These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8778#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1175 fasta sequence [ACTGCACGAAAAAAAAAGTTTCGCTCCCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTCTCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGC-GCGGCGCCGGTGTCCAGGATTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGGATATGCTCTCTCTGGCTTCATCAGTATATACTGCTCCATTATTTCAAACAGAATTTGATTCAGTTTATGTGCCTGAATATGGGGACGTGGGTAACAGTCAGGATGGCCTATTTCCTGGTTTATTCATTTCAGATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAATCTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATATCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTGGTGACCTG-CACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTGCTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGAAAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTGTGGCAGCTGGTGCTTTGATGGGCTTTGTTATAATAGGTCAGAGGTGGCAGCAGGACAAATTGCACCTTCATCATTTTNAGTTCAATATCGGCACTGAGGGCGTCAACAGAATCGTTGGAATATTCAGCCGTTGTAAGGATGCGCTTCCCAGTAGTCAGCAGCTCAAGTCTCTGCTTCCGACTCGCGTGCTCCCTCAAGAGCCAGTGAGTGCGTGAGTGGGACTCGCGTGGCAAATTTTGATGGCAGGCATCGCTATAATTGAGTTTTTGTTTTCTGATATGGTTGGAGGTAGCAGATTATTTTTTGTACTAGCGCA-ACCGTTTGATCTTTGTCCTTGTGTAAATTTGTGGGGGTATTGATCTTGCTCGTGGAA-CCAAAACATCATTATTTGTACTCTGTACTCCGTACGTACTAATTGTAAAAATACAGGAGAACAACACACGCGAACATCTAAAAAAAACTGCTTTTTTGCCGCTGATAATTGCTACTCTCTCTTTTTCACGTTAAAAAAAAAA] [+] EMBL AK062384 [ACTGCACGAAAAAAAAAGTTTCGCTCCCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTCTCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGC GCGGCGCCGGTGTCCAGGATTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGGATATGCTCTCTCTGGCTTCATCAGTATATACTGCTCCATTATTTCAAACAGAATTTGATTCAGTTTATGTGCCTGAATATGGGGACGTGGGTAACAGTCAGGATGGCCTATTTCCTGGTTTATTCATTTCAGATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAATCTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATATCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTGGTGACCTG CACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTGCTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGAAAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTGTGGCAGCTGGTGCTTTGATGGGCTTTGTTATAATAGGTCAGAGGTGGCAGCAGGACAAATTGCACCTTCATCATTTTCAGTTCAATATCGGCACTGAGGGCGTCAACAGAATCGTTGGAATATTCAGCCGTTGTAAGGATGCGCTTCCCAGTAGTCAGCAGCTCAAGTCTCTGCTTCCGACTCGCGTGCTCCCTCAAGAGCCAGTGAGTGCGTGAGTGGGACTCGCGTGGCAAATTTTGATGGCAGGCATCGCTATAATTGAGTTTTTGTTTTCTGATATGGTTGGAGGTAGCAGATTATTTTTTGTACTAGCGCA ACCGTTTGATCTTTGTCCTTGTGTAAATTTGTGGGGGTATTGATCTTGCTCGTGGAA CCAAAACATCATTATTTGTACTCTGTACTCCGTACGTACTAATTGTAAAAAT ] [+] EMBL AU101162 [ GAGGCGCGGCGAA CGCNGAGNCGCCGGTNTCCAGGATTTTATNCATNGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTNGCCAACGAATTGGATATNCTCTCTCTGGCTTCATCAGTATATACTGCTCCATTATTTCAAACAGAATTTGATTCAGTTTATGTNCCTGAATATGGGGACGTGGGTAACAGTCAGGATNGCCTATTTCCTGGTTTATTCATTTCAGATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAATCTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATATCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCA ] [+] EMBL AU101163 [ TGACCTGNAACTCTGCCAACGAAACTACTATCCCGANTTTAGAACCACCTGAAATACGTGCTGAACAAGAGAACGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGAAAAGG AATCAAATTGTCTNTCTCACCGTATGAAAGGAGTGACNACAGTCTGCACTATTGTGGCAGCTGGTGCTTTGATGGGCTTTGTTATNATAGGTCAGAGGTGGCAGCAGGACAAATTGCACCTTCATCATTTTNAGTTCAATATCGGCACTGAGGGCGTCAACAGAATCGTTGGAATATTCAGCCGTTGTAAGGATGCGCTTCCCAGTAGTCAGCAGCTCAAGTCTCTGCTTCCGACTCGCGTGCTCCCTCAAGAGCCAGTGAGTGCGTGAGTGGGACTCGCGTGGCAAATTTTGATGGCAGGCATCGCTATAATTGAGTTTTTGTTTTCTGATATGGTTGGAGGTAGCAGATTATTTTTTGTACTAGCGCA ACCGTTTGATCTTTGTCCTTGTGTAAATTTGTGGGGGTATTGATCTTGCTCGTGGAA CCAAAACATCATTATTTGTACTCTGTACTCCGTACGTACTAATTGTAAAAATACAGGAGAACAACACACGCGAACATCTAAAAAAAA ] [+] EMBL BI810406 [ caAGTTC ATATCGGCACTGAGGGCGGGAACAGAATCGTTGGAATATTCAGCCGTTGCAAGGATGCGCTTCCCAGCAGTCAGCAGCTCAAGTCTCTGCTTCCGACTCGCGTGCTCCCTCAAGAGCCATTGAGTGCGTGAGTGGGACTCGCGTGGCCAATTTTGATGGCAGGGATCGCTATAATTGAGTTTTTGTTTTCTGATATGGTTGGAGGTAGCAGATTCTTTTTTGTACTAGCGCACACCGTTTGATCTTTGTCCTTGTGTAAATTTGTGGGGGTATTGATCTTGCTCGTGCAACCCAAAACATCATTATTTGTACTCTGTACTCCGTACGTAGTAATTGTAAAAATACAGGAGAAC ACACACGCGAACATCTATCTGTACCTGCTTTTTTGCCGCTGATAATTGCTACTCTCTCTTTTTCACGTTAAAAAAAAAA] consensusID : consensus_8778#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [CCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTCTCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGCGCGGCGCCGGTGTCCAGGATTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGGATATGCTCTCTCTGGCTTCATCAATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAATCTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATATCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTGGTGACCTGCACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTGCTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGAAAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTGTGGCAGCTGGTGC] [+] EMBL CF334455 [CCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTCTCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGCGCGGCGCCGGTGTCCAGGATTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGGATATGCTCTCTCTGGCTTCATCAATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAATCTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATATCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTGGTGACCTGCACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTGCTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGAAAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTGTGGCAGCTGGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8778#0 ACTGCACGAAAAAAAAAGTTTCGCTCCCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTC 60 consensus_8778#1 --------------------------CCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTC 34 ********************************** consensus_8778#0 TCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGCGCGGCGCCGGTGTCCAGGA 120 consensus_8778#1 TCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGCGCGGCGCCGGTGTCCAGGA 94 ************************************************************ consensus_8778#0 TTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGG 180 consensus_8778#1 TTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGG 154 ************************************************************ consensus_8778#0 ATATGCTCTCTCTGGCTTCATCAGTATATACTGCTCCATTATTTCAAACAGAATTTGATT 240 consensus_8778#1 ATATGCTCTCTCTGGCTTCATCA------------------------------------- 177 *********************** consensus_8778#0 CAGTTTATGTGCCTGAATATGGGGACGTGGGTAACAGTCAGGATGGCCTATTTCCTGGTT 300 consensus_8778#1 ------------------------------------------------------------ consensus_8778#0 TATTCATTTCAGATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAAT 360 consensus_8778#1 ------------ATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAAT 225 ************************************************ consensus_8778#0 CTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATA 420 consensus_8778#1 CTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATA 285 ************************************************************ consensus_8778#0 TCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTG 480 consensus_8778#1 TCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTG 345 ************************************************************ consensus_8778#0 GTGACCTGCACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTG 540 consensus_8778#1 GTGACCTGCACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTG 405 ************************************************************ consensus_8778#0 CTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGA 600 consensus_8778#1 CTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGA 465 ************************************************************ consensus_8778#0 AAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTG 660 consensus_8778#1 AAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTG 525 ************************************************************ consensus_8778#0 TGGCAGCTGGTGCTTTGATGGGCTTTGTTATAATAGGTCAGAGGTGGCAGCAGGACAAAT 720 consensus_8778#1 TGGCAGCTGGTGC----------------------------------------------- 538 ************* consensus_8778#0 TGCACCTTCATCATTTTNAGTTCAATATCGGCACTGAGGGCGTCAACAGAATCGTTGGAA 780 consensus_8778#1 ------------------------------------------------------------ consensus_8778#0 TATTCAGCCGTTGTAAGGATGCGCTTCCCAGTAGTCAGCAGCTCAAGTCTCTGCTTCCGA 840 consensus_8778#1 ------------------------------------------------------------ consensus_8778#0 CTCGCGTGCTCCCTCAAGAGCCAGTGAGTGCGTGAGTGGGACTCGCGTGGCAAATTTTGA 900 consensus_8778#1 ------------------------------------------------------------ consensus_8778#0 TGGCAGGCATCGCTATAATTGAGTTTTTGTTTTCTGATATGGTTGGAGGTAGCAGATTAT 960 consensus_8778#1 ------------------------------------------------------------ consensus_8778#0 TTTTTGTACTAGCGCAACCGTTTGATCTTTGTCCTTGTGTAAATTTGTGGGGGTATTGAT 1020 consensus_8778#1 ------------------------------------------------------------ consensus_8778#0 CTTGCTCGTGGAACCAAAACATCATTATTTGTACTCTGTACTCCGTACGTACTAATTGTA 1080 consensus_8778#1 ------------------------------------------------------------ consensus_8778#0 AAAATACAGGAGAACAACACACGCGAACATCTAAAAAAAACTGCTTTTTTGCCGCTGATA 1140 consensus_8778#1 ------------------------------------------------------------ consensus_8778#0 ATTGCTACTCTCTCTTTTTCACGTTAAAAAAAAAA 1175 consensus_8778#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||