These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 966 fasta sequence [AATGGTATTTTCACCAAAAATGAGCAAGAAAAGCAACTGGAGTGCATTTTAATATCTATTATGAAGTTGTCAAAGGAATTTGTGGAGATCGAGCAAAAATTATCAGTAGAAAGAAGTGCAAGCAGGTCAGAGGATTTGAGTGATCATTGCAACCACATGGTCAGACAAGCCGTTGTACTAACAAAAATAGGCCTTTGGTACAAACAAATGCTAGAAACAAGGCGTTCTGAGCTCCAGAAGGCTGAAGCCAAGGTTGTCATTTTGGGCGACAAGGTTAATTCACATTTAAACCTTCTTCAGAAGATATATGTAACTCTTGATCGCTACTCCCCTACATTACAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGTTGCAGGTTTGAGAAGTAATCAGAACAAAGATGATACGACAGCATAAAAAGGGCAACT-----AGGCATGCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACAACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCATAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACTCACCTTCTGATATGCAGCTATATATATACACGTTCAGAAAATAGCTCCATGTAGTGTTTGTAGGTCATGCAGTTATACGTACAAGCCAGAAACTCAGAACGACATTCTGTAGAGAATAATTATCAGCCAGTGGCCTGGTAATGTACAGATTACACTGTTCAGGTCTTTGGGTAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGTAACTGTTTTCATCTTTCAAAACTCATATT-GCCAACTAACTGTATAGCTAGATTACCTGTATAACGAGAAACTTTGGTCCATG] [+] EMBL AK108472 [AATGGTATTTTCACCAAAAATGAGCAAGAAAAGCAACTGGAGTGCATTTTAATATCTATTATGAAGTTGTCAAAGGAATTTGTGGAGATCGAGCAAAAATTATCAGTAGAAAGAAGTGCAAGCAGGTCAGAGGATTTGAGTGATCATTGCAACCACATGGTCAGACAAGCCGTTGTACTAACAAAAATAGGCCTTTGGTACAAACAAATGCTAGAAACAAGGCGTTCTGAGCTCCAGAAGGCTGAAGCCAAGGTTGTCATTTTGGGCGACAAGGTTAATTCACATTTAAACCTTCTTCAGAAGATATATGTAACTCTTGATCGCTACTCCCCTACATTACAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGTTGCAGGTTTGAGAAGTAATCAGAACAAAGATGATACGACAGCATAAAAAGGGCAACTAGTGCAGGCATGCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACAACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCATAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACTCACCTTCTGATATGCAGCTATATATATACACGTTCAGAAAATAGCTCCATGTAGTGTTTGTAGGTCATGCAGTTATACGTACAAGCCAGAAACTCAGAACGACATTCTGTAGAGAATAATTATCAGCCAGTGGCCTGGTAATGTACAGATTACACTGTTCAGGTCTTTGGGTAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGTAACTGTTTTCATCTTTCAAAACTCATATT GCCAACTAACTGTATAGCTAGATTACCTGTATAACGAGA ] [-] EMBL CB648509 [ AGCAGGTCAGAGGATTTGAGTGATCATTGCAACCACATGGTCAGACAAGCCGTTGTACTAACAAAAATAGGCCTTTGGTACAAACAAATGCTAGAAACAAGGCGTTCTGAGCTCCAGAAGGCTGAAGCCAAGGTTGTCATTTTGGGCGACAAGGTTAATTCACATTTAAACCTTCTTCAGAAGATATATGTAACTCTTGATCGCTACTCCCCTACATTACAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGTTGCAGGTTTGAGAAGTAATCAGAACAAAGATGATACGACAGCATAAAAAGGGCAACT AGGCATGCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACAACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCATAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACTCACCTTCTGATATGCAGCTATATATATACACGTTCAGAAAATAGCTCCATGTAGTGTTTGTAGGTCATGCAGTTATACGTACAAGCCAGAAACTCAGAACGACATTCTGTAGAGAATAATTATCAGCCAGTGGCCTGGTAATGTACAGATTACACTGTTCAGGTCTTTGGGTAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGTAACTGTTT ] [+] EMBL CB096928 [ AACAAAAATAGGCCTTTGGTACAAACAAATGCTAGAAACAAGGCGTTCTGAGCTCCAGAAGGCTGAAGCCAAGGTTGTCATTTTGGGCGACAAGGTTAATTCACATTTAAACCTTCTTCAGAAGATATATGTAACTCTTGATCGCTACTCCCCTACATTACAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGTTGCAGGTTTGAGAAGTAATCAGAACAAAGATGATACGACAGCATAAAAAGGGCAACT AGGCATGCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACAACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCACAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACTCACCTTCTGATCTGCAGCTATATATATACACGTTCAGAAAATAGCTCCATGTAGTGTTTGTAGGTCATGCAGTTATACGTACAGGCCAGAAACTCAGAACGACATTCTGTAGAGAATAATTATCAGCCAGTGGCCTGGTAATGTACAGATTACACTGNTCANGTCTTTGGGTAGACGGGATANGCGCATCTTTGNTTAGCCAGATACACGNTTTGTAATCATNCACTATGTAACTGGTTTCATCTTTCAAAACTCATATTGGCCAACTAACTGGATAGCTAGATTACCTGNATAACGAGAAACTTTGGTCCATG] consensusID : consensus_8712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 833 fasta sequence [GTTTAGCTAATGAAGAAAACCAGAGGTTAAAGGAGAAGTTGTCAAAACAAGAAAAGGAGCATGGCATCCAAAATAACCAGGACTCTCCTGAGTTAATCAAACAGGACAATGAGGAAATGATACTCCGTGATATCGAGATGGAGCCTCATGTATCACCTAGGAGATCATATGCCATTTCTGAGCAGAATGCAGAGTATGAGGAGCTCATCAAACTGAAGCAAACTTTAGAGATTGCCTCAACTGCCTTGAAGGAAGTTGAATCAAACGAATTGGATTATAATGGTATTCTAGGTAAAAATGAGCAAGAAAAGCAACTAGAATTCATTTTGGTATCCATTATGGATTTGTCAAAAGAATTTGTGCAGATTGAAAATAAAATGTCAGGGGATATGAAGGGAAGTGAAAAAGGGCCTGAAATTCTGGGTTATCAATGCAAGCATATGGTACAGCAGGCACTTGTGCTAACAAAGAAGGGCCTTTGGTATAAGCAAATGCTAGACACAAGACGGTCTCAACTCCGAAAAGCTGAAGCTGAGGTTTGACGTTTTAGGAAATAAGGTTAGCACACTTCTTAAGTCTTGTTCAAAAGATATACGTGACTCTCGAGCATTACTCTCCAGTATTTCAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGNTGCAGGNTTAAGAAGTAAACAAAAAGAGGACCTTACAGGATACATCTTAAAGTTGGAGCAGCTAGATAATTTAGCAATATTTTAGTTGACAAAGGCTTTAGGATTTCTAGTAGGATAANTGATGNCATGGGGGGAGGAGCAACATGGTTCAAGCATCT] [+] EMBL CA764651 [GTTTAGCTAATGAAGAAAACCAGAGGTTAAAGGAGAAGTTGTCAAAACAAGAAAAGGAGCATGGCATCCAAAATAACCAGGACTCTCCTGAGTTAATCAAACAGGACAATGAGGAAATGATACTCCGTGATATCGAGATGGAGCCTCATGTATCACCTAGGAGATCATATGCCATTTCTGAGCAGAATGCAGAGTATGAGGAGCTCATCAAACTGAAGCAAACTTTAGAGATTGCCTCAACTGCCTTGAAGGAAGTTGAATCAAACGAATTGGATTATAATGGTATTCTAGGTAAAAATGAGCAAGAAAAGCAACTAGAATTCATTTTGGTATCCATTATGGATTTGTCAAAAGAATTTGTGCAGATTGAAAATAAAATGTCAGGGGATATGAAGGGAAGTGAAAAAGGGCCTGAAATTCTGGGTTATCAATGCAAGCATATGGTACAGCAGGCACTTGTGCTAACAAAGAAGGGCCTTTGGTATAAGCAAATGCTAGACACAAGACGGTCTCAACTCCGAAAAGCTGAAGCTGAGGTTTGACGTTTTAGGAAATAAGGTTAGCACACTTCTTAAGTCTTGTTCAAAAGATATACGTGACTCTCGAGCATTACTCTCCAGTATTTCAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGNTGCAGGNTTAAGAAGTAAACAAAAAGAGGACCTTACAGGATACATCTTAAAGTTGGAGCAGCTAGATAATTTAGCAATATTTTAGTTGACAAAGGCTTTAGGATTTCTAGTAGGATAANTGATGNCATGGGGGGAGGAGCAACATGGTTCAAGCATCT] consensusID : consensus_8712#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [GCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACNACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCATAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACCTCACCTTCTGATATGCAGCTATATATATACACCGTTCAGAAAATAGCTCCACTGTAGTGTTTGTAGGTCACTGCAGTTATACGTACAAGCCAGAAACTCAGAACGACACTTCTGTAGAGAATAATTATCAGCCACGTGGCCTGGTAATGTACAGATTACACTGTTCAGGTCTTTGGGTAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGTAACTGTTTTCATCTTTCNAAACTCATATTGCCCAAAAAAAAA] [+] EMBL BQ906246 [GCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACNACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCATAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACCTCACCTTCTGATATGCAGCTATATATATACACCGTTCAGAAAATAGCTCCACTGTAGTGTTTGTAGGTCACTGCAGTTATACGTACAAGCCAGAAACTCAGAACGACACTTCTGTAGAGAATAATTATCAGCCACGTGGCCTGGTAATGTACAGATTACACTGTTCAGGTCTTTGGGTAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGTAACTGTTTTCATCTTTCNAAACTCATATTGCCCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8712#0 AATGGTATTTTCACCAAAAATGAGCAAGAAAAGCAACTGGAGTGCATTTTAATATCTATT 60 consensus_8712#2 ------------------------------------------------------------ consensus_8712#1 ------------------------------------------------------------ consensus_8712#0 ATGAAGTTGTCAAAGGAATTTGTGGAGATCGAGCAAAAATTATCAGTAGAAAGAAGTGCA 120 consensus_8712#2 ------------------------------------------------------------ consensus_8712#1 ------------------------------------------------------------ consensus_8712#0 AGCAGGTCAGAGGATTTGAGTGATCATTGCAACCACATGGTCAGACAAGCCGTTGTACTA 180 consensus_8712#2 ------------------------------------------------------------ consensus_8712#1 ------------------------------------------------------------ consensus_8712#0 ACAAAAATAGGCCTTTGGTACAAACAAATGCTAGAAACAAGGCGTTCTGAGCTCCAGAAG 240 consensus_8712#2 ------------------------------------------------------------ consensus_8712#1 ------------------------------------------------------------ consensus_8712#0 GCTGAAGCCAAGGTTGTCATTTTGGGCGACAAGGTTAATTCACATTTAAACCTTCTTCAG 300 consensus_8712#2 ------------------------------------------------------------ consensus_8712#1 -GTTTAGCTAATGAAGAAAACCAGAGGTTAAAGGAGAAGTTGTCAAAACAAGAAAAGGAG 59 consensus_8712#0 AAGATATATGTAACTCTTGATCGCTACTCCCCTACATTACAGCAATATCCTGGGTTGCTA 360 consensus_8712#2 ------------------------------------------------------------ consensus_8712#1 CATGGCATCCAAAATAACCAGGACTCTCCTGAGTTAATCAAACAGGACAATGAGGAAATG 119 consensus_8712#0 GATGCTTTCTTGAAGACATGCAAGCTTGTTGCAGGTTTGAGAAGTAATCAGAACAAAGAT 420 consensus_8712#2 ------------------------------------------------------------ consensus_8712#1 ATACTCCGTGATATCGAGATGGAGCCTCATGTATCACCTAGGAGATCATATGCCATTTCT 179 consensus_8712#0 GATACGACAGCATAAAAAGGGCAACTAGGCATGCTCAAGAGTAGACTCATGAGGACCT-- 478 consensus_8712#2 --------------------------------GCTCAAGAGTAGACTCATGAGGACCT-- 26 consensus_8712#1 GAGCAGAATGCAGAGTATGAGGAGCTCATCAAACTGAAGCAAACTTTAGAGATTGCCTCA 239 ** *** * * ** *** consensus_8712#0 ACTGCC----AGGAGGGTACAACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCA 534 consensus_8712#2 ACTGCC----AGGAGGGTACNACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCA 82 consensus_8712#1 ACTGCCTTGAAGGAAGTTGAATCAAACGAATTGG-ATTATAATGGTATTCTAGGTAAAAA 298 ****** **** * * * ** * ** ** * * * consensus_8712#0 TAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAAT 594 consensus_8712#2 TAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAAT 142 consensus_8712#1 TGAGCAAGAAAAGCAACTAGAATTCATTTTGGTATCCATTATGGATTTGTCAAAAGAATT 358 * * *** * * * ** ** *** * * * ** *** * * * consensus_8712#0 TATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCAC-T 653 consensus_8712#2 TATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACCT 202 consensus_8712#1 TGTGCAGATT---GAAAATAAAATGTCAGGGGATATG--AAGGGAAGTGAAAAAGGGCCT 413 * * * ** * * * * *** * *** * * **** ** * * consensus_8712#0 CACCTTCTGATATGCAGCTATATATATACAC-GTTCAGAAAATAGCTCCA-TGTAGTGTT 711 consensus_8712#2 CACCTTCTGATATGCAGCTATATATATACACCGTTCAGAAAATAGCTCCACTGTAGTGTT 262 consensus_8712#1 GAAATTCTGGGTTAT--CAATGCAAGCATATGGTACAGCAGGCACTTGTG--CTAACAAA 469 * ***** * * ** * * * ** *** * * * ** consensus_8712#0 TGTAGGTCA-TGCAGTTATACGTACAAGCCAGAAACTCAGAACGA---CA-TTCTGTAGA 766 consensus_8712#2 TGTAGGTCACTGCAGTTATACGTACAAGCCAGAAACTCAGAACGA---CACTTCTGTAGA 319 consensus_8712#1 GAAGGGCCTTTG---GTATAAGCAAATGCTAGACA--CAAGACGGTCTCAACTCCGAAAA 524 ** * ** **** * * * ** *** * ** *** ** ** * * * consensus_8712#0 GAATAATTATCAGCCA-GTGGCCT-GGTAATGTACAGATTACACTGTTCAGGTCTTTGGG 824 consensus_8712#2 GAATAATTATCAGCCACGTGGCCT-GGTAATGTACAGATTACACTGTTCAGGTCTTTGGG 378 consensus_8712#1 GCTGAAGCTGAGGTTTGACGTTTTAGGAAATAAGGTTAGCACACTTCTTAAGTCTT---G 581 * ** * * * ** *** * ***** * * ***** * consensus_8712#0 TAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGT 884 consensus_8712#2 TAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGT 438 consensus_8712#1 TTCAAAAGATATACGTGACTCTCGAGCATTACTCTCCAGTATTTCAGCAATATCCTGGGT 641 * * **** ** ** * * * ** ** * ** ** ** consensus_8712#0 AACTGTTTTCATCTTTCAAAACTCATA---TTGCCAACTAACTGTATAGCTAGATTACCT 941 consensus_8712#2 AACTGTTTTCATCTTTCNAAACTCATA---TTGCCCAAAAAAAAA--------------- 480 consensus_8712#1 TGCTAGATGCTTTCTTGAAGACATGCAAGCTTGNTGCAGGNTTAAGAAGTAAACAAAAAG 701 ** * * * ** * ** * *** consensus_8712#0 GTATAACGAGAAACTTTGGTCCATG----------------------------------- 966 consensus_8712#2 ------------------------------------------------------------ consensus_8712#1 AGGACCTTACAGGATACATCTTAAAGTTGGAGCAGCTAGATAATTTAGCAATATTTTAGT 761 consensus_8712#0 ------------------------------------------------------------ consensus_8712#2 ------------------------------------------------------------ consensus_8712#1 TGACAAAGGCTTTAGGATTTCTAGTAGGATAANTGATGNCATGGGGGGAGGAGCAACATG 821 consensus_8712#0 ------------ consensus_8712#2 ------------ consensus_8712#1 GTTCAAGCATCT 833 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||