These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1015 fasta sequence [CAAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGC-GAC-GGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGAGGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCA---GAGGAAGAGAAGAACGAGCTAGACGAC-GACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGACTTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTCAAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACTCATGACTTGTATCTGATTTCATCAACTTAATTGAAACAACAAATGCTGATAAAAA] [+] EMBL AK069900 [CAAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGC GAC GGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGAGGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCA GAGGAAGAGAAGAACGAGCTAGACGAC GACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGACTTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTCAAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACTCATGACTTGTATCTGATTTCATCAACTTAATTGAAACA ] [+] EMBL AU172789 [ AAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGCNGACNGGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGAGGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAA ] [+] EMBL BE040395 [ aTCTCCTGGGTGATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGC GAC GGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCGGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCANGCCGTGGAGGTGGCGGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACCGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGTGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGTCACCCAAGAAAGGCACTGATGAAGACGACCAAAAAGATGAAGATGGTGCANAGGAGGAAGAGAAG ACNAGCTANACGAC GACATCTAGGCCACCCGTCCAATGGATGGATGGGTGGGTAATTCCT TCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAATATCCATTGATTCTGGTGGGGGGGA TCTAGTACTAGAACTACTAGTGGCTGCAGTGTGACCTGC CCTCAAGTGAATG ATGGATGAATG ] [+] EMBL AU172790 [ TGAAGATGGTGCA GAGGAAGAGAAGAACGAGCTAGACGACGGACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGACTTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTCAAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACTCATGACTTGTATCTGATTTCATCAACTTAATTGAAACAACAAATGCTGATAAAAA] consensusID : consensus_8764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [GCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGGAAGTAAGTAAGTAAGTAGCGGC] [-] EMBL AU225712 [GCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGGAAGTAAGTAAGTAAGTAGCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8764#0 CAAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAG 60 consensus_8764#1 ------------------------------------------------------------ consensus_8764#0 GAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGCGACGGCAGCGCCTT 120 consensus_8764#1 ------------------------------------------------------------ consensus_8764#0 CACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTG 180 consensus_8764#1 ------------------------------------------------------------ consensus_8764#0 CAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGA 240 consensus_8764#1 ------------------------------------------------------------ consensus_8764#0 GGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAA 300 consensus_8764#1 ------------------------------------------------------------ consensus_8764#0 AAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTA 360 consensus_8764#1 ------------------------------------------------------------ consensus_8764#0 CAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAG 420 consensus_8764#1 ------------------------------------------------------------ consensus_8764#0 GTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAA 480 consensus_8764#1 ------------------------------------------------------GCTCAA 6 ****** consensus_8764#0 GGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGA 540 consensus_8764#1 GGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGA 66 ************************************************************ consensus_8764#0 GCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGA 600 consensus_8764#1 GCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGA 126 ************************************************************ consensus_8764#0 TGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGA 660 consensus_8764#1 TGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGA 186 ************************************************************ consensus_8764#0 TGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTAT 720 consensus_8764#1 TGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTAT 246 ************************************************************ consensus_8764#0 GCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACT 780 consensus_8764#1 GCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACT 306 ************************************************************ consensus_8764#0 ACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGAC 840 consensus_8764#1 ACTAGTGCTTGCAGTGTGACCTGCACATCAAGGAAGTAAGTAAGTAAGTAGCGGC----- 361 ******************************** * * * * * * * * consensus_8764#0 TTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTC 900 consensus_8764#1 ------------------------------------------------------------ consensus_8764#0 AAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACT 960 consensus_8764#1 ------------------------------------------------------------ consensus_8764#0 CATGACTTGTATCTGATTTCATCAACTTAATTGAAACAACAAATGCTGATAAAAA 1015 consensus_8764#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||