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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8823#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1346 fasta sequence
[TTTTTTTTTTTTTTTGTGTGGCTTGGTAGCCGTGAAATGGAATGAAATTTGCCCTTAAATGTCATTGCGTCTACAAAAACCAAAAAAAGAAAAAGAAAAATTCCTCGTCTAAGCATTTCAAAACAAAATTTTCCAGTTGAACACTCAGTTTCCTTAGCTTTCAAAGAAAGAAGATCGAAGAGATCCTAAAGGATCATCTTCTCGAGAGACCCCGGGTAGAGCAGAGCATCATCATCCTGGACAGTCTCGATGAGCCGAAAGCCATGAGCCCGTTACGTCTCTTAAAAACCTGCTTGCTCACTCCCAAACCACCATTGCTAGGCTTTACAGCATCGGCTGCTGCTGCTGCTTTCCTCACGAACAACGATATGAAGAAGCCCTCCAGGCCGTCCTCCGGGTCCGTCCGAAGCAGATGCTCAGATCCTTCAAAGACGGGGAGACCACGGCGTCGCCATTGAGGGAATGGAGTAGCGAGCTCGAATCCGAGCGATGACGCCAATGGCAGGACGGAGCTCACGACGTCCTCGTTCTCAGCTTGGTGGATTGAGCAGGTGCTGTAGACCACTCTCTCCACAGAGGGGAATGACAGAGCATGTG-AGAGCGCTTTCCTCTGGAAGGCGGAGAG-TTTCCTTATCCTT-GAACTCGTACTTGCATCATCCTGATTACCTCTTGAGTGCGAA-GGGAG-CAAATGGTCAAGTCTCTCTGTAGAGATTCCGGAACCAGAGCAAGAGGGATCTAATAGAATA-GCTCGGACCTCGGCATATGATGGA-TCATTGCTATCGATATCCAAAAAGTCACCATTGATTGTTTCAATATTGTTTGCTCCGGATCTTCGGATAGTATTTTGCAAAGTCTTGGTCCTCTCTTTATTAAGTTCACAAGCTGTAATAC-TCCCCTCTCCATTCATGAGTGCAGCAAGATGGACTGTTTTATTCCCTGGAGCCGCACATGCATCAATAACCTTCCAGCCTGGCTCAGGGCATAATGCAACTGCCACCATACAACTTGCTTTCCCTTGTAAAAATACTTTTCCTTCTGAGACCAAATGGTGGTTATGCAAATCAGTTCCAGGTGGGAGCACCAACAAGTCCGGAACCAATTCGTCTTTATCAACCTTGTGTATTTTGTTCAGTTCTTCGATGACAGAATCTGTACTGGTCCTGAGTGTGTTAACACGAAGAAACCTGGGTTTTGGTTTGACTGTCCTTTTCTTGCTTACTAAGTCTTCAACACTACGAACCTTCCTTCTAATACACATTTTCTCAAGAGCAGCCATAATAGTATCCTTATGTAACATAATTAACTGTTCAACGGATCCAGAAGCTGCTGTCTCCTGAGCAAAGAGA]
[-] EMBL C98007 [TTTTTTTTTTTTTTTGTGTGGCTTGGTAGCCGTGAAATGGAATGAAATTTGCCCTTAAATGTCATTGCGTCTACAAAAACCAAAAAAAGAAAAAGAAAAATTCCTCGTCTAAGCATTTCAAAACAAAATTTTCCAGTTGAACACTCAGTTTCCTTAGCTTTCAAAGAAAGAAGATCGAAGAGATCCTAAAGGATCATCTTCTCGAGAGACCCCGGGTAGAGCAGAGCATCATCATCCTGGACAGTCTCGATGAGCCGAAAGCCATGAGCCCGTTACGTCTCTTAAAAACCTGCTTGCTCACTCCCAAACCACCATTGCTAGGCTTTACAGCATCGGCTGCTGCTGCTGCTTTCCTCACGAACAACGATATGAAGAAGCCCTCCAGGCCGTCCTCCGGGTCCGTCCGAAGCAGATGCTCAGATCCTTCAAAGACGGGGAGACCACGGCGTCGCCATTGAGGGAATGGAGTAGCGAGCTCGAATCCGAGCGATGACGCCAATGGCAGGACGGAGCTCACGACGTCCTCGTTCTCAGCTTGGTGGATTGAGCAGGTGCTGTAGACCACTCTCTCCACAGAGGGGAATGACAGAGCATGTGAAGAGCGCTTTCCTCTGGAAGGCGGAGAGTTTTCCTTATCCTTGGAACTCGTAATTGCATCATCCTGATTACCTCTTGAGTGCGAANGGGAGCCAAATGGTC ]
[+] EMBL CA762396 [ TTTTGTGTGGCTTGGTAGCCGTGAAATGGAATGAAATTTGCCCTTAAATGTCATTGCGTCTACCAAAACCAAAAAAAGAAAAAGAAAAATTCCTCGTCTAAGCATTTCAAAACAAAATTTTCCAGTTGAACACTCAGTTTCCTTAGCTTTCAAAGAAAGAAGATCGAAGAGATCCTAAAGGATCATCTTCTCGAGAGACCCCGGGTAGAGCAGAGCATCATCATCCTGGACAGTCTCGATGAGCCGAAAGCCATGAGCCCGTTACGTCTCTTAAAAACCTGCTTGCTCACTCCCAAACCACCATTGCTAGGCTTTACAGCATCGGCTGCTGCTGCTGCTTTCCTCACGAACAACGATATGAAGAAGCCCTCCAGGCCGTCCTCCGGGTCCGTCCGAAGCAGATGCTCAGATCCTTCAAAGACGGGGAGACCACGGCGTCGCCATTGAGGGAATGGAGTAGCGAGCTCGAATCCNAGCGATGACGCCNATGGCAGGACGGAGCTCACGACGTCCTCGTTCTCAGCTTGGTGGATTGAGCAGGTGCTGTAGACCACTCTCTCCACAGAGGGGAATGACAGAGCATGTG AGAGCGCTTTCCTCTGGAAGGCGGAGAG TTTCCTTATCCTT GAACTCGTACTTGCATCATCCTGATTACCTCTTGAGTGCGAA GGGAG CANATGGTCAAGTCTCTCTGT ]
[+] EMBL CB650773 [ ggcccataAGAGCATCATCATCCTGGACAGTCTCGATGAGCCCCCA TCATGAGCCCGTTACGTCTCTTAAAAACCTGCTTGCTCACTCCCAAACCACCATTGCTAGGCTTTACAGCATCGGCTGCTGCTGCTGCTTTCCTCACGAACAACGATATGAAGAAGCCCTCCAGGCCGTCCTCCGGGTCCGTCCGAAGCAGATGCTCAGATCCTTCAAAGACGGGGAGACCACGGCGTCGCCATTGAGGGAATGGAGTAGCGAGCTCGAATCCGAGCGATGACGCCAATGGCAGGACGGAGCTCACGACGTCCTCGTTCTCAGCTTGGTGGATTGAGCAGGTGCTGTAGACCACTCTCTCCACAGAGGGGAATGACAGAGCATGTG AGAGCGCTTTCCTCTGGAAGGCGGAGAG TTTCCTTATCCTT GAACTCGTACTTGCATCATCCTGATTACCTCTTGAGTGCGAA GGGAG CAAATGGTCAAGTCTCTCTGTAGAGATTCCGGAACCAGAGCAAGAGGGATCTAATAGAATA GCTCGGACCTCGGCATATGATGGA TCATTGCTATCGATATCCAAAAAGTCACCATTGATTGTTTCAATATTGTTTGCTCCGGATCTTCGGATAGTATTTTGCAAAGTCTTGGTCCTCTCTTTATTAAGTTCACAAGCTGTAATAC TCCCCTCTCCATTCATGAGTGCAGCAAGATGGACTGTTTTATTCCCTGGAGCCGCACATGCATCAATAACCTTCCAGCCTGGCTCAGGGCATAATGCAACTGCCACCATACAACTTGCTTTCCCTTGTAAAAATAC ]
[-] EMBL CB650772 [ TGACAGAGCATGTG AGAGCGCTTTCCTCTGGAAGGCGGAGAG TTTCCTTATCCTT GAACTCGTACTTGCATCATCCTGATTACCTCTTGAGTGCGAA GGGAG CAAATGGTCAAGTCTCTCTGTAGAGATTCCGGAACCAGAGCAAGAGGGATCTAATAGAATA GCTCGGACCTCGGCATATGATGGA TCATTGCTATCGATATCCAAAAAGTCACCATTGATTGTTTCAATATTGTTTGCTCCGGATCTTCGGATAGTATTTTGCAAAGTCTTGGTCCTCTCTTTATTAAGTTCACAAGCTGTAATAC TCCCCTCTCCATTCATGAGTGCAGCAAGATGGACTGTTTTATTCCCTGGAGCCGCACATGCATCAATAACCTTCCAGCCTGGCTCAGGGCATAATGCAACTGCCACCATACAACTTGCTTTCCCTTGTAAAAATACTTTTCCTTCTGAGACCAAATGGTGGTTATGCAAATCAGTTCCAGGTGGGAGCACCAACAAGTCCGGAACCAATTCGTCTTTATCAACCTTGTGTATTTTGTTCAGTTCTTCGATGACAGAATCTGTACTGGTCCTGAGTGTGTTAACACGAAGAAACCTGGGTTTTGGTTTGACTGTCCTTTTCTTGCTTACTAAGTCTTCAACACTACGAACCTTCCTTCTAATACACATTTTCTCAAGAGCAGCCATAATAGTATCCTTATGTAACATAATTAACTGTTCAACGGATCCAGAAGCTGCTGTCTCCTGAGCAAAGAGA]
[-] EMBL OS0365A [ CTCT GAA GCGGAGAG TTCCTTA CCTT G ACTCGT CTT CATCATCCTGATT CCTCTTGAGT CGAA GGGAG CAAATGGTCAAG CTCTCTGTAGAGA TCCGGAACCAGAGCAAGAGGGATCTAATAGAATAGGCTCGGACCTCGGCATATGATGGATTCATTGCTATCGATATCCAAAAAGTCACCATTGATTGTTTCAATATTGTTTGCTCCGGATCTTCGGATAGTATTTTGCAAAGTCTTGG CCTCTCTTTATTAAGTTCACAAGCTGTAATACTTCCCCTCTCCATTCATGAGTGCAGCAAGATGGACTGTTTTATTCCCTGGAGCCGCACA ]
consensusID : consensus_8823#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence
[NAANACTTAAANAATNGTAAGNNNNNNAANTTCNNNNNTTANAAAAAANNGNNANCANNNNAAAGGNANTNTNTAAAAANNTCAGGGGAAAAAAAGNTTNAGANCCNTGNNAANCNNAATAAANNNAANCNNAAANNCGGTTCGTCNNTAAAANTTNTTGNAACCCAAAAACCACNAATTNGAAGNTTTAAAGANCGGGTTNTTNNTNTTCTTTTCNNACANAAAACGAATTTTNAAAAAACCCNCNAAGGCGGNCTCNGGGNNCCGTCCAAAAGAAAATTCNTAAGANCCTTCAAAAGNCCGGGGANACCCACGCGGNCGCNATTTGAGGGAATGGAGTANCGAAGCTCGAATCCGAACGATTGACGCCAATGGCAAGGACGGAGCTCACGACGTCCNCGTTCTCAGCTTGGTGGATTGAGCAGGTGCTGTAGACCACTCTCTCCACAGAGGGGAATGACAGAGCATGTGAGAGCGCTTTCCTCTGGAAGGCGGAGAGTTTCCTTATCCTTGAACTCGTACTTGCATCATCCTGATTACCTCTTGAGTGCGAAGGGAGCAAATGGTCAAGTCTCTCTGTAGAGATTCCGGAACCAGAGCAAGAGGGATCTAATAGAATAGCTCGGACCTCGGCATATGATGGATCATTGCTATCGATATCCAAAAAGTCACCATTGATTGTTTCAATATTGTTTGCTCCGGATCTTC]
[-] EMBL D43352 [NAANACTTAAANAATNGTAAGNNNNNNAANTTCNNNNNTTANAAAAAANNGNNANCANNNNAAAGGNANTNTNTAAAAANNTCAGGGGAAAAAAAGNTTNAGANCCNTGNNAANCNNAATAAANNNAANCNNAAANNCGGTTCGTCNNTAAAANTTNTTGNAACCCAAAAACCACNAATTNGAAGNTTTAAAGANCGGGTTNTTNNTNTTCTTTTCNNACANAAAACGAATTTTNAAAAAACCCNCNAAGGCGGNCTCNGGGNNCCGTCCAAAAGAAAATTCNTAAGANCCTTCAAAAGNCCGGGGANACCCACGCGGNCGCNATTTGAGGGAATGGAGTANCGAAGCTCGAATCCGAACGATTGACGCCAATGGCAAGGACGGAGCTCACGACGTCCNCGTTCTCAGCTTGGTGGATTGAGCAGGTGCTGTAGACCACTCTCTCCACAGAGGGGAATGACAGAGCATGTGAGAGCGCTTTCCTCTGGAAGGCGGAGAGTTTCCTTATCCTTGAACTCGTACTTGCATCATCCTGATTACCTCTTGAGTGCGAAGGGAGCAAATGGTCAAGTCTCTCTGTAGAGATTCCGGAACCAGAGCAAGAGGGATCTAATAGAATAGCTCGGACCTCGGCATATGATGGATCATTGCTATCGATATCCAAAAAGTCACCATTGATTGTTTCAATATTGTTTGCTCCGGATCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8823#0 TTTTTTTTTTTTTTTGTGTGGCTTGGTAGCCGTGAAATGGAATGAAATTTGCCCTTAAAT 60
consensus_8823#1 ------------------------------------------------------------
consensus_8823#0 GTCATTGCGTCTACAAAAACCAAAAAAAGAAAAAGAAAAATTCCTCGTCTAAGCATTTCA 120
consensus_8823#1 ------------------------------------------------------------
consensus_8823#0 AAACAAAATTTTCCAGTTGAACACTCAGTTTCCTTAGCTTTCAAAGAAAGAAGATCGAAG 180
consensus_8823#1 --NAANACTTAAANAATNGTAAGNNNNNNAANTTCNNNNNTTANAAAAA----ANNGNNA 54
* * ** * * * * * * * * *** * *
consensus_8823#0 AGATCCTAAAGGATCATCTTCTCGAGAGACCCCGGGTAGAGCAGAGCATCATCATCCTGG 240
consensus_8823#1 NCANNNNAAAGGNAN----TNTNTAAAAANNTCAGGGGAAAAAAAGNTTNAG-ANCCNTG 109
* ***** * * * * * * ** * * ** * * * ** *
consensus_8823#0 ACAGTCTCGATGAGCCGAAAGCCATGAGCCCGTTACGTCTCTTAAAAACCTGCTTGCTCA 300
consensus_8823#1 NNAANCNNAATAAANNNAAN--CNNAAANNCGGTTCGTCNNT--AAAANTTNTTGNA--A 163
* * ** * ** * * ** * **** * **** * * *
consensus_8823#0 CTCCCAAACCACCATTGCTAGGCTTTACAGCATCGGCTGCTGCTGCTGCTTTCCTCACGA 360
consensus_8823#1 CCCAAAAACCACNAATTNGAAGNTTTAAAGANCGGGTTNTTNNTNTT-CTTTTCNNACAN 222
* * ******* * * * * **** ** ** * * * * **** * **
consensus_8823#0 ACAACGA--TATGAAGAAGCCCTCCAGGCCGTCCTCCGGGTCC-GTCCGAAGCAGA--TG 415
consensus_8823#1 AAAACGAATTTTNAAAAAACCCNCNAAGGCGGNCTCNGGGNNCCGTCCAAAAGAAAATTC 282
* ***** * * ** ** *** * * * ** *** *** * **** ** * * *
consensus_8823#0 CTCAGATCCTTCAAAGAC--GGGGAGACC-ACGGCGTCGCCATT-GAGGGAATGGAGTAG 471
consensus_8823#1 NTAAGANCCTTCAAAAGNCCGGGGANACCCACGCGGNCGCNATTTGAGGGAATGGAGTAN 342
* *** ******** ***** *** *** * *** *** **************
consensus_8823#0 CGA-GCTCGAATCCGAGCGAT-GACGCCAATGGCA-GGACGGAGCTCACGACGTCCTCGT 528
consensus_8823#1 CGAAGCTCGAATCCGAACGATTGACGCCAATGGCAAGGACGGAGCTCACGACGTCCNCGT 402
*** ************ **** ************* ******************** ***
consensus_8823#0 TCTCAGCTTGGTGGATTGAGCAGGTGCTGTAGACCACTCTCTCCACAGAGGGGAATGACA 588
consensus_8823#1 TCTCAGCTTGGTGGATTGAGCAGGTGCTGTAGACCACTCTCTCCACAGAGGGGAATGACA 462
************************************************************
consensus_8823#0 GAGCATGTGAGAGCGCTTTCCTCTGGAAGGCGGAGAGTTTCCTTATCCTTGAACTCGTAC 648
consensus_8823#1 GAGCATGTGAGAGCGCTTTCCTCTGGAAGGCGGAGAGTTTCCTTATCCTTGAACTCGTAC 522
************************************************************
consensus_8823#0 TTGCATCATCCTGATTACCTCTTGAGTGCGAAGGGAGCAAATGGTCAAGTCTCTCTGTAG 708
consensus_8823#1 TTGCATCATCCTGATTACCTCTTGAGTGCGAAGGGAGCAAATGGTCAAGTCTCTCTGTAG 582
************************************************************
consensus_8823#0 AGATTCCGGAACCAGAGCAAGAGGGATCTAATAGAATAGCTCGGACCTCGGCATATGATG 768
consensus_8823#1 AGATTCCGGAACCAGAGCAAGAGGGATCTAATAGAATAGCTCGGACCTCGGCATATGATG 642
************************************************************
consensus_8823#0 GATCATTGCTATCGATATCCAAAAAGTCACCATTGATTGTTTCAATATTGTTTGCTCCGG 828
consensus_8823#1 GATCATTGCTATCGATATCCAAAAAGTCACCATTGATTGTTTCAATATTGTTTGCTCCGG 702
************************************************************
consensus_8823#0 ATCTTCGGATAGTATTTTGCAAAGTCTTGGTCCTCTCTTTATTAAGTTCACAAGCTGTAA 888
consensus_8823#1 ATCTTC------------------------------------------------------ 708
******
consensus_8823#0 TACTCCCCTCTCCATTCATGAGTGCAGCAAGATGGACTGTTTTATTCCCTGGAGCCGCAC 948
consensus_8823#1 ------------------------------------------------------------
consensus_8823#0 ATGCATCAATAACCTTCCAGCCTGGCTCAGGGCATAATGCAACTGCCACCATACAACTTG 1008
consensus_8823#1 ------------------------------------------------------------
consensus_8823#0 CTTTCCCTTGTAAAAATACTTTTCCTTCTGAGACCAAATGGTGGTTATGCAAATCAGTTC 1068
consensus_8823#1 ------------------------------------------------------------
consensus_8823#0 CAGGTGGGAGCACCAACAAGTCCGGAACCAATTCGTCTTTATCAACCTTGTGTATTTTGT 1128
consensus_8823#1 ------------------------------------------------------------
consensus_8823#0 TCAGTTCTTCGATGACAGAATCTGTACTGGTCCTGAGTGTGTTAACACGAAGAAACCTGG 1188
consensus_8823#1 ------------------------------------------------------------
consensus_8823#0 GTTTTGGTTTGACTGTCCTTTTCTTGCTTACTAAGTCTTCAACACTACGAACCTTCCTTC 1248
consensus_8823#1 ------------------------------------------------------------
consensus_8823#0 TAATACACATTTTCTCAAGAGCAGCCATAATAGTATCCTTATGTAACATAATTAACTGTT 1308
consensus_8823#1 ------------------------------------------------------------
consensus_8823#0 CAACGGATCCAGAAGCTGCTGTCTCCTGAGCAAAGAGA 1346
consensus_8823#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||