Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8810 cluster # 8810       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8810#0 length = 2769 sequences # 4  
consensus_8810#1 length = 621 sequences # 1  

consensusID : consensus_8810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2769
fasta sequence
                              [CGGCGACCACAGCAACAGGATGAAGCTGGTACAAAGGGAGGCGGAGAAGCTGGCGCTGCACAATGCAGGGTTTTTGGCCCAGAAGCGCCTCGCACGGGGGCTCCGCCTCAACTACACGGAGGCCGTCGCGCTCATCGCCGCCCAGATTCTTGAGTTTGTTCGTGATGGAGACAGAACTGTGACAGACTTGATGGACTTAGGAAAACAACTGCTGGGAAGGAGGCAAGTTCTTCCAGCTGTTCCACAACTTTTAGAAACTGTACAGGTTGAAGGAACATTTATGGATGGAACAAAACTAATTACTGTACATGATCCTATTTCTTCTGATGATGGAAATTTGGAGCTAGCACTGCATGGTTCTTTCCTCCCAGTACCTTCACTTGAAAAGTTTTCTTCGGTTGGTGTGGACGACTTTCCTGGCGAAGTACGTTTTTGCTCTGGTCACATAGTCCTCAATCTTCATCGCAGGGCTTTAACTCTGAAGGTTGTTAACAAGGCAGACAGACCTATTCAGATTGGGAGTCATTACCACTTCATAGAGGCCAATCCATACCTTGTTTTTGATAGACAAAGAGCTTATGGCATGAGACTGAACATACCAGCTGGCACAGCTGTCCGTTTTGAGCCAGGGGATGCAAAAACGGTTACACTTGTAAGCATTGGTGGTCGTAAAGTGATCAGGGGTGGAAATGGAATTGCTGATGGTGCTGTCAACAGATCTCAGCTTAATGAGGTAATGGAAAAGGTTATTGCAAATGGTTTTGGGCATGAAGATTATCCAGATTCAAGTGAAGGTATTATTGGTGATGGCACACATGACTACAGTGTTGATCATGAGAAATATGCAAGCATGTATGGGCCTACAACTGGTGACAAGATTAGACTTGGTGACACTGACCTTTTTGCGGAGATTGAAAAGGACTATGCCATCTATGGTGATGAGTGCATATTTGGAGGCGGAAAGGTTCTACGTGATGGAATGGGACAGTCGGCAGGGTATCCAGCCTCAGATTGCCTGGACACAGTTGTAACAAATGCTGTTGTGATTGACTATACAGGAATATACAAAGCTGACATTGGTATAAATGGTGGACTTATCGTTGCTATTGGGAAGGCTGGAAACCCTGATGTCATGGACATGGATGGTGTTAATGAAGAGATGATTGTGGGGGTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAATTGCAAGTGGCATCACAACATTGGTGGGAGGTGGAACTGGACCAGCACATGGAACTTGTGCCACAACTTGCACCCCTTCACCATCTCACATGAAACTAATGCTACAGTCCACTGATGAATTACCAATCAATATGGGATTCACAGGCAAGGGAAATACTACAAAACCTGATGGATTGGCTGAGATCATTAAGGCAGGAGCAATGGGCTTGAAGTTGCATGAAGATTGGGGAAGCACCCCAGCTGCGATAGATAACTGTTTATCTGTCGCAGAAGCTTTTGATATCCAGGTAAATATCCACACAGACACCTTAAATGAGTCAGGCTGTGTGGAGCATACAATTGCCGCATTTAAAGATAGGACAATACATACATATCATAGTGAAGGAGCAGGTGGTGGTCATGCTCCAGACATTATCAAAGTATGTGGAGTGAAAAATGTGTTACCCTCTTCAACAAATCCAACTCGGCCATTTACTTTGAACACTGTAGATGAGCACCTTGATATGCTGATGGTCTGCCATCACCTCGATAGAAATATCCCAGAAGATGTAGCATTTGCCGAGTCTAGAATTCGAGCTGAAACAATAGCTGCTGAGGATATCTTGCATGACATGGGAGCAATCAGTATCATATCATCCGATTCGCAGGCTATGGGGCGCATTGGAGAGGTGATTACTCGGACATGGCAAACTGCAAATAAGATGAAGAGACAGAGAGGTAGATTACCTATATCCAGTTCCCCCGATGCTGCAGAGGACAATGACAATTTCCGGATAAGAAGATACATAGCTAAATACACCATAAATCCTGCTATAGTGAATGGCTTTTCTGATTTTGTTGGCTCTGTTGAGGTGGGAAAATTAGCTGACCTTGTTATTTGGAAACCTTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGGTTATGATGCGACCTATGTTTGGTGCATTTGGAGGGGCTGGAAGTGCCAACTCTATAGCATTTGTGAGCAAGGCTGCTAAAGAAGCTGGCGTTGCAGTGCAGTACAAGCTGGGAAAGAGGGTGGAAGCTGTAGGTCGCGTTCGTGGTTTGACAAAGCTGAATATGAAGCTAAACGATGCACTTCCGAAAATTGATGTCGATCCTGAAACCTACACGGTTACTGCTGATGGAGAGGTTTTGAGATGTCAACCAACACCCACAGTACCACTATCTCGGAATTACTTCCTCTTTTAGACAACTTTAGTGAACCAGCCTTTCTTAATTAGGGTTAATGCATGCATTTGGTCTCTCTCTTGTATCCTTTTCAATAATATGACTTGTAAACTTAAAGCTTTTTATGTGAGTTTTCCTTCACAGGTGCAATAAGGATAACTTTTGGCCGTAATGCTTGATTTGAATACACTTGTGTTATCTTCATGCTTTATTATATAATCAAGTTTATAAAAAAAAGA]

[+] EMBL AK069176             [CGGCGACCACAGCAACAGGATGAAGCTGGTACAAAGGGAGGCGGAGAAGCTGGCGCTGCACAATGCAGGGTTTTTGGCCCAGAAGCGCCTCGCACGGGGGCTCCGCCTCAACTACACGGAGGCCGTCGCGCTCATCGCCGCCCAGATTCTTGAGTTTGTTCGTGATGGAGACAGAACTGTGACAGACTTGATGGACTTAGGAAAACAACTGCTGGGAAGGAGGCAAGTTCTTCCAGCTGTTCCACAACTTTTAGAAACTGTACAGGTTGAAGGAACATTTATGGATGGAACAAAACTAATTACTGTACATGATCCTATTTCTTCTGATGATGGAAATTTGGAGCTAGCACTGCATGGTTCTTTCCTCCCAGTACCTTCACTTGAAAAGTTTTCTTCGGTTGGTGTGGACGACTTTCCTGGCGAAGTACGTTTTTGCTCTGGTCACATAGTCCTCAATCTTCATCGCAGGGCTTTAACTCTGAAGGTTGTTAACAAGGCAGACAGACCTATTCAGATTGGGAGTCATTACCACTTCATAGAGGCCAATCCATACCTTGTTTTTGATAGACAAAGAGCTTATGGCATGAGACTGAACATACCAGCTGGCACAGCTGTCCGTTTTGAGCCAGGGGATGCAAAAACGGTTACACTTGTAAGCATTGGTGGTCGTAAAGTGATCAGGGGTGGAAATGGAATTGCTGATGGTGCTGTCAACAGATCTCAGCTTAATGAGGTAATGGAAAAGGTTATTGCAAATGGTTTTGGGCATGAAGATTATCCAGATTCAAGTGAAGGTATTATTGGTGATGGCACACATGACTACAGTGTTGATCATGAGAAATATGCAAGCATGTATGGGCCTACAACTGGTGACAAGATTAGACTTGGTGACACTGACCTTTTTGCGGAGATTGAAAAGGACTATGCCATCTATGGTGATGAGTGCATATTTGGAGGCGGAAAGGTTCTACGTGATGGAATGGGACAGTCGGCAGGGTATCCAGCCTCAGATTGCCTGGACACAGTTGTAACAAATGCTGTTGTGATTGACTATACAGGAATATACAAAGCTGACATTGGTATAAATGGTGGACTTATCGTTGCTATTGGGAAGGCTGGAAACCCTGATGTCATGGACATGGATGGTGTTAATGAAGAGATGATTGTGGGGGTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAATTGCAAGTGGCATCACAACATTGGTGGGAGGTGGAACTGGACCAGCACATGGAACTTGTGCCACAACTTGCACCCCTTCACCATCTCACATGAAACTAATGCTACAGTCCACTGATGAATTACCAATCAATATGGGATTCACAGGCAAGGGAAATACTACAAAACCTGATGGATTGGCTGAGATCATTAAGGCAGGAGCAATGGGCTTGAAGTTGCATGAAGATTGGGGAAGCACCCCAGCTGCGATAGATAACTGTTTATCTGTCGCAGAAGCTTTTGATATCCAGGTAAATATCCACACAGACACCTTAAATGAGTCAGGCTGTGTGGAGCATACAATTGCCGCATTTAAAGATAGGACAATACATACATATCATAGTGAAGGAGCAGGTGGTGGTCATGCTCCAGACATTATCAAAGTATGTGGAGTGAAAAATGTGTTACCCTCTTCAACAAATCCAACTCGGCCATTTACTTTGAACACTGTAGATGAGCACCTTGATATGCTGATGGTCTGCCATCACCTCGATAGAAATATCCCAGAAGATGTAGCATTTGCCGAGTCTAGAATTCGAGCTGAAACAATAGCTGCTGAGGATATCTTGCATGACATGGGAGCAATCAGTATCATATCATCCGATTCGCAGGCTATGGGGCGCATTGGAGAGGTGATTACTCGGACATGGCAAACTGCAAATAAGATGAAGAGACAGAGAGGTAGATTACCTATATCCAGTTCCCCCGATGCTGCAGAGGACAATGACAATTTCCGGATAAGAAGATACATAGCTAAATACACCATAAATCCTGCTATAGTGAATGGCTTTTCTGATTTTGTTGGCTCTGTTGAGGTGGGAAAATTAGCTGACCTTGTTATTTGGAAACCTTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGGTTATGATGCGACCTATGTTTGGTGCATTTGGAGGGGCTGGAAGTGCCAACTCTATAGCATTTGTGAGCAAGGCTGCTAAAGAAGCTGGCGTTGCAGTGCAGTACAAGCTGGGAAAGAGGGTGGAAGCTGTAGGTCGCGTTCGTGGTTTGACAAAGCTGAATATGAAACTAAACGATGCACTTCCGAAAATTGATGTCGATCCTGAAACCTACACGGTTACTGCTGATGGAGAGGTTTTGAGATGTCAACCAACACCCACAGTACCACTATCTCGGAATTACTTCCTCTTTTAGACAACTTTAGTGAACCAGCCTTTCTTAATTAGGGTTAATGCATGCATTTGGTCTCTCTCTTGTATCCTTTTCAATAATATGACTTGTAAACTTAAAGCTTTTTATGTGAGTTTTCCTTCACAGGTGCAATAAGGATAAC                                                                               ]
[+] EMBL AB075476             [                     GAAGCTGGAACAAAGGGAGGCGGAGAAGCTGGCGCTGCACAATGCAGGGTTTTTGGCCCAGAAGCGCCTCGCACGGGGGCTCCGCCTCAACTACACGGAGGCCGTCGCGCTCATCGCCGCCCAGATTCTTGAGTTTGTTCGTGATGGAGACAGAACTGTGACAGACTTGATGGACTTAGGAAAACAACTGCTGGGAAGGAGGCAAGTTCTTCCAGCTGTTCCACACCTTTTAGAAACTGTACAGGTTGAAGGAACATTTATGGATGGAACAAAACTAATTACTGTACATGATCCTATTTCTTCTGATGATGGAAATTTGGAGCTAGCACTGCATGGTTCTTTCCTCCCAGTACCTTCACTTGAAAAGTTTTCTTCGGTTGGTGTGGACGACTTTCCTGGCGAAGTACGTTTTTGCTCTGGTCACATAGTCCTCAATCTTCATCGCAGGGCTTTAACTCTGAAGGTTGTTAACAAGGCAGACAGACCTATTCAGATTGGGAGTCATTACCACTTCATAGAGGCCAATCCATACCTTGTTTTTGATAGACAAAGAGCTTATGGCATGAGACTGAACATACCAGCTGGTACAGCTGTCCGTTTTGAGCCAGGGGATGCAAAAACGGTTACACTTGTAAGCATTGGTGGTCGTAAAGTGATCAGGGGTGGAAATGGAATTGCTGATGGTGCTGTCAACAGATCTCAGCTTAATGAGGTAATGGAAAAGGTTATTGCAAATGGTTTTGGGCATGAAGATTATCCAGATTCAAGTGAAGGTATTATTGGTGATGGCACACATGACTACAGTGTTGATCATGAGAAATATGCAAGCATGTATGGGCCTACAACTGGTGACAAGATTAGACTTGGTGACACTGACCTTTTTGCGGAGATTGAAAAGGACTATGCCATCTATGGTGATGAGTGCATATTTGGAGGCGGAAAGGTTCTACGTGATGGAATGGGACAGTCGGCAGGGTATCCAGCCTCAGATTGCCTGGACACAGTTGTAACAAATGCTGTTGTGATTGACTATACAGGAATATACAAAGCTGACATTGGTATAAATGGTGGACTTATCGTTGCTATTGGGAAGGCTGGAAACCCTGATGTCATGGACATGGATGGTGTTAATGAAGAGATGATTGTGGGGGTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAATTGCAAGTGGCATCACAACATTGGTGGGAGGTGGAACTGGACCAGCACATGGAACTTGTGCCACAACTTGCACCCCTTCACCATCTCACATGAAACTAATGCTACAGTCCACTGATGAATTACCAATCAATATGGGATTCACAGGCAAGGGAAATACTACAAAACCTGATGGATTGGCTGAGATCATTAAGGCAGGAGCAATGGGCTTGAAGTTGCATGAAGATTGGGGAAGCACCCCAGCTGCGATAGATAACTGTTTATCTGTCGCAGAAGCTTTTGATATCCAGGTAAATATCCACACAGACACCTTAAATGAGTCAGGCTGTGTGGAGCATACAATTGCCGCATTTAAAGATAGGACAATACATACATATCATAGTGAAGGAGCAGGTGGTGGTCATGCTCCAGACATTATCAAAGTATGTGGAGTGAAAAATGTGTTACCCTCTTCAACAAATCCAACTCGGCCATTTACTTTGAACACTGTAGATGAGCACCTTGATATGCTGATGGTCTGCCATCACCTCGATAGAAATATCCCAGAAGATGTAGCATTTGCCGAGTCTAGAATTCGAGCTGAAACAATAGCTGCTGAGGATATCTTGCATGACATGGGAGCAATCAGTATCATATCATCCGATTCGCAGGCTATGGGGCGCATTGGAGAGGTGATTACTCGGACATGGCAAACTGCAAATAAGATGAAGAGACAGAGAGGTAGATTACCTATATCCAGTTCCCCCGATGCTGCAGAGGACAATGACAATTTCCGGATAAGAAGATACATAGCTAAATACACCATAAATCCTGCTATAGTGAATGGCTTTTCTGATTTTGTTGGCTCTGTTGAGGTGGGAAAATTAGCTGACCTTGTTATTTGGAAACCTTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGGTTATGATGCGACCTATGTTTGGTGCATTTGGAGGGGCTGGAAGTGCCAACTCTATAGCATTTGTGAGCAAGGCTGCTAAAGAAGCTGGCGTTGCAGTGCAGTACAAGCTGGGAAAGAGGGTGGAAGCTGTAGGTCGCGTTCGTGGTTTGACAAAGCTGAATATGAAGCTAAACGATGCACTTCCGAAAATTGATGTCGATCCTGAAACCTACACGGTTACTGCTGATGGAGAGGTTTTGAGATGTCAACCAACACCCACAGTACCACTATCTCGGAATTACTTCCTCTTTTAGACAACTTTAGTGAACCAGCCTTTCTTAATTAGGGTTAATGC                                                                                                                                                                                 ]
[+] EMBL CB621674             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCGCCTTGAGACAGGGGATGCAAAAACGGTTACACTTGTAAGCATTGGTGGTCGTAAAGTGATCAGGGGTGGAAATGGAATTGCTGATGGTGCTGTCAACAGATCTCAGCTTAATGAGGTAATGGAAAAGGTTATTGCAAATGGTTTTGGGCATGAAGATTATCCAGATTCAAGTGAAGGTATTATTGGTGATGGCACACATGACTACAGTGTTGATCATGAGAAATATGCAAGCATGTATGGGCCTACAACTGGTGACAAGATTAGACTTGGTGACACTGACCTTTTTGCGGAGATTGAAAAGGACTATGCCATCTATGGTGATGAGTGCATATTTGGAGGCGGAAAGGTTCTACGTGACGGAATGGGACAGTCGGCAGGGTATCCAGCCTCAGATTGCCTGGACACAGTTGTAACAAATGCTGTTGTGATTGACTATACAGGAATATACAAAGCTGACATTGGTATAAATGGTGGACTTATCGTTGCTATTGGGAAGGCTGGAAACCCTGATGTCATGGACATGGATGGTGTTAATGAAGAGATGATTGTGGGGGTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAATTGGCAGAAGAGGCAATTGCAAGTGGCATCACAACATTGGTGGGAGGTGGAACTGGACCAGCACATGGAACTTGTGCCACAACTTGCACCCCTTCACCATCTCACATGAAACTAATGCTACAGTCCACTGATGAATTACNCATCAATATGGGATTCACAGGCAAGGGAAATACTACAAAACCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB621675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACTGCAAATAAGATGAAGAGACAGAGAGGTAGATTACCTATATCCAGTTCCCCCGATGCTGCAGAGGACAATGACAATTTCCGGATAAGAAGATACATAGCTAAATACACCATAAATCCTGCTATAGTGAATGGCTTTTCTGATTTTGTTGGCTCTGTTGAGGTGGGAAAATTAGCTGACCTTGTTATTTGGAAACCTTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGGTTATGATGCGACCTATGTTTGGTGCATTTGGAGGGGCTGGAAGTGCCAACTCTATAGCATTTGTGAGCAAGGCTGCTAAAGAAGCTGGCGTTGCAGTGCAGTACAAGCTGGGAAAGAGGGTGGAAGCTGTAGGTCGCGTTCGTGGTTTGACAAAGCTGAATATGAAGCTAAACGATGCACTTCCGAAAATTGATGTCGATCCTGAAACCTACACGGTTACTGCTGATGGAGAGGTTTTGAGATGTCAACCAACACCCACAGTACCACTATCTCGGAATTACTTCCTCTTTTAGACAACTTTAGTGAACCAGCCTTTCTTAATTAGGGTTAATGCATGCATTTGGTCTCTCTCTTGTATCCTTTTCAATAATATGACTTGTAAACTTAAAGCTTTTTATGGGAGTTTTCCTTCACAGGTGCAATAAGGATAACTTTTGGCCGTAATGCTTGATTTGAATACACTTGTGTTATCTTCATGCTTTATTATATAATCAAGTTTATAAAAAAAAGA]


>consensus_8810#0 CGGCGACCACAGCAACAGGATGAAGCTGGTACAAAGGGAGGCGGAGAAGCTGGCGCTGCA CAATGCAGGGTTTTTGGCCCAGAAGCGCCTCGCACGGGGGCTCCGCCTCAACTACACGGA GGCCGTCGCGCTCATCGCCGCCCAGATTCTTGAGTTTGTTCGTGATGGAGACAGAACTGT GACAGACTTGATGGACTTAGGAAAACAACTGCTGGGAAGGAGGCAAGTTCTTCCAGCTGT TCCACAACTTTTAGAAACTGTACAGGTTGAAGGAACATTTATGGATGGAACAAAACTAAT TACTGTACATGATCCTATTTCTTCTGATGATGGAAATTTGGAGCTAGCACTGCATGGTTC TTTCCTCCCAGTACCTTCACTTGAAAAGTTTTCTTCGGTTGGTGTGGACGACTTTCCTGG CGAAGTACGTTTTTGCTCTGGTCACATAGTCCTCAATCTTCATCGCAGGGCTTTAACTCT GAAGGTTGTTAACAAGGCAGACAGACCTATTCAGATTGGGAGTCATTACCACTTCATAGA GGCCAATCCATACCTTGTTTTTGATAGACAAAGAGCTTATGGCATGAGACTGAACATACC AGCTGGCACAGCTGTCCGTTTTGAGCCAGGGGATGCAAAAACGGTTACACTTGTAAGCAT TGGTGGTCGTAAAGTGATCAGGGGTGGAAATGGAATTGCTGATGGTGCTGTCAACAGATC TCAGCTTAATGAGGTAATGGAAAAGGTTATTGCAAATGGTTTTGGGCATGAAGATTATCC AGATTCAAGTGAAGGTATTATTGGTGATGGCACACATGACTACAGTGTTGATCATGAGAA ATATGCAAGCATGTATGGGCCTACAACTGGTGACAAGATTAGACTTGGTGACACTGACCT TTTTGCGGAGATTGAAAAGGACTATGCCATCTATGGTGATGAGTGCATATTTGGAGGCGG AAAGGTTCTACGTGATGGAATGGGACAGTCGGCAGGGTATCCAGCCTCAGATTGCCTGGA CACAGTTGTAACAAATGCTGTTGTGATTGACTATACAGGAATATACAAAGCTGACATTGG TATAAATGGTGGACTTATCGTTGCTATTGGGAAGGCTGGAAACCCTGATGTCATGGACAT GGATGGTGTTAATGAAGAGATGATTGTGGGGGTTAATACTGAAGTTATTGCTGCTGAAGG CATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGC AGAAGAGGCAATTGCAAGTGGCATCACAACATTGGTGGGAGGTGGAACTGGACCAGCACA TGGAACTTGTGCCACAACTTGCACCCCTTCACCATCTCACATGAAACTAATGCTACAGTC CACTGATGAATTACCAATCAATATGGGATTCACAGGCAAGGGAAATACTACAAAACCTGA TGGATTGGCTGAGATCATTAAGGCAGGAGCAATGGGCTTGAAGTTGCATGAAGATTGGGG AAGCACCCCAGCTGCGATAGATAACTGTTTATCTGTCGCAGAAGCTTTTGATATCCAGGT AAATATCCACACAGACACCTTAAATGAGTCAGGCTGTGTGGAGCATACAATTGCCGCATT TAAAGATAGGACAATACATACATATCATAGTGAAGGAGCAGGTGGTGGTCATGCTCCAGA CATTATCAAAGTATGTGGAGTGAAAAATGTGTTACCCTCTTCAACAAATCCAACTCGGCC ATTTACTTTGAACACTGTAGATGAGCACCTTGATATGCTGATGGTCTGCCATCACCTCGA TAGAAATATCCCAGAAGATGTAGCATTTGCCGAGTCTAGAATTCGAGCTGAAACAATAGC TGCTGAGGATATCTTGCATGACATGGGAGCAATCAGTATCATATCATCCGATTCGCAGGC TATGGGGCGCATTGGAGAGGTGATTACTCGGACATGGCAAACTGCAAATAAGATGAAGAG ACAGAGAGGTAGATTACCTATATCCAGTTCCCCCGATGCTGCAGAGGACAATGACAATTT CCGGATAAGAAGATACATAGCTAAATACACCATAAATCCTGCTATAGTGAATGGCTTTTC TGATTTTGTTGGCTCTGTTGAGGTGGGAAAATTAGCTGACCTTGTTATTTGGAAACCTTC TTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATAT GGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGGTTATGATGCGACCTATGTTTGG TGCATTTGGAGGGGCTGGAAGTGCCAACTCTATAGCATTTGTGAGCAAGGCTGCTAAAGA AGCTGGCGTTGCAGTGCAGTACAAGCTGGGAAAGAGGGTGGAAGCTGTAGGTCGCGTTCG TGGTTTGACAAAGCTGAATATGAAGCTAAACGATGCACTTCCGAAAATTGATGTCGATCC TGAAACCTACACGGTTACTGCTGATGGAGAGGTTTTGAGATGTCAACCAACACCCACAGT ACCACTATCTCGGAATTACTTCCTCTTTTAGACAACTTTAGTGAACCAGCCTTTCTTAAT TAGGGTTAATGCATGCATTTGGTCTCTCTCTTGTATCCTTTTCAATAATATGACTTGTAA ACTTAAAGCTTTTTATGTGAGTTTTCCTTCACAGGTGCAATAAGGATAACTTTTGGCCGT AATGCTTGATTTGAATACACTTGTGTTATCTTCATGCTTTATTATATAATCAAGTTTATA AAAAAAAGA



consensusID : consensus_8810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence
                              [GGGGGGGAAAAACTTGCTAACTGATCATACTTCTCTTCAGTTTTTCTATTCATAATTTTTTTGTTTTTTTTTCAGGTGGGAAAATTAGCTGACCTTGTTATTTGGAAACCTTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGGTTATGATGCGACCTATGTTTGGTGCATTTGGAGGGGCTGGAAGTGCCAACTCTATAGCATTTGTGAGCAAGGCTGCTAAAGAAGCTGGCGTTGCAGTGCAGTACAAGCTGGGAAAGAGGGTGGAAGCTGTAGGTCGCGTTCGTGGTTTGACAAAGCTGAATATGAAGCTAAACGATGCACTTCCGAAAATTGATGTCGATCCTGAAACCTACACGGTTACTGCTGATGGAGAGGTTTTGAGATGTCAACCAACACCCACAGTACCACTATCTCGGAATTACTTCCTCTTTTAGACAACTTTAGTGAACCAGCCTTTCTTAATTAGGGTTAATGCATGCATTTGGTCTCTCTCTTGTATCCTTTTCAATAATATGACTTGTAAACTTAAAGCTTTTTATGGGAGTTTTCCT]

[+] EMBL CA764290             [GGGGGGGAAAAACTTGCTAACTGATCATACTTCTCTTCAGTTTTTCTATTCATAATTTTTTTGTTTTTTTTTCAGGTGGGAAAATTAGCTGACCTTGTTATTTGGAAACCTTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGGTTATGATGCGACCTATGTTTGGTGCATTTGGAGGGGCTGGAAGTGCCAACTCTATAGCATTTGTGAGCAAGGCTGCTAAAGAAGCTGGCGTTGCAGTGCAGTACAAGCTGGGAAAGAGGGTGGAAGCTGTAGGTCGCGTTCGTGGTTTGACAAAGCTGAATATGAAGCTAAACGATGCACTTCCGAAAATTGATGTCGATCCTGAAACCTACACGGTTACTGCTGATGGAGAGGTTTTGAGATGTCAACCAACACCCACAGTACCACTATCTCGGAATTACTTCCTCTTTTAGACAACTTTAGTGAACCAGCCTTTCTTAATTAGGGTTAATGCATGCATTTGGTCTCTCTCTTGTATCCTTTTCAATAATATGACTTGTAAACTTAAAGCTTTTTATGGGAGTTTTCCT]


>consensus_8810#1 GGGGGGGAAAAACTTGCTAACTGATCATACTTCTCTTCAGTTTTTCTATTCATAATTTTT TTGTTTTTTTTTCAGGTGGGAAAATTAGCTGACCTTGTTATTTGGAAACCTTCTTTCTTT GGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGAT CCAAATGCTAGCATTCCAACACCTGAACCGGTTATGATGCGACCTATGTTTGGTGCATTT GGAGGGGCTGGAAGTGCCAACTCTATAGCATTTGTGAGCAAGGCTGCTAAAGAAGCTGGC GTTGCAGTGCAGTACAAGCTGGGAAAGAGGGTGGAAGCTGTAGGTCGCGTTCGTGGTTTG ACAAAGCTGAATATGAAGCTAAACGATGCACTTCCGAAAATTGATGTCGATCCTGAAACC TACACGGTTACTGCTGATGGAGAGGTTTTGAGATGTCAACCAACACCCACAGTACCACTA TCTCGGAATTACTTCCTCTTTTAGACAACTTTAGTGAACCAGCCTTTCTTAATTAGGGTT AATGCATGCATTTGGTCTCTCTCTTGTATCCTTTTCAATAATATGACTTGTAAACTTAAA GCTTTTTATGGGAGTTTTCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8810#0      CGGCGACCACAGCAACAGGATGAAGCTGGTACAAAGGGAGGCGGAGAAGCTGGCGCTGCA 60
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      CAATGCAGGGTTTTTGGCCCAGAAGCGCCTCGCACGGGGGCTCCGCCTCAACTACACGGA 120
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      GGCCGTCGCGCTCATCGCCGCCCAGATTCTTGAGTTTGTTCGTGATGGAGACAGAACTGT 180
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      GACAGACTTGATGGACTTAGGAAAACAACTGCTGGGAAGGAGGCAAGTTCTTCCAGCTGT 240
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TCCACAACTTTTAGAAACTGTACAGGTTGAAGGAACATTTATGGATGGAACAAAACTAAT 300
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TACTGTACATGATCCTATTTCTTCTGATGATGGAAATTTGGAGCTAGCACTGCATGGTTC 360
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TTTCCTCCCAGTACCTTCACTTGAAAAGTTTTCTTCGGTTGGTGTGGACGACTTTCCTGG 420
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      CGAAGTACGTTTTTGCTCTGGTCACATAGTCCTCAATCTTCATCGCAGGGCTTTAACTCT 480
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      GAAGGTTGTTAACAAGGCAGACAGACCTATTCAGATTGGGAGTCATTACCACTTCATAGA 540
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      GGCCAATCCATACCTTGTTTTTGATAGACAAAGAGCTTATGGCATGAGACTGAACATACC 600
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      AGCTGGCACAGCTGTCCGTTTTGAGCCAGGGGATGCAAAAACGGTTACACTTGTAAGCAT 660
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TGGTGGTCGTAAAGTGATCAGGGGTGGAAATGGAATTGCTGATGGTGCTGTCAACAGATC 720
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TCAGCTTAATGAGGTAATGGAAAAGGTTATTGCAAATGGTTTTGGGCATGAAGATTATCC 780
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      AGATTCAAGTGAAGGTATTATTGGTGATGGCACACATGACTACAGTGTTGATCATGAGAA 840
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      ATATGCAAGCATGTATGGGCCTACAACTGGTGACAAGATTAGACTTGGTGACACTGACCT 900
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TTTTGCGGAGATTGAAAAGGACTATGCCATCTATGGTGATGAGTGCATATTTGGAGGCGG 960
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      AAAGGTTCTACGTGATGGAATGGGACAGTCGGCAGGGTATCCAGCCTCAGATTGCCTGGA 1020
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      CACAGTTGTAACAAATGCTGTTGTGATTGACTATACAGGAATATACAAAGCTGACATTGG 1080
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TATAAATGGTGGACTTATCGTTGCTATTGGGAAGGCTGGAAACCCTGATGTCATGGACAT 1140
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      GGATGGTGTTAATGAAGAGATGATTGTGGGGGTTAATACTGAAGTTATTGCTGCTGAAGG 1200
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      CATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGC 1260
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      AGAAGAGGCAATTGCAAGTGGCATCACAACATTGGTGGGAGGTGGAACTGGACCAGCACA 1320
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TGGAACTTGTGCCACAACTTGCACCCCTTCACCATCTCACATGAAACTAATGCTACAGTC 1380
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      CACTGATGAATTACCAATCAATATGGGATTCACAGGCAAGGGAAATACTACAAAACCTGA 1440
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TGGATTGGCTGAGATCATTAAGGCAGGAGCAATGGGCTTGAAGTTGCATGAAGATTGGGG 1500
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      AAGCACCCCAGCTGCGATAGATAACTGTTTATCTGTCGCAGAAGCTTTTGATATCCAGGT 1560
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      AAATATCCACACAGACACCTTAAATGAGTCAGGCTGTGTGGAGCATACAATTGCCGCATT 1620
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TAAAGATAGGACAATACATACATATCATAGTGAAGGAGCAGGTGGTGGTCATGCTCCAGA 1680
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      CATTATCAAAGTATGTGGAGTGAAAAATGTGTTACCCTCTTCAACAAATCCAACTCGGCC 1740
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      ATTTACTTTGAACACTGTAGATGAGCACCTTGATATGCTGATGGTCTGCCATCACCTCGA 1800
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TAGAAATATCCCAGAAGATGTAGCATTTGCCGAGTCTAGAATTCGAGCTGAAACAATAGC 1860
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TGCTGAGGATATCTTGCATGACATGGGAGCAATCAGTATCATATCATCCGATTCGCAGGC 1920
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TATGGGGCGCATTGGAGAGGTGATTACTCGGACATGGCAAACTGCAAATAAGATGAAGAG 1980
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      ACAGAGAGGTAGATTACCTATATCCAGTTCCCCCGATGCTGCAGAGGACAATGACAATTT 2040
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      CCGGATAAGAAGATACATAGCTAAATACACCATAAATCCTGCTATAGTGAATGGCTTTTC 2100
consensus_8810#1      ---GGGGGGGAAAAAC-TTGCTAACTG-ATCATACTTCT--CTTCAGTTT-TTCTATTCA 52
                         *    * * * ** * ***** *  * ****  **   **  ***   *    **  

consensus_8810#0      TGATTTTGTTGGCTCTGTTG-AGGTGGGAAAATTAGCTGACCTTGTTATTTGGAAACCTT 2159
consensus_8810#1      TAATTTTTTTGTTTTTTTTTCAGGTGGGAAAATTAGCTGACCTTGTTATTTGGAAACCTT 112
                      * ***** ***  * * **  ***************************************

consensus_8810#0      CTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATA 2219
consensus_8810#1      CTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATA 172
                      ************************************************************

consensus_8810#0      TGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGGTTATGATGCGACCTATGTTTG 2279
consensus_8810#1      TGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGGTTATGATGCGACCTATGTTTG 232
                      ************************************************************

consensus_8810#0      GTGCATTTGGAGGGGCTGGAAGTGCCAACTCTATAGCATTTGTGAGCAAGGCTGCTAAAG 2339
consensus_8810#1      GTGCATTTGGAGGGGCTGGAAGTGCCAACTCTATAGCATTTGTGAGCAAGGCTGCTAAAG 292
                      ************************************************************

consensus_8810#0      AAGCTGGCGTTGCAGTGCAGTACAAGCTGGGAAAGAGGGTGGAAGCTGTAGGTCGCGTTC 2399
consensus_8810#1      AAGCTGGCGTTGCAGTGCAGTACAAGCTGGGAAAGAGGGTGGAAGCTGTAGGTCGCGTTC 352
                      ************************************************************

consensus_8810#0      GTGGTTTGACAAAGCTGAATATGAAGCTAAACGATGCACTTCCGAAAATTGATGTCGATC 2459
consensus_8810#1      GTGGTTTGACAAAGCTGAATATGAAGCTAAACGATGCACTTCCGAAAATTGATGTCGATC 412
                      ************************************************************

consensus_8810#0      CTGAAACCTACACGGTTACTGCTGATGGAGAGGTTTTGAGATGTCAACCAACACCCACAG 2519
consensus_8810#1      CTGAAACCTACACGGTTACTGCTGATGGAGAGGTTTTGAGATGTCAACCAACACCCACAG 472
                      ************************************************************

consensus_8810#0      TACCACTATCTCGGAATTACTTCCTCTTTTAGACAACTTTAGTGAACCAGCCTTTCTTAA 2579
consensus_8810#1      TACCACTATCTCGGAATTACTTCCTCTTTTAGACAACTTTAGTGAACCAGCCTTTCTTAA 532
                      ************************************************************

consensus_8810#0      TTAGGGTTAATGCATGCATTTGGTCTCTCTCTTGTATCCTTTTCAATAATATGACTTGTA 2639
consensus_8810#1      TTAGGGTTAATGCATGCATTTGGTCTCTCTCTTGTATCCTTTTCAATAATATGACTTGTA 592
                      ************************************************************

consensus_8810#0      AACTTAAAGCTTTTTATGTGAGTTTTCCTTCACAGGTGCAATAAGGATAACTTTTGGCCG 2699
consensus_8810#1      AACTTAAAGCTTTTTATGGGAGTTTTCCT------------------------------- 621
                      ****************** **********                               

consensus_8810#0      TAATGCTTGATTTGAATACACTTGTGTTATCTTCATGCTTTATTATATAATCAAGTTTAT 2759
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      AAAAAAAAGA 2769
consensus_8810#1      ----------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)