGTGCTCAGAAAATAATGACAATACAATTG 900 consensus_8639#1 AGTTTCAATTG------------------------------------------------- 826 *********** consensus_8639#0 GCAGACAGTCGGAAGATGTGAATTCAAGCAAACCCAAAGAGTTACCACGAGTTGCTATGT 960 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 ATTGCACTGGTGGCATAAGATGTGAAAAGGCATCAAGTTTCCTCCTTAGCAGGGCTTTAA 1020 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 AGAGGTTTATCACTTGGAGGGTGGGATATTGAAGTACCTAGAGGAAATCCCCAAGGCAGA 1080 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 AAGCTTGTGGGAGGGTGAATGCTTTGTGTTTGACAAACGTGTCTCAGTGGAGCACGGATT 1140 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 AGCCCAAGGAACCCACAAACTTTGTTATGGATGTAAGAAACCAGTTAGTGATGAAGACAT 1200 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 GGAATCTCCTGAGTGGGAGTATGGTGTATCATGTCCATATTGCTTTGCAACCAAATCCGA 1260 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 GGAGGAGAAGGAAAGGGCAAGGGCACGGCAGAGACAGTTTGAGACATGGGGAGTTATTGG 1320 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 CGGCCCTGATAAAGGAAGAAGTCCAAAAAGGCTGGAAGCTAATCACACAGCTGAAGAGCC 1380 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 CAAACAGTTGTCGAGCTCAGTCTAACTCAAACTGGGTAACTGAAACTTGTTCCATTACCA 1440 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 CTTCTGATTGATTGACGTTTTGCTGACGAAGCGAGGGATCCTTTTGTATCAGCCGCGTCT 1500 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 TCTTTTGCACCTTTCTTGTAGTCTTCCAGATTATGTCTTGGTCCCTTATGTAGCCTTACG 1560 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 ATAAAGCTTGAAGTTGTTTTTCGGTAGCACCGTTGTTTGTTCCATCTGGTTCTAATTGTA 1620 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 AAAACAGCAGTTACTCTTATGAGTTGCAGCAGTTTCATGAATAATTATGCGCTGAGCTAA 1680 consensus_8639#1 ------------------------------------------------------------ consensus_8639#0 AGAGGCACCGAGATATCGG 1699 consensus_8639#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||