These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1217 fasta sequence [ATCGCCCCCGTCACCCTCTCTGCGCTGCTGCTGCTGCTTCCGATGGCGGCGCCTCCGCTTCCCCGCGCCCCCGTCTCCTCCTCCGCCGCCGCCGCGTCGCCGGGGGGCCGCGCTCTCCTCCTCCTCCGCGTCGGCGGAGGAGGTTCCGGAAGATGCGCTGGCGTGGCGGCGGCGGCGGCACCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACGCCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGACAGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAGGGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTATAGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTGCATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGGCCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTGCTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAGGTCCTCAGGAAGCGATTCTCGCAGTCTGGTATTGAGGAGAAGGCCAGTCGCAACAAATCTTAGGATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATCGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTCTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCTTTAATTGTTCTCCAATAAGACACTGAGCAAATACATGTCTGGAATTTGCAGTGCTGTTCTTGCTGTCGCCAATAAAATAATAAAATCAGCTCATAAGTAAAGCATCTTCCTGATTTGATGAAAAAAA] [+] EMBL AK061002 [ATCGCCCCCGTCACCCTCTCTGCGCTGCTGCTGCTGCTTCCGATGGCGGCGCCTCCGCTTCCCCGCGCCCCCGTCTCCTCCTCCGCCGCCGCCGCGTCGCCGGGGGGCCGCGCTCTCCTCCTCCTCCGCGTCGGCGGAGGAGGTTCCGGAAGATGCGCTGGCGTGGCGGCGGCGGCGGCACCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACGCCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGACAGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAGGGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTATAGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTGCATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGGCCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTGCTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAGGTCCTCAGGAAGCGATTCTCGCAGTCTGGTATTGAGGAGAAGGCCAGTCGCAACAAATCTTAGGATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATCGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTCTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCTTTAATTGTTCTCCAATAAGACACTGAGCAAATACATGTCTGGAATTTGCAGTGCTGTTCTTGCTGTCGCCAATAAAATAATAAAATCAGCTCA ] [+] EMBL AK099335 [ TTCCGATGGCGGCGCCTCCGCTTCCCCGCGCCCCCGTCTCCTCCTCCGCCGCCGCCGCGTCGCCGGGGGGCCGCGCTCTCCTCCTCCTCCGCGTCGGCGGAGGAGGTTCCGGAAGATGCGCTGGCGTGGCGGCGGCGGCGGCACCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACGCCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGACAGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAGGG TCTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTATAGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTGCATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGGCCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTGCTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAGGTCCTCAGGAAGCGATTCTCGCAGTCTGGTATTGAGGAGAAGGCCAGTCGCAACAAATCTTAGGATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATCGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTCTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCTTTAATTGTTCTCCAATAAGACACTGAGCAAATACATGTCTGGAATTTGCAGTGCTGTTCTTGCTGTCGCCAATAAAATAATAAAATCA ] [+] EMBL CF307732 [ ACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATCGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTCTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCTTTAATTGTTCTCCAATAAGACACTGAGCAAATACATGTCTGGAATTTGCAGTGCTGTTCTTGCTGTCGCCAATAAAATAATAAAATCAGCTCATAAGTAAAGCATCTTCCTGATTTGATGAAAAAAA] consensusID : consensus_8663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1010 fasta sequence [GCACCGGGTTGGCGGCGGCACCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACGCCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGACAGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAGGGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTATAGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTGCATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGGCCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTGCTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAGGTCCTCAGGAAGCGATTCTCCCAGTTTGGTATTGAGGAGAAGGCCAGTCGCAACAAATTTTAGCATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATGGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTTTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCCTTAATTGTTTTCCAATAAGACCCTGAGCAAATACATGTTTGGAATTTGCAGTGCTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BP184582 [GCACCGGGTTGGCGGCGGCACCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACGCCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGACAGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAGGGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTATAGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTGCATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGGCCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTGCTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAA ] [-] EMBL CA763228 [ acaAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTTTCAACTCTGTACTCCCTTGAAGATCCAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGCCAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACCCTGCTTGAGAATGAGGCCGAGAGCCGCCCAATCAGTGAGATGGGTGATTTGCTATACCCCGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAGGTCCTCAGGAAGCGATTCTCCCAGTTTGGTATTGAGGAGAAGGCCAGTCGCAACAAATTTTAGCATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATGGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTTTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCCTTAATTGTTTTCCAATAAGACCCTGAGCAAATACATGTTTGGAATTTGCAGTGCTAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8663#0 ATCGCCCCCGTCACCCTCTCTGCGCTGCTGCTGCTGCTTCCGATGGCGGCGCCTCCGCTT 60 consensus_8663#1 ------------------------------------------------------------ consensus_8663#0 CCCCGCGCCCCCGTCTCCTCCTCCGCCGCCGCCGCGTCGCCGGGGGGCCGCGCTCTCCTC 120 consensus_8663#1 ------------------------------------------------------------ consensus_8663#0 CTCCTCCGCGTCGGCGGAGGAGGTTCCGGAAGATGCGCTGGCGTGGCGGCGGCGGCGGCA 180 consensus_8663#1 ----------------------------------------GCACCGGGTTGGCGGCGGCA 20 ** * * ********** consensus_8663#0 CCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACG 240 consensus_8663#1 CCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACG 80 ************************************************************ consensus_8663#0 CCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGAC 300 consensus_8663#1 CCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGAC 140 ************************************************************ consensus_8663#0 AGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAG 360 consensus_8663#1 AGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAG 200 ************************************************************ consensus_8663#0 GGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTAT 420 consensus_8663#1 GGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTAT 260 ************************************************************ consensus_8663#0 AGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTG 480 consensus_8663#1 AGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTG 320 ************************************************************ consensus_8663#0 CATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGG 540 consensus_8663#1 CATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGG 380 ************************************************************ consensus_8663#0 CCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAA 600 consensus_8663#1 CCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAA 440 ************************************************************ consensus_8663#0 GGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACA 660 consensus_8663#1 GGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACA 500 ************************************************************ consensus_8663#0 ATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAA 720 consensus_8663#1 ATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAA 560 ************************************************************ consensus_8663#0 AAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTA 780 consensus_8663#1 AAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTA 620 ************************************************************ consensus_8663#0 AACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTG 840 consensus_8663#1 AACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTG 680 ************************************************************ consensus_8663#0 CTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAG 900 consensus_8663#1 CTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAG 740 ************************************************************ consensus_8663#0 GTCCTCAGGAAGCGATTCTCGCAGTCTGGTATTGAGGAGAAGGCCAGTCGCAACAAATCT 960 consensus_8663#1 GTCCTCAGGAAGCGATTCTCCCAGTTTGGTATTGAGGAGAAGGCCAGTCGCAACAAATTT 800 ******************** **** ******************************** * consensus_8663#0 TAGGATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATCGGCATTGG 1020 consensus_8663#1 TAGCATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATGGGCATTGG 860 *** *********************************************** ******** consensus_8663#0 TGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTCTTAATTAGACCGAAGGTTGTGAATTG 1080 consensus_8663#1 TGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTTTTAATTAGACCGAAGGTTGTGAATTG 920 ********************************* ************************** consensus_8663#0 TGATTATGCTTTAATTGTTCTCCAATAAGACACTGAGCAAATACATGTCTGGAATTTGCA 1140 consensus_8663#1 TGATTATGCCTTAATTGTTTTCCAATAAGACCCTGAGCAAATACATGTTTGGAATTTGCA 980 ********* ********* *********** **************** *********** consensus_8663#0 GTGCTGTTCTTGCTGTCGCCAATAAAATAATAAAATCAGCTCATAAGTAAAGCATCTTCC 1200 consensus_8663#1 GTGCTA-----AAAAAAAAAAAAAAAAAAAAAAAA------------------------- 1010 ***** ** **** ** **** consensus_8663#0 TGATTTGATGAAAAAAA 1217 consensus_8663#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||