These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1673 fasta sequence [TGACTCCTCCCGCCGACTCCGCCGCCGCCGCCGATCCCCATCCATCCCGCGAGCAGAGCAGGAGGAGCGCGAGCGCGAGCGCCGCCGTTCATCCGCCCTTCTGCTTCCGCCGCGTCGCATCCCGATTAATGGCCGACGGTGAGGATATCCAGCCACTTGTATGTGACAATGGCACTGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTGGTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTGGGTGATGAGGCACAATCAAAAAGAGGTATCTTGACCTTGAAATACCCTATTGAGCATGGTATTGTGAACAACTGGGACGACATGGAGAAAATCTGGCGTCACACCTTCTACAATGAGCTGCGTGTTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACAGAGAGAAAATGACCCAAATCATGTTTGAGACATTCAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAACAGGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGCTGGATCTTGCTGGTCGTGATCTGACTGACTGCCTAATGAAGATCCTTACAGAAAGAGGTTATTCCTTTACAACAACTGCAGAGCGGGAAATTGTGAGAGACATAAGAGAGAAGCTTGCATATATTGCTCTTGATTATGAGCAGGAGCTGGAGACTGCCAAGAGCAGCTCCTCTGTTGAGAAGAGCTATGAGTTGCCAGATGGACAAGTCATCACAATTGGCGCAGAGAGGTTCAGGTGCCCAGAAGTGCTGTTCCAGCCCTCGCTGATTGGGATGGAAGCTCCGGGGATCCATGAGACCACCTACAACTCTATCATGAAGTGTGATGTAGATATCAGGAAGGATCTCTATGGTAACATTGTGCTTAGTGGAGGAACTACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATTACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGATGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAGTCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAAGTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATCCAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGTGATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTTGGCCGCCTCGGCCGTTCTGTGACTGCGGAACATTAGCTATGTATGTATATTTGCCTAAGTATTGGCTATATTAAAAAAAAAATGTACTTGTGTTCGATGTAATGGTTTCTAATTATACTTTTGTGTTTCTGTCAAAAA] [+] EMBL CB644540 [TGACTCCTCCCGCCGACTCCGCCGCCGCCGCCGATCCCCATCCATCCCGCGAGCAGAGCAGGAGGAGCGCGAGCGCGAGCGCCGCCGTTCATCCGCCCTTCTGCTTCCGCCGCGTCGCATCCCGATTAATGGCCGACGGTGAGGATATCCAGCCACTTGTATGTGACAATGGCACTGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTGGTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTGGGTGATGAGGCACAATCAAAAAGAGGTATCTTGACCTTGAAATACCCTATTGAGCATGGTATTGTGAACAACTGGGACGACATGGAGAAAATCTGGCGTCACACCTTCTACAATGAGCTGCGTGTTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACAGAGAGAAAATGACCCAAATCATGTTTGAGACATTCAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAACAGGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGCTGGATCTTGCTGGTCGTGATCTGACTGACTGCCTAATGAAGATCCTTACAGAAAGAGGTTATTCCTTTACAACAACTGCAGAGCGGGAAATTGTGAGAGACATAAGAGAGAAGCTTGCATATATTGCT ] [+] EMBL AK063598 [ CCCGCCGACTCCGCCGCCGCCGCCGATCCCCATCCATCCCGCGAGCAGAGCAGGAGGAGCGCGAGCGCGAGCGCCGCCGTTCATCCGCCCTTCTGCTTCCGCCGCGTCGCATCCCGATTAATGGCCGACGGTGAGGATATCCAGCCACTTGTATGTGACAATGGCACTGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTGGTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTGGGTGATGAGGCACAATCAAAAAGAGGTATCTTGACCTTGAAATACCCTATTGAGCATGGTATTGTGAACAACTGGGACGACATGGAGAAAATCTGGCATCACACCTTCTACAATGAGCTGCGTGTTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACAGAGAGAAAATGACCCAAATCATGTTTGAGACATTCAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAACAGGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGTTGGATCTTGCTGGTCGTGATCTGACTGACTGCCTAATGAAGATCCTTACAGAAAGAGGTTATTCCTTTACAACAACTGCAGAGCGGGAAATTGTGAGAGACATAAAAGAGAAGCTTGCATATATTGCTCTTGATTATGAGCAGGAGCTGGAGACTGCCAAGAGCAGCTCCTCTGTTGAGAAGAGCTATGAGTTGCCAGATGGACAAGTCATCACAATTGGCGCAGAGAGGTTCAGGTGCCCAGAAGTGCTGTTCCAGCCCTCGCTGATTGGGATGGAAGCTCCGGGGATCCATGAGACCACCTACAACTCTATCATGAAGTGTGATGTAGATATCAGGAAGGATCTCTATGGTAACATTGTGCTTAGTGGAGGAACTACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATTACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGATGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAGTCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAAGTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATCCAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGTGATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTTGGCCGCCTCGGCCGTTCTGTGACTGCGGAACATTAGCTATGTATGTATATTTGCCTAAGTAT ] [-] EMBL CB644541 [ AGTTGCCAGATGGACAAGTCATCACAATTGGCGCAGAGAGGTTCAGGTGCCCAGAAGTGCTGTTCCAGCCCTCGCTGATTGGGATGGAAGCTCCGGGGATCCATGAGACCACCTACAACTCTATCATGAAGTGTGATGTAGATATCAGGAAGGATCTCTATGGTAACATTGTGCTTAGTGGAGGAACTACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATTACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGATGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAGTCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAAGTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATCCAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGTGATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTTGGCCGCCTCGGCCGTTCTGTGACTGCGGAACATTAGCTATGTAGGTATATTTGCCTAAGTATTGGCTATATTAAAAAAAAAA ] [+] EMBL CB000562 [ ATGGAAGCTCCGGGGATCCATGAGACCACCTACAACTCTATCATGAAGTGTGATGTAGATATCAGGAAGGATCTCTATGGTAACATTGTGCTTAGTGGAGGAACTACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATTACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGATGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAGTCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAAGTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATCCAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGTGATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTTGGCCGCCTCGGCCGTTCTGTGACTGCGGAACATTAGC ] [+] EMBL BI797784 [ GAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGATGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAGTCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAAGTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATCCAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGTGATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTT GCCGCCTCGGCCGTTCTGTGACTGCGGAACATTAGCTATGTATGTATATTTGCCTAAGTATTGGCTATATTACTATGGTTGTGTACTTGTGTTCGATGTAATGGTTTCTAATTATACTTTTGTGTTTCTGTCAAAAA] consensusID : consensus_8908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [GCATGGTATTGTGAACAACTGGGACGACATGGAGAAAATCTGGCATCACACATTCTACAATGAGCTGCGTGTTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACAGAGNGAAAATGCCCCNAATNATGTTTGAGACATTCAAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGGCAGTGGTCGTACAANCAGGTATTTGTGCTTNATTCTGGTGATGGTGTNACTNACACAGTGCCCAACTCTNTTGACNGGNTATGGCACTTACCTCANNGACTATTTCTTCCGGGTNTGGGATCCTTNCTCGGNTCGTG] [+] EMBL OSAD89S [GCATGGTATTGTGAACAACTGGGACGACATGGAGAAAATCTGGCATCACACATTCTACAATGAGCTGCGTGTTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACAGAGNGAAAATGCCCCNAATNATGTTTGAGACATTCAAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGGCAGTGGTCGTACAANCAGGTATTTGTGCTTNATTCTGGTGATGGTGTNACTNACACAGTGCCCAACTCTNTTGACNGGNTATGGCACTTACCTCANNGACTATTTCTTCCGGGTNTGGGATCCTTNCTCGGNTCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8908#0 TGACTCCTCCCGCCGACTCCGCCGCCGCCGCCGATCCCCATCCATCCCGCGAGCAGAGCA 60 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 GGAGGAGCGCGAGCGCGAGCGCCGCCGTTCATCCGCCCTTCTGCTTCCGCCGCGTCGCAT 120 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 CCCGATTAATGGCCGACGGTGAGGATATCCAGCCACTTGTATGTGACAATGGCACTGGAA 180 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 TGGTCAAGGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTG 240 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 GTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTGGGTG 300 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 ATGAGGCACAATCAAAAAGAGGTATCTTGACCTTGAAATACCCTATTGAGCATGGTATTG 360 consensus_8908#1 -------------------------------------------------GCATGGTATTG 11 *********** consensus_8908#0 TGAACAACTGGGACGACATGGAGAAAATCTGGCGTCACACCTTCTACAATGAGCTGCGTG 420 consensus_8908#1 TGAACAACTGGGACGACATGGAGAAAATCTGGCATCACACATTCTACAATGAGCTGCGTG 71 ********************************* ****** ******************* consensus_8908#0 TTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACA 480 consensus_8908#1 TTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACA 131 ************************************************************ consensus_8908#0 GAGAGAAAATGACCCAAATCATGTTTGAGACATTCAA-TGCACCAGCAATGTATGTGGCT 539 consensus_8908#1 GAGNGAAAATGCCCCNAATNATGTTTGAGACATTCAAATGCACCAGCAATGTATGTGGCT 191 *** ******* *** *** ***************** ********************** consensus_8908#0 ATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAAC-AGGTATT-GTGCTTGATT 597 consensus_8908#1 ATTCAAGCTGTTCTTTCACTATATGGCAGTGGTCGTACAANCAGGTATTTGTGCTTNATT 251 ************************* ************** ******* ****** *** consensus_8908#0 CTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTA 657 consensus_8908#1 CTGGTGATGGTGTNACTNACACAGTGCCCAACTCTNTTG---ACNGGNTATGGCACTTAC 308 ************* *** ********** * ** * * * * ** consensus_8908#0 TTCTTCGGCTGGATCTTGCTGGTCGTGATCTGACTGACTGCCTAATGAAGATCCTTACAG 717 consensus_8908#1 CTCANNGACTATTTCTT-CCGGGTNTGGGATCCTTNCTCGGNTCGTG------------- 354 ** * ** **** * ** ** * * * * ** consensus_8908#0 AAAGAGGTTATTCCTTTACAACAACTGCAGAGCGGGAAATTGTGAGAGACATAAGAGAGA 777 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 AGCTTGCATATATTGCTCTTGATTATGAGCAGGAGCTGGAGACTGCCAAGAGCAGCTCCT 837 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 CTGTTGAGAAGAGCTATGAGTTGCCAGATGGACAAGTCATCACAATTGGCGCAGAGAGGT 897 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 TCAGGTGCCCAGAAGTGCTGTTCCAGCCCTCGCTGATTGGGATGGAAGCTCCGGGGATCC 957 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 ATGAGACCACCTACAACTCTATCATGAAGTGTGATGTAGATATCAGGAAGGATCTCTATG 1017 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 GTAACATTGTGCTTAGTGGAGGAACTACCATGTTCCCTGGCATTGCTGACAGGATGAGCA 1077 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 AGGAGATTACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGA 1137 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 GAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGA 1197 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 TGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCT 1257 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 TCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAG 1317 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 TCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAA 1377 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 GTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATC 1437 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 CAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGT 1497 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 GATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTTGGCCGCCTCGGCCGTTCTGTGA 1557 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 CTGCGGAACATTAGCTATGTATGTATATTTGCCTAAGTATTGGCTATATTAAAAAAAAAA 1617 consensus_8908#1 ------------------------------------------------------------ consensus_8908#0 TGTACTTGTGTTCGATGTAATGGTTTCTAATTATACTTTTGTGTTTCTGTCAAAAA 1673 consensus_8908#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||