These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1213 fasta sequence [CCGTTTCGTTTCGTCTCCCCGCCGCGTTCTTAAATCCCAAGCCCAAGCCGCCCTCGCACTTCCTCTTCCCCCACCTCGCCGAGCTCCACGCCGCCGCCGCGGCGCCCCGTCTCCCACGCCGCTTCGCCCCGTCGTCTGCGGGGGAGCCGCTTGGAGTCAAGAGCAGCGACCGGTTCAAGTCTCGGGGGACGACTCGACTCCTCCACGCGGGTCGCGGACTCAGCGGTGCCGTACTCTGCCACCCGTGTGTGCCTGATATATGTGAGTTCGTGCCTTTTCCCTTGGGTGGCGGCAGCAGCAGCTGAGTCTCGTGGAGGAGGAGGTAGCGTCGTCGGTCGGCACGCGTATGGCCATGGACCTCGTCCGCCGGGAAGCGGACCGGGGCGCCGCGCCGGAGTTCGTGGCGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCAAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGGTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAGCCCAAAGGAGCAGTTCCACCCTTCAACACCAACAGCTGGTGGGGCAAAGCGCCGACGAACAGGCAGACGGGTCCCAGGGTGGCGTGACCCGAGGAAGATCCTTTTTGCCTTCGCAGCACTGTCTAGTGTGGGCACGTTGATCTTGCTCTACTTCACACTCTCAATGGGGAGGATGACAGGAGGTCAGGCTGATGG-CCAGTGATGCCATCTGACCGCACAGTTTATCACTTTTCATAGTGTTTCTGATGTTTGTAAAGAT-CAAGAAATGGACGGTTGGTTTCTATACTAGC-AGTGTTACATCACTGCTTAATTATATCACCATGATTTAGATGTTTGTACAAAAATATGTAGGCCGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATAAACACATGAACAGCAATTGGATGGACGACGGCGGTGGAACAAAAT-GGCAGGGAAAATTGGATAAAAGCATTGTCGCTGCAACAACGAAGTTACCTATTGTAGCTTTNGGGATTTTGACTGTNCAAATGAGGGTTTACACATGNAGGGGTAAATATTCTTTTGCGGNCCATTGACCCGCTCCTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK061223 [CCGTTTCGTTTCGTCTCCCCGCCGCGTTCTTAAATCCCAAGCCCAAGCCGCCCTCGCACTTCCTCTTCCCCCACCTCGCCGAGCTCCACGCCGCCGCCGCGGCGCCCCGTCTCCCACGCCGCTTCGCCCCGTCGTCTGCGGGGGAGCCGCTTGGAGTCAAGAGCAGCGACCGGTTCAAGTCTCGGGGGACGACTCGACTCCTCCACGCGGGTCGCGGACTCAGCGGTGCCGTACTCTGCCACCCGTGTGTGCCTGATATATGTGAGTTCGTGCCTTTTCCCTTGGGTGGCGGCAGCAGCAGCTGAGTCTCGTGGAGGAGGAGGTAGCGTCGTCGGTCGGCACGCGTATGGCCATGGACCTCGTCCGCCGGGAAGCGGACCGGGGCGCCGCGCCGGAGTTCGTGGCGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCAAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGGTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAGCCCAAAGGAGCAGTTCCACCCTTCAACACCAACAGCTGGTGGGGCAAAGCGCCGACGAACAGGCAGACGGGTCCCAGGGTGGCGTGACCCGAGGAAGATCCTTTTTGCCTTCGCAGCACTGTCTAGTGTGGGCACGTTGATCTTGCTCTACTTCACACTCTCAATGGGGAGGATGACAGGAGGTCAGGCTGATGG CCAGTGATGCCATCTGACCGCACAGTTTATCACTTTTCATAGTGTTTCTGATGTTTGTAAAGAT CAAGAAATGGACGGTTGGTTTCTATACTAGC AGTGTTACATCACTGCTTAATTATATCACCATGATTTAGATGTTTGTACAAAAATATGTAGGCCGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATAAACACATGAACAGCAATTGGATGGACGACG ] [+] EMBL OSS12776A [ CTAGTGTGGGCACGTTGATCTTGCTCTACTTCACACTCTCAATGGGGAGGATGACAGGAGGTCAGGCTGATGG CCAGTGATGCCATCTGACCGCACAGTTTATCACTTTTCATAGTGTTTCTGATGTTTGTAAAGAT CAAGAAATGGACGGTTGGTTTCTATACTAGC AGTGTTACATCACTGCTTAATTATATCACCATGATTTAGATGTTTGTACAAAAATATGTAGGCCGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATAAACACATGAACAGCAATTGGATGGACGACGGCGGTGGGACAAAAT GGCAGGGAAAATTGGNTAAAAGCATTGTCGCTGCAACAACGNAGTTACCTATTGTAGCTTTNGGGATTTTGACTGTNCAAATGAGGGTTTACACATGNAGGGGTAAATATTCTTTTGCGGNCCATTGACCC ] [+] EMBL OSS13231A [ CTAGTGTGGGCACGTTGATCTTGCTCTACTTCACACTCTCAATGGGGAGGATGACAGGAGGTCAGGCTGATGG CCAGTGATGCCATCTGACCGCACAGTTTATCACTTTTCATAGTGTTTCTGATGTTTGTAAAGAT CAAGAAATGGACGGTTGGTTTCTATACTAGC AGTGTTACATCACTGCTTAATTATATCACCATGATTTAGATGTTTGTACAAAAATATGTAGGCCGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATAAACACATGAACAGCAATTGGATGGACGACGGCGGTGGANCAAAATGGGCAGGGAAAATTGGATAAAAGCATTGTCGCTGCACCAACGAGGTTACCTATTGTAGCTTTGGGG ] [+] EMBL AU088695 [ CTGATGGCCCAGTGATGCCTTCTGACCGCACAGTTTATCACTTTTCATAGTGTTTCTGATGTTTNTAAAGNTCCAAGAAATGGACGGTTGGTTTCTATACTAGCNAGTGTTACATCACTGCTTAATTATATCACCATGATTTAGATGTTTGTACAAAAATATGTAGGCCGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATAAACACATGAACAGCAATTGGATGGACGACGGCGNTGGAACAAAAT GGCAGGGAAAATTGGATAAAAGCATTGTCNCTGCAACAACGAAGTTACCTATTGTAGCTTT GGGATTTTGACTGTACAAATGAGGTTTTACACATGAAGAGATAAATATTCTTTTGCGGACCATTGAACCGCTCCTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [ANCCNNCCATGGGNTTTTCCCCAAGTNTCCNACGTTTGTAAAAANGACCGGNCCCAATNANNCCCNNNTNAAATNCAGTATTNNACCTANTNAGNGCNAAATTTGGGGTACNGGNNCCCCCCCCTCGNAGNTTCGTCCCCANNTCNTNCCGNNGCANTNTCCNAGTGTGGGCAACCGTNGATCTTGCTCTACTTCAACACTTCTCAATGGGGGAAGGATNACAGGNGGTCAGGCTGATGGGCCAGTGNTGCCCTTCTGACCTCTCAGTTTATCACCTTTATCATAGTGTTTCTTGATGTTTGTAAANNTCAAGAAATGNGACGNTTGGTTTACTATTACTNGCCAGTGTTAACATCACTGCTTAATTAATATCACCATGAATTTANTATGTTTGTAACAAAAATATGTAGGCCGTNTGTTNGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATNCTTGAAGTGTAAATATACACATGAACAGCAATTGGATGGACGACGGCGGTGGAACAAAATGGCAGGGAAAATTGAANAAAAAAATTNCCNCTNCCACAACGAAGTTACCTATTGTAGCTTTGGGATTTTGACTGTANAAATGAGGTTTTACACATGAAGAGATAAATATTCTTTTGCGGACCATTGAACCGCTCCTCCTAAAAAAAAAAAAAAAAAAAAAAAAGNAAAAAAA] [+] EMBL AU032671 [ANCCNNCCATGGGNTTTTCCCCAAGTNTCCNACGTTTGTAAAAANGACCGGNCCCAATNANNCCCNNNTNAAATNCAGTATTNNACCTANTNAGNGCNAAATTTGGGGTACNGGNNCCCCCCCCTCGNAGNTTCGTCCCCANNTCNTNCCGNNGCANTNTCCNAGTGTGGGCAACCGTNGATCTTGCTCTACTTCAACACTTCTCAATGGGGGAAGGATNACAGGNGGTCAGGCTGATGGGCCAGTGNTGCCCTTCTGACCTCTCAGTTTATCACCTTTATCATAGTGTTTCTTGATGTTTGTAAANNTCAAGAAATGNGACGNTTGGTTTACTATTACTNGCCAGTGTTAACATCACTGCTTAATTAATATCACCATGAATTTANTATGTTTGTAACAAAAATATGTAGGCCGTNTGTTNGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATNCTTGAAGTGTAAATATACACATGAACAGCAATTGGATGGACGACGGCGGTGGAACAAAATGGCAGGGAAAATTGAANAAAAAAATTNCCNCTNCCACAACGAAGTTACCTATTGTAGCTTTGGGATTTTGACTGTANAAATGAGGTTTTACACATGAAGAGATAAATATTCTTTTGCGGACCATTGAACCGCTCCTCCTAAAAAAAAAAAAAAAAAAAAAAAAGNAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8765#0 CCGTTTCGTTTCGTCTCCCCGCCGCGTTCTTAAATCCCAAGCCCAAGCCGCCCTCGCACT 60 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 TCCTCTTCCCCCACCTCGCCGAGCTCCACGCCGCCGCCGCGGCGCCCCGTCTCCCACGCC 120 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 GCTTCGCCCCGTCGTCTGCGGGGGAGCCGCTTGGAGTCAAGAGCAGCGACCGGTTCAAGT 180 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 CTCGGGGGACGACTCGACTCCTCCACGCGGGTCGCGGACTCAGCGGTGCCGTACTCTGCC 240 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 ACCCGTGTGTGCCTGATATATGTGAGTTCGTGCCTTTTCCCTTGGGTGGCGGCAGCAGCA 300 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 GCTGAGTCTCGTGGAGGAGGAGGTAGCGTCGTCGGTCGGCACGCGTATGGCCATGGACCT 360 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 CGTCCGCCGGGAAGCGGACCGGGGCGCCGCGCCGGAGTTCGTGGCGGTCGACATCGGGGG 420 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 CGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCAAGAAGATGGAGTCCTCCTTCGCTGG 480 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 GAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGGTGTGTTGGC 540 consensus_8765#1 ---------------------------------------------------------ANC 3 * consensus_8765#0 CGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAGCCCAAAGGAGCAGTTCCA 600 consensus_8765#1 CNNCCATGGGN------TTTTCCCCAAGTNT-CCNACGTTTGTAAAAANGACCGGNCCCA 56 * *** * * * ** * * * * * *** ** * * *** consensus_8765#0 CCCTTCAACACCAACAGCTGGTGGGGCAAAGCGCCGACGAACAGGCAGAC--GGGTCCCA 658 consensus_8765#1 AT----NANNCCCNNNTNAAATNCAGTATTNNACCTANTNAGNGCNAAATTTGGGGTACN 112 * ** * * * ** * * * * * *** * consensus_8765#0 GGGTGGCGTGACCCGAGGAA--GATCCTTTTTGCCTTCGCAGCACTGTC-TAGTGTGGGC 715 consensus_8765#1 GGNNCCCCCCCCTCGNAGNTTCGTCCCCANNTCNTNCCGNNGCANTNTCCNAGTGTGGGC 172 ** * * ** * * ** * ** *** * ** ********* consensus_8765#0 A--CGTTGATCTTGCTCTACTTCA-CACT-CTCAATGGGG--AGGATGACAGGAGGTCAG 769 consensus_8765#1 AACCGTNGATCTTGCTCTACTTCAACACTTCTCAATGGGGGAAGGATNACAGGNGGTCAG 232 * *** ***************** **** ********** ***** ***** ****** consensus_8765#0 GCTGATGG-CCAGTGATGCCAT-CTGACCGCACAGTTTATCACTTTT--CATAGTGTTTC 825 consensus_8765#1 GCTGATGGGCCAGTGNTGCCCTTCTGACCTCTCAGTTTATCACCTTTATCATAGTGTTTC 292 ******** ****** **** * ****** * *********** *** *********** consensus_8765#0 T-GATGTTTGTAAAGATCAAGAAATGG-ACGGTTGGTTT-CTAT-ACTAGC-AGTGTTA- 879 consensus_8765#1 TTGATGTTTGTAAANNTCAAGAAATGNGACGNTTGGTTTACTATTACTNGCCAGTGTTAA 352 * ************ ********** *** ******* **** *** ** ******* consensus_8765#0 CATCACTGCTTAATTA-TATCACCATGA-TTTAG-ATGTTTGTA-CAAAAATATGTAGGC 935 consensus_8765#1 CATCACTGCTTAATTAATATCACCATGAATTTANTATGTTTGTAACAAAAATATGTAGGC 412 **************** *********** **** ********* *************** consensus_8765#0 CGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATA 995 consensus_8765#1 CGTNTGTTNGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATNCTTGAAGTGTAAATA 472 *** **** *********************************** *************** consensus_8765#0 AACACATGAACAGCAATTGGATGGACGACGGCGGTGGAACAAAATGGCAGGGAAAATTGG 1055 consensus_8765#1 TACACATGAACAGCAATTGGATGGACGACGGCGGTGGAACAAAATGGCAGGGAAAATTGA 532 ********************************************************** consensus_8765#0 ATAAAAGCATTGTCGCTGCAACAACGAAGTTACCTATTGTAGCTTTNGGGATTTTGACTG 1115 consensus_8765#1 ANAAAAAAATTNCCNCTNCCACAACGAAGTTACCTATTGTAGCTTTGGG-ATTTTGACTG 591 * **** *** * ** * ************************** ** ********** consensus_8765#0 TNCAAATGAGGGTTTACACATGNAGGGGTAAATATTCTTTTGCGGNCCATTGACCCGCTC 1175 consensus_8765#1 TANAAATGAGGTTTTACACATGAAGAGATAAATATTCTTTTGCGGACCATTGAACCGCTC 651 * ******** ********** ** * ***************** ******* ****** consensus_8765#0 CTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1213 consensus_8765#1 CTCCTAAAAAAAAAAAAAAAAAAAAAAAAGNAAAAAAA 689 ***************************** ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||