These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 549 fasta sequence [AACCCCTCCAGTACCGGTCCCGATTTCCCGGTCGACCCACGCGTCCCTGACACAAAAGTTTGTCAACACAACCCCCCTGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTCCCACCGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTGAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCAACGGCGGCGCCGGCGCCAAGGGAAAGAGCGGCGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCTGTTCTCACCTCACGTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTAC-AATTTATGTAAAAAAAAAA] [+] EMBL BI795910 [AACCCCTCCAGTACCGGTCCCGATTTCCCGGTCGACCCACGCGTCCCTGACACAAAAGTTTGTCAACACAACCCCCCTGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTCCCACCGTCTCGTCCCCCACGCTCGTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCTGTTGTGAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAA GCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCAACGGCGGCGCCGGCGCCAAGGGAAAGAGCGGCGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCTGTTCTCACCTCACGTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTAC AATTTATGTAAAAAAAAAA] [+] EMBL C73202 [ cgCTGCTTCTAGATACTTCTTCCTCCATTTNTTTCCTCCTTGCCACCGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGGGNGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTNAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCAACGGCGGCG CNGCGCCAAGGGAAAGAGCGGCGGGAAGAAGTAGGCAT ] [+] EMBL AU172651 [ CGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTGAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCAACGGCGGCGCCGGCGCCAAGGGAAAGAGCGGCGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCTGTTCTCACCTCACGTCTGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAAATTTATGTAAAAA ] consensusID : consensus_8697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [TCACGACACAAAAGTTTGTCAACAGCAGCCGCCCGCTGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTGCCACCGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTGAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCATATGCCGGCATTTGATCTGTTCTCACCTCACGTCTGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAAATTTATGTAGA] [+] EMBL AK063349 [TCACGACACAAAAGTTTGTCAACAGCAGCCGCCCGCTGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTGCCACCGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTGAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCATATGCCGGCATTTGATCTGTTCTCACCTCACGTCTGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAAATTTATGTAGA] consensusID : consensus_8697#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GCTCTGTGCGACCTCTTATAATTTCACCGTCTATGACTCGCGGCGACCAGAGGGACCGGGACAGCAGAGGGCGCAGGCTGCGTGAAGCCTGTTGTGAAGGGGCAGCTGACGACGGGTCTCACGCCGGAGCAGCACCAGCGAGAGGGACGCCAAGGCAGCTGCAGGAGAAGCAGCCCAGGAAGCAGGCACAGCCCACCGGGCAGGCGCAACGCGGCACCAGGCACCAAGGGAAAGAGCGCGCAGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCGTGTTCTCACCTCACAGTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAAATTTATGTAGATTGTGAAACAAAAAA] [+] EMBL BI796651 [GCTCTGTGCGACCTCTTATAATTTCACCGTCTATGACTCGCGGCGACCAGAGGGACCGGGACAGCAGAGGGCGCAGGCTGCGTGAAGCCTGTTGTGAAGGGGCAGCTGACGACGGGTCTCACGCCGGAGCAGCACCAGCGAGAGGGACGCCAAGGCAGCTGCAGGAGAAGCAGCCCAGGAAGCAGGCACAGCCCACCGGGCAGGCGCAACGCGGCACCAGGCACCAAGGGAAAGAGCGCGCAGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCGTGTTCTCACCTCACAGTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAAATTTATGTAGATTGTGAAACAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8697#0 AACCCCTCCAGTACCGGTCCCGATTTCCCGGTCGACCCACGCGTCCCTGACACAAAAGTT 60 consensus_8697#1 --------------------------------------------TCACGACACAAAAGTT 16 consensus_8697#2 ------------------------------------------------------------ consensus_8697#0 TGTCAACA-CAACCCCCC--TGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTCC 117 consensus_8697#1 TGTCAACAGCAGCCGCCCGCTGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTGC 76 consensus_8697#2 ------------------------------------------------------------ consensus_8697#0 CACCGTCTCGTCCCCCACGCTCT-TGCGACCTCTTATAATTTCACCG-CTATGACTCGCG 175 consensus_8697#1 CACCGTCTCGTCCCCCACGCTCT-TGCGACCTCTTATAATTTCACCG-CTATGACTCGCG 134 consensus_8697#2 ------------------GCTCTGTGCGACCTCTTATAATTTCACCGTCTATGACTCGCG 42 ***** *********************** ************ consensus_8697#0 GCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGC-GCG-GAAGCCGGTTGTGAAGGG 233 consensus_8697#1 GCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGC-GCG-GAAGCCGGTTGTGAAGGG 192 consensus_8697#2 GCGACCAGAGGGACCGGGACAG-CAGAGGGCGCAGGCTGCGTGAAGCCTGTTGTGAAGGG 101 ************* ******** ************** *** ****** *********** consensus_8697#0 GCG--CGACGACGGG-CTCACGCCGGAGCAGCGCC-GCGAGAGGGACGCCAAGGC-GCTG 288 consensus_8697#1 GCG--CGACGACGGG-CTCACGCCGGAGCAGCGCC-GCGAGAGGGACGCCAAGGC-GCTG 247 consensus_8697#2 GCAGCTGACGACGGGTCTCACGCCGGAGCAGCACCAGCGAGAGGGACGCCAAGGCAGCTG 161 ** ********* **************** ** ******************* **** consensus_8697#0 CAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGG-GCGGCAACGGCGGCGC 347 consensus_8697#1 CAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGG-GCGGCA---------- 296 consensus_8697#2 CAGGAGAAGCAGCCCAGGAAGCAGGCACAGCCCACCGGGCAGGCGCAACG-CGGCACCAG 220 ********* * ******** *** *** ************ ** * consensus_8697#0 CGGCGCCAAGGGAAAGAGCGGCGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATC 407 consensus_8697#1 -------------------------------------------TATGCCGGCATTTGATC 313 consensus_8697#2 GCACCAAGGGAAAGAGCGCGCAGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATC 280 ***************** consensus_8697#0 -TGTTCTCACCTCAC-GTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGC 465 consensus_8697#1 -TGTTCTCACCTCAC-GTCTGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGC 371 consensus_8697#2 GTGTTCTCACCTCACAGTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGC 340 ************** *** **************************************** consensus_8697#0 TCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGC 525 consensus_8697#1 TCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGC 431 consensus_8697#2 TCCTGATCCTGCCCATGTTG-CAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGC 399 ******************** *************************************** consensus_8697#0 ATTACAA-TTTATGTAAAAAAAAAA-------- 549 consensus_8697#1 ATTACAAATTTATGTAGA--------------- 449 consensus_8697#2 ATTACAAATTTATGTAGATTGTGAAACAAAAAA 432 ******* ******** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||