These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 687 fasta sequence [TTCCGCACCACACCGGAATCCGGCGGCGGCGGCGGCGGAGGGGAGCAGAGGCAGCACCACCAATGGCGGCGGCGGCGGCGTCGTCGTCCACCCCGGCGGCCGTCCGCGAGATGCAGCGCGACCTCGAGTCCCAGGCCAACGCCCTCAGCAAGATCCAGAAAGACA-TCTCCAAGAACCACCAGGTCCGCAAGCAGTACACCATCCAGGTCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGGAGCTGGT-GAATGACGAGGCGAACGTGTACAAGCTGATCGGGCCGGTGCTGGTCAAGCAGGATCTCGCGGAGGCGAAGGCCAACGTCAAG-AAGCGCAT-CGAG-TACATCTCCGCTGAGCTGAAGCGGATGGATCGAGCGCTCAAGGACTTGGAGGAAAAG-CA-GAACAGCACAGAAGGAATCGATCTTCAAGTTGCAACAG-AAGA-TG-CAGGCTGTACACAGCACAAGGCATAGGCCACACCTG-TT-TT-GCTGGTTATTTGCCCTCCACTTCTCCGTTTGGAATTAGCGTTTCTGGTGGAAAAAGGAGGGGAGAAAAGAAGAAAAGAGAAATGTCTGTGCTCTGGAATTTCCAGGTTTTCATGTTATTTGGAACTCTTTGGATGTAAAAGTTTGGCACTCGATACAGATTATTAGTGAATTACCATTAGCTTGTGATGGCTTAAAAAAAAAA] [+] EMBL AU108171 [TTCCGCACCACACCGGAATCCGGCGGCGGCGGCGGCGGAGGGGAGCAGAGGCAGCACCACCAATGGCGGCGGCGGCGGCGTCGTCGTCCACCCCGGCGGCCGTCCGCGAGATGCAGCGCGACCTCGAGTCCCAGGCCAACGCCCTCAGCAAGATCCAGAAAGACA TCTCCAAGAACCACCAGGTCCGCAAGCAGTACACCATCCAGGTCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGGAGCTGGT GAATGACGAGGCGAACGTGTACAAGCTGATCGGGCCGGTGCTGGTCAAGCAGGATCTCGCGGAGGCGAAGGCCAACGTCAAGAAAGCGCATCCGNG TACATCTCCGCTGAGCTGAAag ] [+] EMBL CA753107 [ CACCACACCGGAATCCGGCGGCGGCGGCGGCGGAGGGGAGCAGAGGCAGCACCACCAATGGCGGCGGCGGCGGCGTCGTCGTCCACCCCGGCGGCCGTCCGCGAGATGCAGCGCGACCTCGAGTCCCAGGCCAACGCCCTCAGCAAGATCCAGAAAGACA TCTCCAAGAACCACCAGGTCCGCAAGCAGTACACCATCCAGGTCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGGAGCTGGT GAATGACGAGGCGAACGTGTACAAGCTGATCGGGCCGGTGCTGGTCAAGCAGGATCTCGCGGAGGCGAAGGCCAACGTCAAG AAGCGCAT CGAG TACATCTCCGCTGAGCTGAAGCGGATGGATCGAGCGCTCAAGGACTTGGAGGAAAAG CA GAACAGCA AGAAGGAATCGATCTTCAAGTTGCAACAG AAGA TG CAGGCTGTACA GGCA AAGGCATAGGCCACACCTG TN TT GCTGG ] [+] EMBL BI801590 [ ACAGTCTCCAAGAATCACCAGGTCCGCAAGCAGTACACCATCCAGGTCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGGAGCTGGT GAATGACGAGGCGAACGTGTACAAGCTGATC GGCCGGT CTGGTCAAGCAGGATCTCGCGGAGGCGAAGGCC ACGTCAAG AAGCGCAT CGAG TACATCTCTGCTGAGTTGAAGCGGATGGATCGAGCGCTCAAGGACTTGGAGGAAAAG CA GAACAGCACAGAAGGAATCGATCTTCAAGTTGC ACAG AAGA TG CAGGCTGTACACAGCACAAGGCATAGGCCACACCTG TT TT GCTGGTTATTTGCCCTCCACTTCTCCGTTTGGAATTAGCGTTTCTGGTGGAAAAAGGAGGGGAGAAAAGAAGAAAAGAGAAATGTCTGTGCTCTGGAATTTCCAGGTTTTCATGTTATTTGGAACTCTTTGGATGTAAAAGTTTGGCACTCGATACAGATTATTAGTGAATTACCATTAGCTTGTGATGGCTTAAAAAAAAAA] [+] EMBL BI800077 [ CCAGGTCCGCAAGCAGTACACCATCCAGGGCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGGAGCTGGTGGAATGACGAGGCGAACGTG ACAAGCGGAGCGGGCCGGTGCTGG CAAGCAGGATCTCGCGGA GCGAAGGCCAACGTCAAG AAGCGCAT CGAGTTACATCTCGTCTGATTTGAAGCGGATGGATCGAGCGCTCAAGGACTTGGAGGAAAAGCCAGGACCAGCCAAGAAGGAATCGATCTTCAAGTTGCAACAGTAAGATTGTCAGGCTGTACACAGCATAAGGCATAGGCCACACCTGATTCTTCGCTGGTTATTTGCCCTCCACTTCCCCGTTTGGAATTAGCGTTTCTGGTGGAAAAAGGAGGGGAGAAAAGAAGAAAAGAGAAATGTCTGTGCTCTGGAATTTCCAGGTTTTCATGTTATTTGGAACTCTTTGGATGTAAAAGTTTGGCACTCGATAC ] consensusID : consensus_8785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [AGAGGNAATCGATCTTCAAGTTGCAACAGAAGATGCAGGCTTTACAGGCAAAAGGCTNTAGGCCACACCTGTTTTGCTGGTTAATTTTGCCCTCCACTTCTCCCGTTTGGAATTAGCGTTTCTGGTAGAAAAAAGAGGGGAGAACAGAAGGAAAGTGAAATGCATGTGCTCTGAAATTTCCAGGTTTTCATGTTATTTGGAACTTTTTGGATGTAAAAGTTTGGCACTCCATACAAGATTATTAGTGAATTATTAGCTTGTGGTGGCTTCTGTCCCTGGATTAGCTTTTCTTGTTTCTTTTCCTTTTGGGGCGTCCCAGACTCCCAGTATTAGCATAATTGATGTGATAATTGCATTTTTCCTGCCATCTGAGCTTGTCTGAACTCTCAATTGAAGGGTTCTCGTAAAGAAACTATATCAAGTCTGCTAAAAAAACAAAAA] [+] EMBL C98754 [AGAGGNAATCGATCTTCAAGTTGCAACAGAAGATGCAGGCTTTACAGGCAAAAGGCTNTAGGCCACACCTGTTTTGCTGGTTAATTTTGCCCTCCACTTCTCCCGTTTGGAATTAGCGTTTCTGGTAGAAAAAAGAGGGGAGAACAGAAGGAAAGTGAAATGCATGTGCTCTGAAATTTCCAGGTTTTCATGTTATTTGGAACTTTTTGGATGTAAAAGTTTGGCACTCCATACAAGATTATTAGTGAATTATTAGCTTGTGGTGGCTTCTGTCCCTGGATTAGCTTTTCTTGTTTCTTTTCCTTTTGGGGCGTCCCAGACTCCCAGTATTAGCATAATTGATGTGATAATTGCATTTTTCCTGCCATCTGAGCTTGTCTGAACTCTCAATTGAAGGGTTCTCGTAAAGAAACTATATCAAGTCTGCTAAAAAAACAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8785#0 TTCCGCACCACACCGGAATCCGGCGGCGGCGGCGGCGGAGGGGAGCAGAGGCAGCACCAC 60 consensus_8785#1 ------------------------------------------------------------ consensus_8785#0 CAATGGCGGCGGCGGCGGCGTCGTCGTCCACCCCGGCGGCCGTCCGCGAGATGCAGCGCG 120 consensus_8785#1 ------------------------------------------------------------ consensus_8785#0 ACCTCGAGTCCCAGGCCAACGCCCTCAGCAAGATCCAGAAAGACATCTCCAAGAACCACC 180 consensus_8785#1 ------------------------------------------------------------ consensus_8785#0 AGGTCCGCAAGCAGTACACCATCCAGGTCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGG 240 consensus_8785#1 ------------------------------------------------------------ consensus_8785#0 AGCTGGTGAATGACGAGGCGAACGTGTACAAGCTGATCGGGCCGGTGCTGGTCAAGCAGG 300 consensus_8785#1 ------------------------------------------------------------ consensus_8785#0 ATCTCGCGGAGGCGAAGGCCAACGTCAAGAAGCGCATCGAGTACATCTCCGCTGAGCTGA 360 consensus_8785#1 ------------------------------------------------------------ consensus_8785#0 AGCGGATGGATCGAGCGCTCAAGGACTTGGAGGAAAAGCAGAACAGCACAGAAGGAATCG 420 consensus_8785#1 -------------------------------------------------AGAGGNAATCG 11 *** * ***** consensus_8785#0 ATCTTCAAGTTGCAACAGAAGATGCAGGCTGTACACAGCACAAGGC-ATAGGCCACACCT 479 consensus_8785#1 ATCTTCAAGTTGCAACAGAAGATGCAGGCTTTACA-GGCAAAAGGCTNTAGGCCACACCT 70 ****************************** **** *** ***** ************ consensus_8785#0 GTTTTGCTGGTTA--TTTGCCCTCCACTTCTCC-GTTTGGAATTAGCGTTTCTGGTGGAA 536 consensus_8785#1 GTTTTGCTGGTTAATTTTGCCCTCCACTTCTCCCGTTTGGAATTAGCGTTTCTGGTAGAA 130 ************* ****************** ********************** *** consensus_8785#0 AAAGGAGGGGAGAAAAGAAGAAAAGAGAAATGTCTGTGCTCTGGAATTTCCAGGTTTTCA 596 consensus_8785#1 AAAAGAGGGGAGAACAGAAGGAAAGTGAAATGCATGTGCTCTGAAATTTCCAGGTTTTCA 190 *** ********** ***** **** ****** ********* **************** consensus_8785#0 TGTTATTTGGAACTCTTTGGATGTAAAAGTTTGGCACTCGATACA-GATTATTAGTGAAT 655 consensus_8785#1 TGTTATTTGGAACTTTTTGGATGTAAAAGTTTGGCACTCCATACAAGATTATTAGTGAAT 250 ************** ************************ ***** ************** consensus_8785#0 TACCATTAGCTTGTGATGGCTTAAAAAAAAAA---------------------------- 687 consensus_8785#1 T---ATTAGCTTGTGGTGGCTTCTGTCCCTGGATTAGCTTTTCTTGTTTCTTTTCCTTTT 307 * *********** ****** consensus_8785#0 ------------------------------------------------------------ consensus_8785#1 GGGGCGTCCCAGACTCCCAGTATTAGCATAATTGATGTGATAATTGCATTTTTCCTGCCA 367 consensus_8785#0 ------------------------------------------------------------ consensus_8785#1 TCTGAGCTTGTCTGAACTCTCAATTGAAGGGTTCTCGTAAAGAAACTATATCAAGTCTGC 427 consensus_8785#0 -------------- consensus_8785#1 TAAAAAAACAAAAA 441 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||