These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 760 fasta sequence [GACAGCCCTCCGGAAAAGAGCCAAGACAACCAAAACTAGTGTTCCGACCCCCTTTGAAATCATAATGAAAGGGTTGGAAGGAACCTCTGGCAAGCAGCTGGTAAAGGAGATATGCCCAACATGTGGAGATCATGACCCCAAGGAAGATACATGGTTAATGTTTCCAGGATCAGATATCTTTGCTCGTGTTCCATTTCATGTGGCCCACACTGTTCTAGACAAAGATCAAGAACGACTAGACTATGACACCAAGAAGCTACAGAGCTTTGTGAAGGAGAAATCGTTTGTGATATCAGAGAAAGGTGCCCTTGCAGACAGAATCAGCCCCGGCATCGTGAAATCCCTCGTCAGCCTTACAGATAAACCCAAGTAGGCACAAGAGAGAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGGCAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGTGCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTGTTATGAATTGTATGACTAGGTTAGGCTATATGAC-AG-TACTTCATTTCAGGC-GC-A-GTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCTTACAAAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTTAAACCT] [+] EMBL AK059106 [GACAGCCCTCCGGAAAAGAGCCAAGACAACCAAAACTAGTGTTCCGACCCCCTTTGAAATCATAATGAAAGGGTTGGAAGGAACCTCTGGCAAGCAGCTGGTAAAGGAGATATGCCCAACATGTGGAGATCATGACCCCAAGGAAGATACATGGTTAATGTTTCCAGGATCAGATATCTTTGCTCGTGTTCCATTTCATGTGGCCCACACTGTTCTAGACAAAGATCAAGAACGACTAGACTATGACACCAAGAAGCTACAGAGCTTTGTGAAGGAGAAATCGTTTGTGATATCAGAGAAAGGTGCCCTTGCAGACAGAATCAGCCCCGGCATCGTGAAATCCCTCGTCAGCCTTACAGATAAACCCAAGTAGGCACAAGAGAGAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGGCAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGTGCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTGTTATGAATTGTATGACTAGGTTAGGCTATATGAC AG TACTTCATTTCAGGC GC A GTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCTTACAAAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTTAAACCT] [-] EMBL AA750386 [ CATTCTGTGACATTAGCTAGGCNGCTGTTGATTAGTTTTTAGGCGNCCTCTAATCCTATATTGTTATGAATTGTATGACTAGGCCAGGCTATATGACTAGATACTTCATTTCAGGCTGCTATGTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTCAAAATTCAGGTCTTACAAAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTTAA ] consensusID : consensus_8648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 676 fasta sequence [GGCGGAGTCATGCGCCCAAGGAAGACGCATGGGTCAAGGGTCGCAGGGTACGGGGGTGTGGGGTAGGGTTCGTGGAGATGGATACCAGCCTGTTTTAGACAAAAGCGAAGGGCCACGGGCTGGGACGGCAGGAACGCACAAAACTTCGTGAAGGACAGATCGTTTGTGATATCAGAGAAAGGTGGCCTTGCAGACAGAATCAGCCCTGGCATCGTGAAATCCCTCGTCAGCGTTACAGATAAGCACAAGTAGGCGCCAGAGATAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGACAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGTGCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTGTTATGAATTGTATGACTAGGTTAGGCTATATGACAGTACT-TCATTTCAGGCGCAGTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCATACAAAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTAAACCTTTGACACCGCAATATTTGATGTTGCCCCAAAAAAAAAA] [-] EMBL CA762612 [GGCGGAGTCATGCGCCCAAGGAAGACGCATGGGTCAAGGGTCGCAGGGTACGGGGGTGTGGGGTAGGGTTCGTGGAGATGGATACCAGCCTGTTTTAGACAAAAGCGAAGGGCCACGGGCTGGGACGGCAGGAACGCACAAAACTTCGTGAAGGACAGATCGTTTGTGATATCAGAGAAAGGTGGCCTTGCAGACAGAATCAGCCCTGGCATCGTGAAATCCCTCGTCAGCGTTACAGATAAGCACAAGTAGGCGCCAGAGATAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGACAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGTGCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTGTTATGAATTGTATGACTAGGTTAGGCTATATGACAGTACT TCATTTCAGGCGCAGTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCATACAAAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTAAACCTTTGACACCGCAATATTTGATGTTGCCCCAAAAAAAAAA] [+] EMBL BI801022 [ ACAAGAAAGCTGTGCATCCACTGAAACGAAGCATCC TTGGGCTCACCTGTAACCTGTTGTGCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTGTTATGAATTGTATGACTAGGTTAGGCTATATGACAGTACT TCATTTCAGGCGCAGTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCATAC AAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTAAAaa ] [+] EMBL AA750387 [ ACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTG TGATTAGTTTTTAGGCAACCTCTAATCCTATA TG TATGAA TG ATGACTAGG TAGGC ATTTGAC G ACTATCAgc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8648#0 GACAGCCCTCCGGAAAAGAGCCAAGACAACCAAAACTAGTGTTCCGACCCCCTTTGAAAT 60 consensus_8648#1 ------------------------------------------------------------ consensus_8648#0 CATAATGAAAGGGTTGGAAGGAACCTCTGGCAAGCAGCTGGTAAAGGAGATATGCCCAAC 120 consensus_8648#1 ------------------------------------------------------------ consensus_8648#0 ATGTGGAGATCATGACCCCAAGGAAGATACATGG-TTAATGTTTCCAGGAT-CAGATATC 178 consensus_8648#1 -GGCGGAG-TCATGCGCCCAAGGAAGACGCATGGGTCAAGGGTCGCAGGGTACGGGGGTG 58 * **** ***** *********** ***** * ** * * **** * * * * consensus_8648#0 TTTGCTCGTGTTCCATTTCATGTGGCCCACACTGTTCTAGACAAAGATCAAGAACGACTA 238 consensus_8648#1 TGGGGTAGGGTTCGTGGAGATGGATACCAGCCTGTTTTAGACAAAAGCGAAGGGCCAC-G 117 * * * * **** *** *** ***** ******** *** * ** consensus_8648#0 GACTATGACACCAAGAAGCTACAGAGCTTTGTGAAGGAGAAATCGTTTGTGATATCAGAG 298 consensus_8648#1 GGCTGGGACGGCAGGAACGCACAAAACTTCGTGAAGGACAGATCGTTTGTGATATCAGAG 177 * ** *** ** *** *** * *** ******** * ******************* consensus_8648#0 AAAGGTGCCCTTGCAGACAGAATCAGCCCCGGCATCGTGAAATCCCTCGTCAGCCTTACA 358 consensus_8648#1 AAAGGTGGCCTTGCAGACAGAATCAGCCCTGGCATCGTGAAATCCCTCGTCAGCGTTACA 237 ******* ********************* ************************ ***** consensus_8648#0 GATAAACCCAAGTAGGCACAAGAGAGAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGG 418 consensus_8648#1 GATAAGCACAAGTAGGCGCCAGAGATAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGA 297 ***** * ********* * ***** ********************************* consensus_8648#0 CAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGT 478 consensus_8648#1 CAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGT 357 ************************************************************ consensus_8648#0 GCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTC 538 consensus_8648#1 GCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTC 417 ************************************************************ consensus_8648#0 ATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATAT 598 consensus_8648#1 ATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATAT 477 ************************************************************ consensus_8648#0 TGTTATGAATTGTATGACTAGGTTAGGCTATATGACAGTACTTCATTTCAGGCGCAGTTT 658 consensus_8648#1 TGTTATGAATTGTATGACTAGGTTAGGCTATATGACAGTACTTCATTTCAGGCGCAGTTT 537 ************************************************************ consensus_8648#0 TCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCTTACAA 718 consensus_8648#1 TCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCATACAA 597 ****************************************************** ***** consensus_8648#0 AAGTTTGACCAGATGATAATACCCGGGGTTTTTTTTAAACCT------------------ 760 consensus_8648#1 AAGTTTGACCAGATGATAATACCCGGGGTTTTTTTAAACCTTTGACACCGCAATATTTGA 657 *********************************** ** * * consensus_8648#0 ------------------- consensus_8648#1 TGTTGCCCCAAAAAAAAAA 676 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||