These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2255 fasta sequence [ATATGCTTCCTTTATGGTGAAGTTATAAAGCTGGGATTCTGATGGTTTGACGAAAGCTCTTGGTCCCCAAACAATACTAAACTCCTTTTTCTGTCACATCTTACCGTATTTATATTAAGAAGGATGGACCTTAATATGACAAATCTTTGGTTTCATGGGAAGGAACATATAGCTGCTTCGCCATTCCCACAAGTTGCAACATCAATGAACTTCACTTGCCTTGGCAGCTCAAAAACAATCGAGACTTCTAAAAAAATGTTTCAGCAGAGCGATCAAAGCTTGTCTATTCCTGATGATGGATGCAGGCTTGTCCTTGGACTTGGACCAACACCTAATCTACATTATGCTGATAATGAGTCATCCGGTGGCAACAGGGATAAAGAATCTGCAAATTTGTTCAGCCAACATTTTGCCATAGCCGATCATGGTCTGATGTTGGGCATTTCGAGAGGCGGCACAAGAAATTTTCAAGCCACAACAATGATCGAGAAGTATTCACATCAAAATAGAAATGGTATCGTCTTCCCACTTACTGATGAAGGATCAACTTCAGCTAAAAGGAAACCAGGTGGTTATGTGCTGCCACTTCTGTTTGCTCCAAGATCAGATGATATCTGTCCCAATGGAACACCACCAGTGACCGATATTCAACATGTTGAAACTGTAGATGATTGTGACGATGATCACATTACGTCTCTTAATCAGCAGAAGGTTCAGATTAGCCCCGAGCCTTCAGCAACAACTGATTGTTCTTTTGCTGCAACTTCAGATATGATATTCTCCTCAACTAGCACGGAGCAGAGAAGTCACCAACGACATCCTAAGAAGTGTAGGTTCAATGGGTGTTCAAAAGGAGCAAGAGGGGCAACAGGGCTCTGCATTTCCCATGGTGGTGGTCAGCGGTGTCAAAAGCCTGGTTGCAACAAAGGTGCCGAGAGCCGAACAGCTTACTGCAAATCTCATGGTGGAGGGAAACGGTGTCAGGAGCTAGGCTGCACCAAAAGTGCTGAAGGGAAGACTGAGTTCTGCATTGCTCATGGTGGTGGGCGTCGATGCGGAACTCCGGGGTGTACGAAGGCAGCAAGGGGAAGATCAGGATTTTGCATAAAACATGGTGGAGGGAAGAGATGCAGGGTAGAGGGATGCAGCAGGAGTGCCGAAGGACAGTTTGGGTTGTGCATCTCACATGGAGGTGGTCGCCGGTGTCAGTACCCGAACTGCAGTAAGGGAGCACAAGGAGGCACCATGTTTTGCAAGTCCCATGGTGGAGGCAAACGGTGTATATTTGAAGGCTGTACTAAAGGTGCCGAGGGCAACACGCTGCTATGTAAAGGGCACGGTGGTGGTAAGAGGTGCCTCTTTGAGGGAGGTGGTGTCTGTCCTAAAAGTGTTCATGGTGGAACTAGCTTCTGCGTCGCTCATGGAGGCGGCAAACGCTGTTCTGTACCAGGATGTACCAAGAGCGCCCGTGGTCGCACTGATTGCTGCGTGAGGCATGGTGGTGGCAAGCGTTGCAAGGTTGACGGTTGCGACAAGAGTGCTCAGGGGAGCACGGACTTCTGCAAGGCGCATGGAGGCGGCAAACGATGCGCTTGGAGCACCGGCTGTGAGAGGTTTGCAAGGGGAAGGAGTGGGTTATGTGCTGCACATGGAACCCTGATGGCTTCAAAGCAAGTGCCTGAATCTGAGCACAGCAGAGGCATGATCAGGAACAGCCTCTTCAGCAAGATGGTCTCTGCATCCTCGATGACGGCTGGTGCTAGCATGGATCATGCCATCTCTTCTTCTCTCCCTGGTGCCTCGTCGGATCGCGGTGAGTCCTTGGAAGAGATGCGGAACGGCAAGCTCCTGATACCGCATCAGGTCCTGGTTCCTGGTTCAATGAGGCCATCTTCTTCGCATGGCAAAGGTCAAGAGAACGGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGTGGGGG-CCTGATGTCCATACTTGGAGCTAGAGGCAATCTTGACGATCCGAGGGACTGAATTTTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTAGAATCCATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGAAATTGAGTTCTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGCACTTACATACACAAAGAGCAGAATACCTGAAGAGC] [+] EMBL AK062582 [ATATGCTTCCTTTATGGTGAAGTTATAAAGCTGGGATTCTGATGGTTTGACGAAAGCTCTTGGTCCCCAAACAATACTAAACTCCTTTTTCTGTCACATCTTACCGTATTTATATTAAGAAGGATGGACCTTAATATGACAAATCTTTGGTTTCATGGGAAGGAACATATAGCTGCTTCGCCATTCCCACAAGTTGCAACATCAATGAACTTCACTTGCCTTGGCAGCTCAAAAACAATCGAGACTTCTAAAAAAATGTTTCAGCAGAGCGATCAAAGCTTGTCTATTCCTGATGATGGATGCAGGCTTGTCCTTGGACTTGGACCAACACCTAATCTACATTATGCTGATAATGAGTCATCCGGTGGCAACAGGGATAAAGAATCTGCAAATTTGTTCAGCCAACATTTTGCCATAGCCGATCATGGTCTGATGTTGGGCATTTCGAGAGGCGGCACAAGAAATTTTCAAGCCACAACAATGATCGAGAAGTATTCACATCAAAATAGAAATGGTATCGTCTTCCCACTTACTGATGAAGGATCAACTTCAGCTAAAAGGAAACCAGGTGGTTATGTGCTGCCACTTCTGTTTGCTCCAAGATCAGATGATATCTGTCCCAATGGAACACCACCAGTGACCGATATTCAACATGTTGAAACTGTAGATGATTGTGACGATGATCACATTACGTCTCTTAATCAGCAGAAGGTTCAGATTAGCCCCGAGCCTTCAGCAACAACTGATTGTTCTTTTGCTGCAACTTCAGATATGATATTCTCCTCAACTAGCACGGAGCAGAGAAGTCACCAACGACATCCTAAGAAGTGTAGGTTCAATGGGTGTTCAAAAGGAGCAAGAGGGGCAACAGGGCTCTGCATTTCCCATGGTGGTGGTCAGCGGTGTCAAAAGCCTGGTTGCAACAAAGGTGCCGAGAGCCGAACAGCTTACTGCAAATCTCATGGTGGAGGGAAACGGTGTCAGGAGCTAGGCTGCACCAAAAGTGCTGAAGGGAAGACTGAGTTCTGCATTGCTCATGGTGGTGGGCGTCGATGCGGAACTCCGGGGTGTACGAAGGCAGCAAGGGGAAGATCAGGATTTTGCATAAAACATGGTGGAGGGAAGAGATGCAGGGTAGAGGGATGCAGCAGGAGTGCCGAAGGACAGTTTGGGTTGTGCATCTCACATGGAGGTGGTCGCCGGTGTCAGTACCCGAACTGCAGTAAGGGAGCACAAGGAGGCACCATGTTTTGCAAGTCCCATGGTGGAGGCAAACGGTGTATATTTGAAGGCTGTACTAAAGGTGCCGAGGGCAACACGCTGCTATGTAAAGGGCACGGTGGTGGTAAGAGGTGCCTCTTTGAGGGAGGTGGTGTCTGTCCTAAAAGTGTTCATGGTGGAACTAGCTTCTGCGTCGCTCATGGAGGCGGCAAACGCTGTTCTGTACCAGGATGTACCAAGAGCGCCCGTGGTCGCACTGATTGCTGCGTGAGGCATGGTGGTGGCAAGCGTTGCAAGGTTGACGGTTGCGACAAGAGTGCTCAGGGGAGCACGGACTTCTGCAAGGCGCATGGAGGCGGCAAACGATGCGCTTGGAGCACCGGCTGTGAGAGGTTTGCAAGGGGAAGGAGTGGGTTATGTGCTGCACATGGAACCCTGATGGCTTCAAAGCAAGTGCCTGAATCTGAGCACAGCAGAGGCATGATCAGGAACAGCCTCTTCAGCAAGATGGTCTCTGCATCCTCGATGACGGCTGGTGCTAGCATGGATCATGCCATCTCTTCTTCTCTCCCTGGTGCCTCGTCGGATCGCGGTGAGTCCTTGGAAGAGATGCGGAACGGCAAGCTCCTGATACCGCATCAGGTCCTGGTTCCTGGTTCAATGAGGCCATCTTCTTCGCATGGCAAAGGTCAAGAGAACGGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGTGGGGG CCTGATGTCCATACTTGGAGCTAGAGGCAATCTTGACGATCCGAGGGACTGAATTTTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTAGAATCCATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGAAATTGAGTTCTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGCACTTACATACACAAAGAGCAGAATACCTGAAGAGC] [+] EMBL AW069910 [ GGCA GGTGGTGGTAAGAGGTGCCTCTTTGAGGGAGGTGGTGTCTGTCCTAAAAGTGTTCATGGTGGAACTAGCTTCTGCGTCGCTCATGGAGGCGGCAAACG ] [+] EMBL CF311421 [ AAGAGGTGCCTCTTTGAGGGAGGTGGTGTCTGTCCTAAAAGTGTTCATGGTGGAACTAGCTTCTGCGTCGCTCATGGAGGCGGCAAACGCTGTTCTGTACCAGGATGTACCAAGAGCGCCCGTGGTCGCACTGATTGCTGCGTGAGGCATGGTGGTGGCAAGCGTTGCAAGGTTGACGGTCGCGACAAGAGTGCTCAGGGGAGCACGGACTTCTGCAAGGCGCATGGAGGCGGCAAACGATGCGCTTGGAGCACCGGCTGTGAGAGGTTTGCAAGGGGAAGGAGTGGGTTATGTGCTGCACATGGAACCCTGATGGCTTCAAAGCAAGTGCCTGAATCTGAGCACAGCAGAGGCATGATCAGGAACAGCCTCTTCAGCAAGATGGTCTCTGCATCCTCGATGACGGCTGGTGCTAGCATGGATCATGCCATCTCTTCTTCTCTCCCTGGTGCCTCGTCGGATCGCGGTGAGTCCTTGGAAGAGATGCGGAACGGCAAGCTCCTG ] [+] EMBL CF281437 [ GCTGCACATGGAACCCTGATGGCTTCAAAGCAAGTGCCTGAATCTGAGCACAGCAGAGGCATGATCAGGAACAGCCTCTTCAGCAAGATGGTCTCTGCATCCTCGATGACGGCTGGTGCTAGCATGGATCATGCCATCTCTTCTTCTCTCCCTGGTGCCTCGTCGGATCGCGGTGAGTCCTTGGAAGAGATGCGGAACGGCAAGCTCCTGATACCGCATCAGGTCCTGGTTCCTGGTTCAATGAGGCCATCTTCTTCGCATGGCAAAGGTCAAGAGGACGGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGTGGGGGCCCTGATGTCCATGCTTGGAGCTGGAG ] consensusID : consensus_8711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [AAGGTCAAGAGGACGGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGTGGGGGCCTGATGTCCATGCTTGGAGCTGGAGGCAATCTTGACGATCCGAAGGACTGAATTTTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTAGAATCTATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGAAACTGAATTTTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGCACTTACATACACAAAGAGCAGAATAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF311422 [AAGGTCAAGAGGACGGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGTGGGGGCCTGATGTCCATGCTTGGAGCTGGAGGCAATCTTGACGATCCGAAGGACTGAATTTTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTAGAATCTATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGAAACTGAATTTTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGCACTTACATACACAAAGAGCAGAATAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8711#0 ATATGCTTCCTTTATGGTGAAGTTATAAAGCTGGGATTCTGATGGTTTGACGAAAGCTCT 60 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 TGGTCCCCAAACAATACTAAACTCCTTTTTCTGTCACATCTTACCGTATTTATATTAAGA 120 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 AGGATGGACCTTAATATGACAAATCTTTGGTTTCATGGGAAGGAACATATAGCTGCTTCG 180 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 CCATTCCCACAAGTTGCAACATCAATGAACTTCACTTGCCTTGGCAGCTCAAAAACAATC 240 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 GAGACTTCTAAAAAAATGTTTCAGCAGAGCGATCAAAGCTTGTCTATTCCTGATGATGGA 300 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 TGCAGGCTTGTCCTTGGACTTGGACCAACACCTAATCTACATTATGCTGATAATGAGTCA 360 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 TCCGGTGGCAACAGGGATAAAGAATCTGCAAATTTGTTCAGCCAACATTTTGCCATAGCC 420 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 GATCATGGTCTGATGTTGGGCATTTCGAGAGGCGGCACAAGAAATTTTCAAGCCACAACA 480 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 ATGATCGAGAAGTATTCACATCAAAATAGAAATGGTATCGTCTTCCCACTTACTGATGAA 540 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 GGATCAACTTCAGCTAAAAGGAAACCAGGTGGTTATGTGCTGCCACTTCTGTTTGCTCCA 600 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 AGATCAGATGATATCTGTCCCAATGGAACACCACCAGTGACCGATATTCAACATGTTGAA 660 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 ACTGTAGATGATTGTGACGATGATCACATTACGTCTCTTAATCAGCAGAAGGTTCAGATT 720 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 AGCCCCGAGCCTTCAGCAACAACTGATTGTTCTTTTGCTGCAACTTCAGATATGATATTC 780 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 TCCTCAACTAGCACGGAGCAGAGAAGTCACCAACGACATCCTAAGAAGTGTAGGTTCAAT 840 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 GGGTGTTCAAAAGGAGCAAGAGGGGCAACAGGGCTCTGCATTTCCCATGGTGGTGGTCAG 900 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 CGGTGTCAAAAGCCTGGTTGCAACAAAGGTGCCGAGAGCCGAACAGCTTACTGCAAATCT 960 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 CATGGTGGAGGGAAACGGTGTCAGGAGCTAGGCTGCACCAAAAGTGCTGAAGGGAAGACT 1020 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 GAGTTCTGCATTGCTCATGGTGGTGGGCGTCGATGCGGAACTCCGGGGTGTACGAAGGCA 1080 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 GCAAGGGGAAGATCAGGATTTTGCATAAAACATGGTGGAGGGAAGAGATGCAGGGTAGAG 1140 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 GGATGCAGCAGGAGTGCCGAAGGACAGTTTGGGTTGTGCATCTCACATGGAGGTGGTCGC 1200 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 CGGTGTCAGTACCCGAACTGCAGTAAGGGAGCACAAGGAGGCACCATGTTTTGCAAGTCC 1260 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 CATGGTGGAGGCAAACGGTGTATATTTGAAGGCTGTACTAAAGGTGCCGAGGGCAACACG 1320 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 CTGCTATGTAAAGGGCACGGTGGTGGTAAGAGGTGCCTCTTTGAGGGAGGTGGTGTCTGT 1380 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 CCTAAAAGTGTTCATGGTGGAACTAGCTTCTGCGTCGCTCATGGAGGCGGCAAACGCTGT 1440 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 TCTGTACCAGGATGTACCAAGAGCGCCCGTGGTCGCACTGATTGCTGCGTGAGGCATGGT 1500 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 GGTGGCAAGCGTTGCAAGGTTGACGGTTGCGACAAGAGTGCTCAGGGGAGCACGGACTTC 1560 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 TGCAAGGCGCATGGAGGCGGCAAACGATGCGCTTGGAGCACCGGCTGTGAGAGGTTTGCA 1620 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 AGGGGAAGGAGTGGGTTATGTGCTGCACATGGAACCCTGATGGCTTCAAAGCAAGTGCCT 1680 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 GAATCTGAGCACAGCAGAGGCATGATCAGGAACAGCCTCTTCAGCAAGATGGTCTCTGCA 1740 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 TCCTCGATGACGGCTGGTGCTAGCATGGATCATGCCATCTCTTCTTCTCTCCCTGGTGCC 1800 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 TCGTCGGATCGCGGTGAGTCCTTGGAAGAGATGCGGAACGGCAAGCTCCTGATACCGCAT 1860 consensus_8711#1 ------------------------------------------------------------ consensus_8711#0 CAGGTCCTGGTTCCTGGTTCAATGAGGCCATCTTCTTCGCATGGCAAAGGTCAAGAGAAC 1920 consensus_8711#1 ----------------------------------------------AAGGTCAAGAGGAC 14 *********** ** consensus_8711#0 GGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGT 1980 consensus_8711#1 GGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGT 74 ************************************************************ consensus_8711#0 GGGGGCCTGATGTCCATACTTGGAGCTAGAGGCAATCTTGACGATCCGAGGGACTGAATT 2040 consensus_8711#1 GGGGGCCTGATGTCCATGCTTGGAGCTGGAGGCAATCTTGACGATCCGAAGGACTGAATT 134 ***************** ********* ********************* ********** consensus_8711#0 TTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTA 2100 consensus_8711#1 TTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTA 194 ************************************************************ consensus_8711#0 GAATCCATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGA 2160 consensus_8711#1 GAATCTATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGA 254 ***** ****************************************************** consensus_8711#0 AATTGAGTTCTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGC 2220 consensus_8711#1 AACTGAATTTTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGC 314 ** *** ** ************************************************** consensus_8711#0 ACTTACATACACAAAGAGCAGAATACCTGAAGAGC------------- 2255 consensus_8711#1 ACTTACATACACAAAGAGCAGAATAAAAAAAAAAAAAAAAAAAAAAAA 362 ************************* ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||