Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8842 cluster # 8842       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8842#0 length = 1463 sequences # 6  

consensusID : consensus_8842#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1463
fasta sequence
                              [AAGCGAAGCCNCAGCCCGCCACTCGCCTCCGCCCTCCGCGCGCGCGAACCC--CTCCCTCGGCGGCGGCGACGACCAAGGCGGCGGCGGCGGCAGCGGCGCAAGAGGACGCGGTAGCCCGATGGCGCCGCTCGTGCCGTCCTCGCAGCCATGGGTGGAGAAATACCGGCCGAGGCAGGTGAAGGATGTCGCGCACCAGGAGGAGGTGGTCCGGGTGCTCACCACCACCCTCCAGACCGCCGACCTTCCGCACATG-CTGTTCTACG-GCCCGCCTG-GCA-CCGGGAAGACCACCACCGCGCTTGCCATTGCTTACCAGCTCTACGGTCCAGAGCTCTACAAGTCAAGAGTTCTAGAACTTAATGCTAGTGATGATCGTGGAATTAATGTGGTGAGGACTAAGATCAAGGACTTTGCTGCTGTTGCTGTTGGTTCTGCACGAAAAGGCGGTTATCCCTGCCCACCATACAAGATTATTATACTAGATGAAGCAGATTCGATGACAGAAGATGCCCAGAATGCTTTAAGGCGTACTATGGAGACTTACTCCAAAGTGACAAGATTCTTTTTCATATGCAATTACATCAGCAGGATAATAGAACCACTTGCATCAAGATGTGCAAAGTTTAGATTCAAGCCTCTTTCAGAAGAAGTAATGAGCAATCGCATTTTGCATATATGCAATGAAGAAGGGCTCAGTCTTGATGCTCAGGCATTGGCTACACTAAGCACCATCTCTAATGGTGACCTCCGCCGTGCTATAACCTATCTTCAGAGCGCTGCTCGCTTATTTGGATCTTCTATTTCTTCTACTGACTTGATTAGTGTTTCAGGGGCTATCCCTGAAGACGTTGTCAAGTCATTGCTTGCATCTTGCAAATCTGGTGAATTTGATGTGGCAAACAAGGAAGTCAATAATATTATTGCAGATGGATACCCCGTTTCACAGTTGATCTCACAGTTTCTAGATGTGATAGTTAATGCCGATGATATTCCAGATGAGCAGAAGGCAAGAATATGTAAAAAGCTTGGGGAAGCAGATAAGTGCTTGGTCGATGGAGCGGATGAGTATTTACAGCTTTTGGATGTGGCTAGTGAGACTATCCGCGCTCTTTTTGACATGCCACAAACGCTGGTCTTCTAAGAGAACATGGATTGGAAAGATGACGCAGGTGGCCATTTCTGCGAGGGATATCTTCTGTCTCCTTTCCAAGTTTAGGTTCT-GGGGGAAGCTCATTTTCTCGACAGACTGTTGTGCCTTTTTTATGTTTGTGATGGGGATTAAATAGTGTGAACTCCACCCTTGTAACCAACTGAATTGTGCACCAGTGTGTC---CATGGAAAGAATGGTTTTCGGCCTGTCATCTTGTACATCATGCATCATTTT-CTTGTTCTGCTTATGGNTNGATGGAACCTTGCATTGGCCTTTTCCCCGCTCTTTAAAAAAAAAAAAAAAACCTCCGGGGGGGG]

[+] EMBL AB045677             [AAGCGAAGCCNCAGCCCACCACTCGCCTCCGCCCTCCGCGCGCGCGAACCCCTCTCCCTCGGCGGCGGCGACGACCAAGGCGGCGGCGGCG   GCGG   AAGAGGACGCGGTAGCCCGATGGCGCCGCTCGTGCCGTCCTCGCAGCCATGGGTGGAGAAATACCGGCCGAGGCAGGTGAAGGATGTCGCGCACCAGGAGGAGGTGGTCCGGGTGCTCACCACCACCCTCCAGACCGCCGACCTTCCGCACATG CTGTTCTACG GCCCGCCTG GCA CCGGGAAGACCACCACCGCGCTTGCCATTGCTTACCAGCTCTACGGTCCAGAGCTCTACAAGTCAAGAGTTCTAGAACTTAATGCTAGTGATGATCGTGGAATTAATGTGGTGAGGACTAAGATCAAGGACTTTGCTGCTGTTGCTGTTGGTTCTGCACGAAAAGGCGGTTATCCCTGCCCACCATACAAGATTATTATACTAGATGAAGCAGATTCGATGACAGAAGATGCCCAGAATGCTTTAAGGCGTACTATGGAGACTTACTCCAAAGTGACAAGATTCTTTTTCATATGCAATTACATCAGCAGGATAATAGAACCACTTGCATCAAGATGTGCAAAGTTTAGATTCAAGCCTCTTTCAGAAGAAGTAATGAGCAATCGCATTTTGCATATATGCAATGAAGAAGGGCTCAGTCTTGATGCTCAGGCATTGGCTACACTAAGCACCATCTCTAATGGTGACCTCCGCCGTGCTATAACCTATCTTCAGAGCGCTGCTCGCTTATTTGGATCTTCTATTTCTTCTACTGACTTGATTAGTGTTTCAGGGGCTATCCCTGAAGACGTTGTCAAGTCATTGCTTGCATCTTGCAAATCTGGTGAATTTGATGTGGCAAACAAGGAAGTCAATAATATTATTGCAGATGGATACCCCGTTTCACAGTTGATCTCACAGTTTCTAGATGTGATAGTTAATGCCGATGATATTCCAGATGAGCAGAAGGCAAGAATATGTAAAAAGCTTGGGGAAGCAGATAAGTGCTTGGTCGATGGAGCGGATGAGTATTTACAGCTTTTGGATGTGGCTAGTGAGACTATCCGCGCTCTTTTTGACATGCCACAAACGCTGGTCTTCTAAGAGAACATGGATTGGAAAGATGACGCAGGTGGCCATTTCTGCGAGGGATATCTTCTGTCTCCTTTCCAAGTTTAGGTTCT GGGGGAAGCTCATTTTCTCGACAGACTGTTGTGCCTTTTTTATGTTTGTGATGGGGATTAAATAGTGTGAACTCCACCCTTGTAACCAACTGAATTGTGCACCAGTGTGTC   CATGGAAAGAATGGTTTTCGGCCTGTCAaaaaaaa                                                                                                    ]
[+] EMBL CB652983             [      AGCCGCAGCCCGCCACTCGCCTCCGCCCTCCGCGCGCGCGAACCC  CTCCCTCGGCGGCGGCGACTACCAAGGCGGCGGCGGCGGCAGCGGCGCAAGAGGACGCGGTAGCCCGATGGCGCCGCTCGTGCCGTCCTCGCAGCCATGGGTGGAGAAATACCGGCCGAGGCAGGTGAAGGATGTCGCGCACCATGAGGAGGTGGTCCGGGTGCTCACCACCACCCTCCAGACCGCCGACCTTCCGCACATGTCTGTTCTACGAGCCCGCCTGTGCACCCGGGAAGACCACCACCGCGCTTGCCATTGCTTACCAGCTCTACGGTCCAGAGCTCTACAAGTCAAGAGTTCTAGAACTTAATGCTAGTGATGATCGTGGAATTAATGTGGTGAGGACTAAGATCAAGGACTTTGCTGCTGTTGCTGTTGGTTCTGCACGAAAAGGCGGTTATCCCTGCCCACCATACAAGATTATTATACTAGATGAAGCAGATTCGATGACAGAAGATGCCCAGAATGCTTTAAGGCGTACTATGGAGACTTACTCCAAAGTGACAAGATTCTTTTTCATATGCAATTACATCAGCAGGATAATAGAACCACTTGCATCAAGATGTGCAAAGTTTATATTCAAGCCTCTTTCAAAAGAAGTAATGAGCAATCGCATTTTGCATATATGCAATGAAGAAGGGCTCAGTCTTGATGCTCAGGCATTGGCTACACTAAGCACCATCTCTAATGGTGACCTCCGCCGTGCTATAACCTATCTTCATAGCGCTGCTCGCGTATTTGGATCTTCTATTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB677262             [           CAGCCCGCCACTCGCCTCCGCCCTCCGCGCGCGCGAACCC  CTCCCTCGGCGGCGGCGACGACCAAGGCGGCGGCGGCGGCAGCGGCGCAAGAGGACGCGGTAGCCCGATGGCGCCGCTCGTGCCGTCCTCACAGCCATGGGTGGAGAAATACCGGCCGAGGCAGGTGAAGGATGTCGCGCACCAGGAGGAGGTGGTCCGGGTGCTCACCACCACCCTCCAGACCGCCGACCTTCCGCACATG CTGTTCTACG GCCCGCCTG GCA CCGGGAAGACCACCACCGCGCTTGCCATTGCTTACCAGCTCTACGGTCCAGAGCTCTACAAGTCAAGAGTTCTAGAACTTAATGCTAGTGATGATCGTGGAATTAATGTGGTGAGGACTAAGATCAAGGACTTTGCTGCTGTTGCTGTTGGTTCTGCACGAAAAGGCGGTTATCCCTGCCCACCATACAAGATTATTATACTAGATGAAGCAGATTCGATGACAGAAGATGCCCAGAATGCTTTAAGGCGTACTATGGAGACTTACTCCAAAGTGACAAGATTCTTTTTCATATGCAATTACATCAGCAGGATAATAGAACCACTTGCATCAAGATGTGCAAAGTTTAGATTCAAGCCTCTTTCAGAAGAAGTAATGAGCAATCGCATTTTGCATATATGCAATGAAGAAGGGCTCAGTCTTGATGCTCAGGCATTGGCTACACTAAGCACCATCTCTAATGGTGACCTCCGCCGTGCTATAACCTATCTTCAGAGCGCTGCTCGCTTATTTGGATCTTCTATTTCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK103718             [                            CCGCCCTCCGCGCGCGCGAACCC  CTCCCTCGGCGGCGGCGACGACCAAGGCGGCGGCGGCGGCAGCGGCGCAAGAGGACGCGGTAGCCCGATGGCGCCGCTCGTGCCGTCCTCGCAGCCATGGGTGGAGAAATACCGGCCGAGGCAGGTGAAGGATGTCGCGCACCAGGAGGAGGTGGTCCGGGTGCTCACCACCACCCTCCAGACCGCCGACCTTCCGCACATG CTGTTCTACG GCCCGCCTG GCA CCGGGAAGACCACCACCGCGCTTGCCATTGCTTACCAGCTCTACGGTCCAGAGCTCTACAAGTCAAGAGTTCTAGAACTTAATGCTAGTGATGATCGTGGAATTAATGTGGTGAGGACTAAGATCAAGGACTTTGCTGCTGTTGCTGTTGGTTCTGCACGAAAAGGCGGTTATCCCTGCCCACCATACAAGATTATTATACTAGATGAAGCAGATTCGATGACAGAAGATGCCCAGAATGCTTTAAGGCGTACTATGGAGACTTACTCCAAAGTGACAAGATTCTTTTTCATATGCAATTACATCAGCAGGATAATAGAACCACTTGCATCAAGATGTGCAAAGTTTAGATTCAAGCCTCTTTCAGAAGAAGTAATGAGCAATCGCATTTTGCATATATGCAATGAAGAAGGGCTCAGTCTTGATGCTCAGGCATTGGCTACACTAAGCACCATCTCTAATGGTGACCTCCGCCGTGCTATAACCTATCTTCAGAGCGCTGCTCGCTTATTTGGATCTTCTATTTCTTCTACTGACTTGATTAGTGTTTCAGGGGCTATCCCTGAAGACGTTGTCAAGTCATTGCTTGCATCTTGCAAATCTGGTGAATTTGATGTGGCAAACAAGGAAGTCAATAATATTATTGCAGATGGATACCCCGTTTCACAGTTGATCTCACAGTTTCTAGATGTGATAGTTAATGCCGATGATATTCCAGATGAGCAGAAGGCAAGAATATGTAAAAAGCTTGGGGAAGCAGATAAGTGCTTGGTCGATGGAGCGGATGAGTATTTACAGCTTTTGGATGTGGCTAGTGAGACTATCCGTGCTCTTTTTGACATGCCACAAACGCTGGTCTTCTAAGAGAACATGGATTGGAAAGATGACGCAGGTGGCCATTTCTGCGAGGGATATCTTCTGTCTCCTTTCCAAGTTTAGGTTCT GGGGGAAGCTCATTTTCTCGACAGACTGTTGTGCCTTTTTTATGTTTGTGATGGGGATTAAATAGTGTGAACTCCACCCTTGTAACCAACTGAATTGTGCACCAGTGTGTC   CATGGAAAGAATGGTTTTCGGCCTGTCATCTTGTACATCATGCATCATTTT CTTGTTCTGCTTAT                                                                     ]
[+] EMBL CA757798             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGATGTGCAAAGTTTAGATTCAAGCCTCTTTCAGAAGAAGTAATGAGCAATCGCATTTTGCATATATGCAATGAAGAAGGGCTCAGTCTTGATGCTCAGGCATTGGCTACACTAAGCACCATCTCTAATGGTGACCTCCGCCGTGCTATAACCTATCTTCAGAGCGCTGCTCGCTTATTTGGATCTTCTATTTCTTCTACTGACTTGATTAGTGTTTCAGGGGCTATCCCTGAAGACGTTGTCAAGTCATTGCTTGCATCTTGCAAATCTGGTGAATTTGATGTGGCAAACAAGGAAGTCAATAATATTATTGCAGATGGATACCCCGTTTCACAGTTGATCTCACAGTTTCTAGATGTGATAGTTAATGCCGATGATATTCCAGATGAGCAGAAGGCAAGAATATGTAAAAAGCTTGGGGAAGCAGATAAGTGCTTGGTCGATGGAGCGGATGAGTATTTACAGCTTTTGGATGTGGCTAGTGAGACTATCCGCGCTCTTTTTGACATGCCACAAACGCTGGTCTTCTAAGAGAACATGGATTGGAAAGATGACGCAGGTGGCCATTTCTGCGAGGGATATCTTCTGTCTCCTTTCCAGNTTTANGTTCTGGGGGGAAGCTCATTTTCTCGACAGACTGTTGTGCCTTTTTTATGTTTGTGATGNGGATTAAATAATGTGAACTCCACCCTTGTAACCAACTGAATTGTGCACCAGTGTGTCCATCATGGAAAG ATGGTTTTCGGCCTGTCATCTTGTACATCATGCATCATTTTCCTTGTTCTGCTAATGGNTNGATGGAACCTTGCATTGGCCTTTTCCCCGCTCTTTAAAAAAAAAAAAAAAACCTCCGGGGGGGG]
[-] EMBL CB677263             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAAGAAGTAATGAGCAATCGCATTTTGCATATATGCAATGAAGAAGGGCTCAGTCTTGATGCTCAGGCATTGGTTACACTAAGCACCATCTCTAATGGTGACGTCCGCCGTGCTATAACATATCTTCAGAGCGCTGCTCGCTTATTTGGATCTTGTATTTGTTCTACTGACTTGACTAGTGTTTCAGGGGCTATCCCTGAAGACGTTGTCAAGTCATTGCTTGCATCTTGCAAATCTGGTGAATTTGATGTGGCAAACAAGGAAGTCAATAATATTATTGCAGATGGATACCCTGTTTCACAGTTGATCTCACAGTTTCTAGATGTGATAGTTAATGCCGATGATATTCCAGATGAGCAGAAGGCAAGAATATGTAAAAAGCTTGGGGAAGCAGATAAGTGCTTGGTCGATGGAGTGGATGAGTATTTACAGCTTTTGGATGTGGCTAGTGAGACTATCCGTGCTCTTTTTGACATGCCACAACCGCTGGTCTTCTTAGTGAACATGGATTGGAAAGATGACGCAGGTGGCCATTTATGTGAGGGATATCTTCTGTGTCCTTTCCAAGTTTAGGTTCT GGGGGAAGCTCATTTT                                                                                                                                                                                                                                         ]


>consensus_8842#0 AAGCGAAGCCNCAGCCCGCCACTCGCCTCCGCCCTCCGCGCGCGCGAACCCCTCCCTCGG CGGCGGCGACGACCAAGGCGGCGGCGGCGGCAGCGGCGCAAGAGGACGCGGTAGCCCGAT GGCGCCGCTCGTGCCGTCCTCGCAGCCATGGGTGGAGAAATACCGGCCGAGGCAGGTGAA GGATGTCGCGCACCAGGAGGAGGTGGTCCGGGTGCTCACCACCACCCTCCAGACCGCCGA CCTTCCGCACATGCTGTTCTACGGCCCGCCTGGCACCGGGAAGACCACCACCGCGCTTGC CATTGCTTACCAGCTCTACGGTCCAGAGCTCTACAAGTCAAGAGTTCTAGAACTTAATGC TAGTGATGATCGTGGAATTAATGTGGTGAGGACTAAGATCAAGGACTTTGCTGCTGTTGC TGTTGGTTCTGCACGAAAAGGCGGTTATCCCTGCCCACCATACAAGATTATTATACTAGA TGAAGCAGATTCGATGACAGAAGATGCCCAGAATGCTTTAAGGCGTACTATGGAGACTTA CTCCAAAGTGACAAGATTCTTTTTCATATGCAATTACATCAGCAGGATAATAGAACCACT TGCATCAAGATGTGCAAAGTTTAGATTCAAGCCTCTTTCAGAAGAAGTAATGAGCAATCG CATTTTGCATATATGCAATGAAGAAGGGCTCAGTCTTGATGCTCAGGCATTGGCTACACT AAGCACCATCTCTAATGGTGACCTCCGCCGTGCTATAACCTATCTTCAGAGCGCTGCTCG CTTATTTGGATCTTCTATTTCTTCTACTGACTTGATTAGTGTTTCAGGGGCTATCCCTGA AGACGTTGTCAAGTCATTGCTTGCATCTTGCAAATCTGGTGAATTTGATGTGGCAAACAA GGAAGTCAATAATATTATTGCAGATGGATACCCCGTTTCACAGTTGATCTCACAGTTTCT AGATGTGATAGTTAATGCCGATGATATTCCAGATGAGCAGAAGGCAAGAATATGTAAAAA GCTTGGGGAAGCAGATAAGTGCTTGGTCGATGGAGCGGATGAGTATTTACAGCTTTTGGA TGTGGCTAGTGAGACTATCCGCGCTCTTTTTGACATGCCACAAACGCTGGTCTTCTAAGA GAACATGGATTGGAAAGATGACGCAGGTGGCCATTTCTGCGAGGGATATCTTCTGTCTCC TTTCCAAGTTTAGGTTCTGGGGGAAGCTCATTTTCTCGACAGACTGTTGTGCCTTTTTTA TGTTTGTGATGGGGATTAAATAGTGTGAACTCCACCCTTGTAACCAACTGAATTGTGCAC CAGTGTGTCCATGGAAAGAATGGTTTTCGGCCTGTCATCTTGTACATCATGCATCATTTT CTTGTTCTGCTTATGGNTNGATGGAACCTTGCATTGGCCTTTTCCCCGCTCTTTAAAAAA AAAAAAAAAACCTCCGGGGGGGG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)