Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8829 cluster # 8829       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8829#0 length = 1805 sequences # 3  
consensus_8829#1 length = 1129 sequences # 1  
consensus_8829#2 length = 640 sequences # 2  

consensusID : consensus_8829#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1805
fasta sequence
                              [TTCGCCTCCGTCGGCCGCGTCGCCGGCGTCGAGTTCGTGCGCACCAACGGCCGCAGCTTCGCCTACGTCGACTTCCACTGCCCCTCCGACAAGGCTCTCGCCAAGCTCTTCTCCACCTACAATGGGTGTAAGTGGAAAGGGGGAAAACTTAGGCTGGAGAAGGCTAAGGAGCACTACCTTACTCGCCTGAAGCGTGAATGGGAGCAGGAAGCGGCAGCGGCGCAGGAAATGCCAGCTAGTGCTGATGTGGAGAGCAAGAAGGAGAAGCTCGAGCTGAATAAGGCTGTTTTGGATAGTACGAAGATTAACATCTACTTCCCAAAACTGAGGAAGGTGAAAGCCTTGCCTTTTAAAGGCACTGGAAAGCACAAATACAGTTTCCGGCATATCGAAGTCCCTTCTTACCCAATTCATTTTTGTGACTGTGAGGAGCACTGTGGACCTCCAGAGGCAGCTAATGATGAATATGCTTCTGTTCTTGATGCTGCTGCATATGAAAAGGAGCGCAGTATTATGAATTCTGTGATGAGCAAGCTCTTTGAGAAGGAGAATGACCATTTAGATTCAATGGAAATTCAGAATCATGGTGTCGATTTTGATGCCGCGGAACCCTCTAACGCCAGGAATGAGTTGCAAATGGATAAAAGAGAAGAAACTTCTGAGGAAGATTTGGATGACCAAATGGAAGAAACAGAAGATCCTTCTGAGGAAGAATTGGATGATCTCGTGCTTAACATCGTGACTTGCAAGCCAAAAAGCTCTGTAGCACAATTGAATAGCGAAAAGCAAGCAGCGGATAAGGACTCGCGCTTCAGAAAACGTCAACAATTTGAAGAATCTTCTCTGCAGAAGAGGCATAAATCCTCTGATTTCTCTGAAACTAGAAATAGGAAACAGTCTTTCCCTGCTATATCAGGAGCCATCCAAAATGAACAAAAATCTTCAGATTTGTCAGGAAAAGGTACACATGAGTTCTCATCAGAACTCGATGGAGATAAAAGTTCTGCTAGTGTCCAAGATGTTGAAGCACTAGCAGATTCTTCTACCAGAAATGGGAGTGAACAAAATTCGCTTGCTAGTGAACCTAAAAGAGTTTCCTTGTGGACTCAGAAATCTGCCTGGAGGGATCTTGTTGGTGGCATGGGGAGTGCATCTTTCAGTCTATCACAAATATTGCCAAACACCAATCCAGCACCACCAAAAGTTTCAAATGCTACCGAGGCCTCTGCTTCACATGCTGAGTCCAGGACGAAAGTGAAACCAAGCGGGAAATCTTTGAAACCCTCGGAAGCTGCAACTCAGCTCTTGCCTGAGCAGAAGATGCCTACAAGTTCCATGGCAATGCTGTCTAGTGAGCGTAAGGAGAATAATAAGCTGGAAAAGGAGAGGGTGGTTCCAAAGATCACTATTGGTGAAGTGTGTCCGTTCATGAGAAATTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAAGGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACAACGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTATTTTGTTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCACAATGCTATGTACGAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCAATTTAAAGTCAAACATGTT]

[+] EMBL AK064810             [TTCGCCTCCGTCGGCCGCGTCGCCGGCGTCGAGTTCGTGCGCACCAACGGCCGCAGCTTCGCCTACGTCGACTTCCACTGCCCCTCCGACAAGGCTCTCGCCAAGCTCTTCTCCACCTACAATGGGTGTAAGTGGAAAGGGGGAAAACTTAGGCTGGAGAAGGCTAAGGAGCACTACCTTACTCGCCTGAAGCGTGAATGGGAGCAGGAAGCGGCAGCGGCGCAGGAAATGCCAGCTAGTGCTGATGTGGAGAGCAAGAAGGAGAAGCTCGAGCTGAATAAGGCTGTTTTGGATAGTACGAAGATTAACATCTACTTCCCAAAACTGAGGAAGGTGAAAGCCTTGCCTTTTAAAGGCACTGGAAAGCACAAATACAGTTTCCGGCATATCGAAGTCCCTTCTTACCCAATTCATTTTTGTGACTGTGAGGAGCACTGTGGACCTCCAGAGGCAGCTAATGATGAATATGCTTCTGTTCTTGATGCTGCTGCATATGAAAAGGAGCGCAGTATTATGAATTCTGTGATGAGCAAGCTCTTTGAGAAGGAGAATGACCATTTAGATTCAATGGAAATTCAGAATCATGGTGTCGATTTTGATGCCGCGGAACCCTCTAACGCCAGGAATGAGTTGCAAATGGATAAAAGAGAAGAAACTTCTGAGGAAGATTTGGATGACCAAATGGAAGAAACAGAAGATCCTTCTGAGGAAGAATTGGATGATCTCGTGCTTAACATCGTGACTTGCAAGCCAAAAAGCTCTGTAGCACAATTGAATAGCGAAAAGCAAGCAGCGGATAAGGACTCGCGCTTCAGAAAACGTCAACAATTTGAAGAATCTTCTCTGCAGAAGAGGCATAAATCCTCTGATTTCTCTGAAACTAGAAATAGGAAACAGTCTTTCCCTGCTATATCAGGAGCCATCCAAAATGAACAAAAATCTTCAGATTTGTCAGGAAAAGGTACACATGAGTTCTCATCAGAACTCGATGGAGATAAAAGTTCTGCTAGTGTCCAAGATGTTGAAGCACTAGCAGATTCTTCTACCAGAAATGGGAGTGAACAAAATTCGCTTGCTAGTGAACCTAAAAGAGTTTCCTTGTGGACTCAGAAATCTGCCTGGAGGGATCTTGTTGGTGGCATGGGGAGTGCATCTTTCAGTCTATCACAAATATTGCCAAACACCAATCCAGCACCACCAAAAGTTTCAAATGCTACCGAGGCCTCTGCTTCACATGCTGAGTCCAGGACGAAAGTGAAACCAAGCGGGAAATCTTTGAAACCCTCGGAAGCTGCAACTCAGCTCTTGCCTGAGCAGAAGATGCCTACAAGTTCCATGGCAATGCTGTCTAGTGAGCGTAAGGAGAATAATAAGCTGGAAAAGGAGAGGGTGGTTCCAAAGATCACTATTGGTGAAGTGTGTCCGTTCATGAGAAATTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAAGGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACAACGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTATTTTGTTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCACAATGCTATGTACGAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCAATTTAAAGTCAAACATGTT]
[+] EMBL AK068239             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAATGGAAATTCAGAATCATGGTGTCGATTTTGATGCCGCGGAACCCTCTAACGCCAGGAATGAGTTGCAAATGGATAAAAGAGAAGAAACTTCTGAGGAAGATTTGGATGACCAAATGGAAGAAACAGAAGATCCTTCTGAGGAAGAATTGGATGATCTCGTGCTTAACATCGTGACTTGCAAGCCAAAAAGCTCTGTAGCACAATTGAATAGCGAAAAGCAAGCAGCGGATAAGGACTCGCGCTTCAGAAAACGTCAACAATTTGAAGAATCTTCTCTGCAGAAGAGGCATAAATCCTCTGATTTCTCTGAAACTAGAAATAGGAAACAGTCTTTCCCTGCTATATCAGGAGCCATCCAAAATGAACAAAAATCTTCAGATTTGTCAGGAAAAGGTACACATGAGTTCTCATCAGAACTCGATGGAGATAAAAGTTCTGCTAGTGTCCAAGATGTTGAAGCACTAGCAGATTCTTCTACCAGAAATGGGAGTGAACAAAATTCGCTTGCTAGTGAACCTAAAAGAGTTTCCTTGTGGACTCAGAAATCTGCCTGGAGGGATCTTGTTGGTGGCATGGGGAGTGCATCTTTCAGTCTATCACAAATATTGCCAAACACCAATCCAGCACCACCAAAAGTTTCAAATGCTACCGAGGCCTCTGCTTCACATGCTGAGTCCAGGACGAAAGTGAAACCAAGCGGGAAATCTTTGAAACCCTCGGAAGCTGCAACTCAGCTCTTGCCTGAGCAGAAGATGCCTACAAGTTCCATGGCAATGCTGTCTAGTGAGCGTAAGGAGAATAATAAGCTGGAAAAGGAGAGGGTGGTTCCAAAGATCACTATTGGTGAAGTGTGTCCGTTCATGAGAAATTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAAGGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACAACGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTATTTTGTTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCACAATGCTATGTACGAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCAATTTAAAGTCA        ]
[-] EMBL CB684076             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTCAGTCTATCACAAATATTGCCAAACACCAATCCAGCACCACCAAAAGTTTCAAATGCTACCGAGGCCTCTGCTTCACATGCTGAGTCCAGGACGAAAGTGAAACCAAGCGGGAAATCTTTGAAACCCTCGGAAGCTGCAACTCAGCTCTTGCCTGAGCAGAAGATGCCTACAAGTTCCATGGCAATGCTGTCTAGTGAGCGTAAGGAGAATAATAAGCTGGAAAAGGAGAGGGTGGTTCCAAAGATCACTATTGGTGAAGTGTGTCCGTTCATGAGAAATTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAAGGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACAACGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTATTTTGTTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCACAATGCTATGTACGAGTTTTGTAAGGATTGTTATTATT                                ]


>consensus_8829#0 TTCGCCTCCGTCGGCCGCGTCGCCGGCGTCGAGTTCGTGCGCACCAACGGCCGCAGCTTC GCCTACGTCGACTTCCACTGCCCCTCCGACAAGGCTCTCGCCAAGCTCTTCTCCACCTAC AATGGGTGTAAGTGGAAAGGGGGAAAACTTAGGCTGGAGAAGGCTAAGGAGCACTACCTT ACTCGCCTGAAGCGTGAATGGGAGCAGGAAGCGGCAGCGGCGCAGGAAATGCCAGCTAGT GCTGATGTGGAGAGCAAGAAGGAGAAGCTCGAGCTGAATAAGGCTGTTTTGGATAGTACG AAGATTAACATCTACTTCCCAAAACTGAGGAAGGTGAAAGCCTTGCCTTTTAAAGGCACT GGAAAGCACAAATACAGTTTCCGGCATATCGAAGTCCCTTCTTACCCAATTCATTTTTGT GACTGTGAGGAGCACTGTGGACCTCCAGAGGCAGCTAATGATGAATATGCTTCTGTTCTT GATGCTGCTGCATATGAAAAGGAGCGCAGTATTATGAATTCTGTGATGAGCAAGCTCTTT GAGAAGGAGAATGACCATTTAGATTCAATGGAAATTCAGAATCATGGTGTCGATTTTGAT GCCGCGGAACCCTCTAACGCCAGGAATGAGTTGCAAATGGATAAAAGAGAAGAAACTTCT GAGGAAGATTTGGATGACCAAATGGAAGAAACAGAAGATCCTTCTGAGGAAGAATTGGAT GATCTCGTGCTTAACATCGTGACTTGCAAGCCAAAAAGCTCTGTAGCACAATTGAATAGC GAAAAGCAAGCAGCGGATAAGGACTCGCGCTTCAGAAAACGTCAACAATTTGAAGAATCT TCTCTGCAGAAGAGGCATAAATCCTCTGATTTCTCTGAAACTAGAAATAGGAAACAGTCT TTCCCTGCTATATCAGGAGCCATCCAAAATGAACAAAAATCTTCAGATTTGTCAGGAAAA GGTACACATGAGTTCTCATCAGAACTCGATGGAGATAAAAGTTCTGCTAGTGTCCAAGAT GTTGAAGCACTAGCAGATTCTTCTACCAGAAATGGGAGTGAACAAAATTCGCTTGCTAGT GAACCTAAAAGAGTTTCCTTGTGGACTCAGAAATCTGCCTGGAGGGATCTTGTTGGTGGC ATGGGGAGTGCATCTTTCAGTCTATCACAAATATTGCCAAACACCAATCCAGCACCACCA AAAGTTTCAAATGCTACCGAGGCCTCTGCTTCACATGCTGAGTCCAGGACGAAAGTGAAA CCAAGCGGGAAATCTTTGAAACCCTCGGAAGCTGCAACTCAGCTCTTGCCTGAGCAGAAG ATGCCTACAAGTTCCATGGCAATGCTGTCTAGTGAGCGTAAGGAGAATAATAAGCTGGAA AAGGAGAGGGTGGTTCCAAAGATCACTATTGGTGAAGTGTGTCCGTTCATGAGAAATTCA GAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAAGGGC AATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACAACGT AGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTAGCATGTCATTCCAGCT TCATCTTGTTGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTATTTTG TTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCACAATG CTATGTACGAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCAATTTAAAGTCAAAC ATGTT



consensusID : consensus_8829#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1129
fasta sequence
                              [ATACAGTTTCCGGCATATCGAAGTCCCTTCTTACCCAATTCATTTTTGTGACTGTGAGGAGCACTGTGGACCTCCAGAGGCAGCTAATGATGAATATGCTTCTGTTCTTGATGCTGCTGCATATGAAAAGGAGCGCAGTATTATGAATTCTGTGATGAGCAAGCTCTTTGAGAAGGAGAATGACCATTTAGATTCAATGGAAATTCAGAATCATGGTGTCGATTTTGATGCCGCGGAACCCTCTAACGCCAGGAATGAGTTGCAAATGGATAAAAGAGAAGAAACTTCTGAGGAAGATTTGGATGACCAAATGGAAGAAACAGAAGATCCTTCTGAGGAAGAATTGGATGATCTCGTGCTTAACATCGTGACTTGCAAGCCAAAAAGCTCTGTAGCACAATTGAATAGCGAAAAGCAAGCAGCGGATAAGGACTCGCGCTTCAGAAAACGTCAACAATTTGAAGAATCTTCTCTGCAGAAGAGGCATAAATCCTCTGATTTCTCTGAAACTAGAAATAGGAAACAGTCTTTCCCTGCTATATCAGGAGCCATCCAAAATGAACAAAAATCTTCAGATTTGTCAGGAAAAGGTACACATGAGTTCTCATCAGAACTCGATGGAGATAAAAGTTCTGCTAGTGTCCAAGATGTTGAAGCACTAGCAGATTCTTCTACCAGAAATGGGAGTGAACAAAATTCGCTTGCTAGTGAACCTAAAAGAGTTTCCTTGTGGACTCAGAAAGGTGAAGTGTGTCCGTTCATGAGAAATTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAAGGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACAACGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTATTTTGTTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCACAATGCTATGTACGAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCAATTTAAAGTCA]

[+] EMBL AK062066             [ATACAGTTTCCGGCATATCGAAGTCCCTTCTTACCCAATTCATTTTTGTGACTGTGAGGAGCACTGTGGACCTCCAGAGGCAGCTAATGATGAATATGCTTCTGTTCTTGATGCTGCTGCATATGAAAAGGAGCGCAGTATTATGAATTCTGTGATGAGCAAGCTCTTTGAGAAGGAGAATGACCATTTAGATTCAATGGAAATTCAGAATCATGGTGTCGATTTTGATGCCGCGGAACCCTCTAACGCCAGGAATGAGTTGCAAATGGATAAAAGAGAAGAAACTTCTGAGGAAGATTTGGATGACCAAATGGAAGAAACAGAAGATCCTTCTGAGGAAGAATTGGATGATCTCGTGCTTAACATCGTGACTTGCAAGCCAAAAAGCTCTGTAGCACAATTGAATAGCGAAAAGCAAGCAGCGGATAAGGACTCGCGCTTCAGAAAACGTCAACAATTTGAAGAATCTTCTCTGCAGAAGAGGCATAAATCCTCTGATTTCTCTGAAACTAGAAATAGGAAACAGTCTTTCCCTGCTATATCAGGAGCCATCCAAAATGAACAAAAATCTTCAGATTTGTCAGGAAAAGGTACACATGAGTTCTCATCAGAACTCGATGGAGATAAAAGTTCTGCTAGTGTCCAAGATGTTGAAGCACTAGCAGATTCTTCTACCAGAAATGGGAGTGAACAAAATTCGCTTGCTAGTGAACCTAAAAGAGTTTCCTTGTGGACTCAGAAAGGTGAAGTGTGTCCGTTCATGAGAAATTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAAGGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACAACGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTATTTTGTTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCACAATGCTATGTACGAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCAATTTAAAGTCA]


>consensus_8829#1 ATACAGTTTCCGGCATATCGAAGTCCCTTCTTACCCAATTCATTTTTGTGACTGTGAGGA GCACTGTGGACCTCCAGAGGCAGCTAATGATGAATATGCTTCTGTTCTTGATGCTGCTGC ATATGAAAAGGAGCGCAGTATTATGAATTCTGTGATGAGCAAGCTCTTTGAGAAGGAGAA TGACCATTTAGATTCAATGGAAATTCAGAATCATGGTGTCGATTTTGATGCCGCGGAACC CTCTAACGCCAGGAATGAGTTGCAAATGGATAAAAGAGAAGAAACTTCTGAGGAAGATTT GGATGACCAAATGGAAGAAACAGAAGATCCTTCTGAGGAAGAATTGGATGATCTCGTGCT TAACATCGTGACTTGCAAGCCAAAAAGCTCTGTAGCACAATTGAATAGCGAAAAGCAAGC AGCGGATAAGGACTCGCGCTTCAGAAAACGTCAACAATTTGAAGAATCTTCTCTGCAGAA GAGGCATAAATCCTCTGATTTCTCTGAAACTAGAAATAGGAAACAGTCTTTCCCTGCTAT ATCAGGAGCCATCCAAAATGAACAAAAATCTTCAGATTTGTCAGGAAAAGGTACACATGA GTTCTCATCAGAACTCGATGGAGATAAAAGTTCTGCTAGTGTCCAAGATGTTGAAGCACT AGCAGATTCTTCTACCAGAAATGGGAGTGAACAAAATTCGCTTGCTAGTGAACCTAAAAG AGTTTCCTTGTGGACTCAGAAAGGTGAAGTGTGTCCGTTCATGAGAAATTCAGAGTCAGA AAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAAGGGCAATGAGAG CACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACAACGTAGCATGTC ATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTAGCATGTCATTCCAGCTTCATCTTG TTGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTATTTTGTTGATTGG TCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCACAATGCTATGTAC GAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCAATTTAAAGTCA



consensusID : consensus_8829#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 640
fasta sequence
                              [TATCACCCATATTGCCAAACACCAATCCAGCACCACCAAAAGTTTCAAATGCTACCGAGGCCTCTGCTTCACATGCTGAGTCCAGGACGAAAG-TGAAACCAAGCGGG-AAATCTTTGAAACCCT-CGGAAGCTGCAACTCAGCTCTTGCCTGAGCAGAAGATGCCTACAAGTTCCATGGCAATGCTGTCTAGTGAGCGTAAGGAG-AATAATAAGCTGG-AAAAGGAGAGGGTGGTTCCAAAGATCACTATTGGTGAAGTGTGTCCGTTCATGAGAAATTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAAGGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACAACGTAGCATGTCATTCCAGCTTCATCTTGTT-GAACTACAAGCTCGGTAGCATGTCATTCCAGCTTCATCTTGT-TGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTATTTTGTTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCACAATGCTATGTACGAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCNTGCCAAATTCCTGCAA]

[+] EMBL CB684075             [TATCACCCATATTGCCAAACACCAATCCAGCACCACCAAAAGTTTCAAATGCTACCGAGGCCTCTGCTTCACATGCTGAGTCCAGGACGAAAG TGAAACCAAGCGGG AAATCTTTGAAACCCT CGGAAGCTGCAACTCAGCTCTTGCCTGAGCAGAAGATGCCTACAAGTTCCATGGCAATGCTGTCTAGTGAGCGTAAGGAG AATAATAAGCTGG AAAAGGAGAGGGTGGTTCCAAAGATCACTATTGGTGAAGTGTGTCCGTTCATGAGAAATTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAAGGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACAACGTAGCATGTCATTCCAGCTTCATCTTGTT GAACTACAAGCTCGGTAGCATGTCATTCCAGCTTCATCTTGT TGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTATTTTGTTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCACAATGCTATGTACGAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCNTGCCAAATTCCTGCAA]
[+] EMBL CA752994             [                                                                                      ACGAAAGTTGAAACCAAGCGGGAAAATCTTTGAAACCCTCCGGAAGCTGCAACTCAGCTCTGGCCTGAGCAGAAAATGCCTACAAGTCCCATGGCAATGCTGTCTAGTGAGCGTAAGGAGAAATAATAAGCTGGAAAAAGGAGAGGGTGGTTCCAAAGATCACTATTGGTGAAGTGTGTCCGTTCATGAGAAATTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTACTGACTGGTTTCATCAAGAAGGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAACCCATCAACAAGGAGATAACAACGTAGCATGTCATTCCAGCTTCATCTGGTTGGAACTACAAGCTCGGTAGCATGTCATTCCAGCTTCATCTTGTAGGAACTACAAGCTCGGTGGTGTCGTGTCTCATAGGAACATGTGTNATGNTGTNGATNGGTCTCATAGTCTGCCTGGTAAG ATGATCTGTNCTTGATTGTGAAGCAC ATGCTATGTACGATTTGTG TCAGA TGTCATGATGCTTCGTACa                    ]


>consensus_8829#2 TATCACCCATATTGCCAAACACCAATCCAGCACCACCAAAAGTTTCAAATGCTACCGAGG CCTCTGCTTCACATGCTGAGTCCAGGACGAAAGTGAAACCAAGCGGGAAATCTTTGAAAC CCTCGGAAGCTGCAACTCAGCTCTTGCCTGAGCAGAAGATGCCTACAAGTTCCATGGCAA TGCTGTCTAGTGAGCGTAAGGAGAATAATAAGCTGGAAAAGGAGAGGGTGGTTCCAAAGA TCACTATTGGTGAAGTGTGTCCGTTCATGAGAAATTCAGAGTCAGAAAAGCAATGGTCAA AGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAAGGGCAATGAGAGCACTGGATCGAATG TCGGGAAAGGGAAGCCATCAACAAGGAGATAACAACGTAGCATGTCATTCCAGCTTCATC TTGTTGAACTACAAGCTCGGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCT CGGTGGTTTCGTGTCTCATAGGAACATGTGTTATTTTGTTGATTGGTCTCATAGTCTGCC TGTTAAGAATGATCTGTCTTTGTTTGTGAAGCACAATGCTATGTACGAGTTTTGTTCAAA TTGTTATTATTCTTTGTACGAGCNTGCCAAATTCCTGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8829#0      TTCGCCTCCGTCGGCCGCGTCGCCGGCGTCGAGTTCGTGCGCACCAACGGCCGCAGCTTC 60
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GCCTACGTCGACTTCCACTGCCCCTCCGACAAGGCTCTCGCCAAGCTCTTCTCCACCTAC 120
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      AATGGGTGTAAGTGGAAAGGGGGAAAACTTAGGCTGGAGAAGGCTAAGGAGCACTACCTT 180
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      ACTCGCCTGAAGCGTGAATGGGAGCAGGAAGCGGCAGCGGCGCAGGAAATGCCAGCTAGT 240
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GCTGATGTGGAGAGCAAGAAGGAGAAGCTCGAGCTGAATAAGGCTGTTTTGGATAGTACG 300
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      AAGATTAACATCTACTTCCCAAAACTGAGGAAGGTGAAAGCCTTGCCTTTTAAAGGCACT 360
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GGAAAGCACAAATACAGTTTCCGGCATATCGAAGTCCCTTCTTACCCAATTCATTTTTGT 420
consensus_8829#1      -----------ATACAGTTTCCGGCATATCGAAGTCCCTTCTTACCCAATTCATTTTTGT 49
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GACTGTGAGGAGCACTGTGGACCTCCAGAGGCAGCTAATGATGAATATGCTTCTGTTCTT 480
consensus_8829#1      GACTGTGAGGAGCACTGTGGACCTCCAGAGGCAGCTAATGATGAATATGCTTCTGTTCTT 109
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GATGCTGCTGCATATGAAAAGGAGCGCAGTATTATGAATTCTGTGATGAGCAAGCTCTTT 540
consensus_8829#1      GATGCTGCTGCATATGAAAAGGAGCGCAGTATTATGAATTCTGTGATGAGCAAGCTCTTT 169
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GAGAAGGAGAATGACCATTTAGATTCAATGGAAATTCAGAATCATGGTGTCGATTTTGAT 600
consensus_8829#1      GAGAAGGAGAATGACCATTTAGATTCAATGGAAATTCAGAATCATGGTGTCGATTTTGAT 229
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GCCGCGGAACCCTCTAACGCCAGGAATGAGTTGCAAATGGATAAAAGAGAAGAAACTTCT 660
consensus_8829#1      GCCGCGGAACCCTCTAACGCCAGGAATGAGTTGCAAATGGATAAAAGAGAAGAAACTTCT 289
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GAGGAAGATTTGGATGACCAAATGGAAGAAACAGAAGATCCTTCTGAGGAAGAATTGGAT 720
consensus_8829#1      GAGGAAGATTTGGATGACCAAATGGAAGAAACAGAAGATCCTTCTGAGGAAGAATTGGAT 349
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GATCTCGTGCTTAACATCGTGACTTGCAAGCCAAAAAGCTCTGTAGCACAATTGAATAGC 780
consensus_8829#1      GATCTCGTGCTTAACATCGTGACTTGCAAGCCAAAAAGCTCTGTAGCACAATTGAATAGC 409
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GAAAAGCAAGCAGCGGATAAGGACTCGCGCTTCAGAAAACGTCAACAATTTGAAGAATCT 840
consensus_8829#1      GAAAAGCAAGCAGCGGATAAGGACTCGCGCTTCAGAAAACGTCAACAATTTGAAGAATCT 469
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      TCTCTGCAGAAGAGGCATAAATCCTCTGATTTCTCTGAAACTAG-AAATAGGAAACAGTC 899
consensus_8829#1      TCTCTGCAGAAGAGGCATAAATCCTCTGATTTCTCTGAAACTAG-AAATAGGAAACAGTC 528
consensus_8829#2      -----------------------------TATCACCCATATTGCCAAACACCAATCCAGC 31
                                                   * ** *  * * *   *** *  ** *   *

consensus_8829#0      TTTCCCTGCTATATCAGGAGCCATCCAAAA-TGAACAAAAATCTTCAGATTTGTCAGGAA 958
consensus_8829#1      TTTCCCTGCTATATCAGGAGCCATCCAAAA-TGAACAAAAATCTTCAGATTTGTCAGGAA 587
consensus_8829#2      ACCACCAAAAGTTTCAAATGCTACCGAGGCCTCTGCTTCACATGCTGAGTCCAGGACGAA 91
                          **     * ***   ** * * *    *   *   *         *     * ***

consensus_8829#0      AAGGTA--CACATGAGTTCTCATCAGAACTCGATGGAGATAAAAGTTCTGCTAGTGTCCA 1016
consensus_8829#1      AAGGTA--CACATGAGTTCTCATCAGAACTCGATGGAGATAAAAGTTCTGCTAGTGTCCA 645
consensus_8829#2      AGTGAAACCAAGCGGGAAATCTTTGAAACCCTCGGAAGCTGCAA-CTCAGCTCTTGCCTG 150
                      *  * *  **   * *   ** *   *** *   * ** *  **  ** ***  ** *  

consensus_8829#0      AGATGTTGAAGCACTAGCAGATTCTTCTACCAGAAATGGGAGTGAACAAAATTCGCTTGC 1076
consensus_8829#1      AGATGTTGAAGCACTAGCAGATTCTTCTACCAGAAATGGGAGTGAACAAAATTCGCTTGC 705
consensus_8829#2      AGCAG--AAGATGCCTACAAGTTCCATGGCAATGCTGTCTAGTGAGCGTAA---GGAGAA 205
                      **  *   *    *   **  ***     * *        ***** *  **   *     

consensus_8829#0      TAGTGAACCTAAAAGAGTTTCCTTGTGGACTCAGAAATCTGCCTGGAGGGATCTTGTTGG 1136
consensus_8829#1      TAGTGAACCTAAAAGAGTTTCCTTGTGGACTCAGAAA----------------------- 742
consensus_8829#2      TAATAAGCTGGAAAAGGAGAGG--GTGGTTCCAAAGATCACTATT--------------- 248
                      ** * * *   ***  *       ****   ** * *                       

consensus_8829#0      TGGCATGGGGAGTGCATCTTTCAGTCTATCACAAATATTGCCAAACACCAATCCAGCACC 1196
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      ACCAAAAGTTTCAAATGCTACCGAGGCCTCTGCTTCACATGCTGAGTCCAGGACGAAAGT 1256
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GAAACCAAGCGGGAAATCTTTGAAACCCTCGGAAGCTGCAACTCAGCTCTTGCCTGAGCA 1316
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GAAGATGCCTACAAGTTCCATGGCAATGCTGTCTAGTGAGCGTAAGGAGAATAATAAGCT 1376
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      GGAAAAGGAGAGGGTGGTTCCAAAGATCACTATTGGTGAAGTGTGTCCGTTCATGAGAAA 1436
consensus_8829#1      ----------------------------------GGTGAAGTGTGTCCGTTCATGAGAAA 768
consensus_8829#2      ----------------------------------GGTGAAGTGTGTCCGTTCATGAGAAA 274
                                                        **************************

consensus_8829#0      TTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAA 1496
consensus_8829#1      TTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAA 828
consensus_8829#2      TTCAGAGTCAGAAAAGCAATGGTCAAAGGCAAAGAAGGTTCTGACTGGTTTCATCAAGAA 334
                      ************************************************************

consensus_8829#0      GGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACA 1556
consensus_8829#1      GGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACA 888
consensus_8829#2      GGGCAATGAGAGCACTGGATCGAATGTCGGGAAAGGGAAGCCATCAACAAGGAGATAACA 394
                      ************************************************************

consensus_8829#0      ACGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTAGCATGTCATTCC 1616
consensus_8829#1      ACGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTAGCATGTCATTCC 948
consensus_8829#2      ACGTAGCATGTCATTCCAGCTTCATCTTGTTGAACTACAAGCTCGGTAGCATGTCATTCC 454
                      ************************************************************

consensus_8829#0      AGCTTCATCTTGTTGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTAT 1676
consensus_8829#1      AGCTTCATCTTGTTGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTAT 1008
consensus_8829#2      AGCTTCATCTTGTTGAACTACAAGCTCGGTGGTTTCGTGTCTCATAGGAACATGTGTTAT 514
                      ************************************************************

consensus_8829#0      TTTGTTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCAC 1736
consensus_8829#1      TTTGTTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCAC 1068
consensus_8829#2      TTTGTTGATTGGTCTCATAGTCTGCCTGTTAAGAATGATCTGTCTTTGTTTGTGAAGCAC 574
                      ************************************************************

consensus_8829#0      AATGCTATGTACGAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCAATTTAAAGTC 1796
consensus_8829#1      AATGCTATGTACGAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCAATTTAAAGTC 1128
consensus_8829#2      AATGCTATGTACGAGTTTTGTTCAAATTGTTATTATTCTTTGTACGAGCNTGCCAAATTC 634
                      *************************************************     *** **

consensus_8829#0      AAACATGTT 1805
consensus_8829#1      A-------- 1129
consensus_8829#2      CTGCAA--- 640
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)