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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1513 fasta sequence
[CCCTCTTCTGCTCCGTACGTACGTGTTGGGTGCGCGCGCGTTGTACTGGAGGAGCTGAGGAAGCGATTGATCGATGGATCATCGGTGGTGGCCGCGGCGGCGGCCGGAGCCGGCGGCCATCGACATCACGTGGGTCTCGTGCAGGGGCGTCAGGTCGTCCGTCCCCTTCCACACGCCCTGCCTCTACGCCTCCATCTACCTGCACCACCCGTCGCCGTCGCCTTCGTCGTGCGGGCGCCGCCGCCCGCACCGCGTCAAGACCGCCACGGACCGCGCCGGCGGCGGGAACCCGGAGTGGGACGCGCCGCTGCGGCTCTACCTCCCCTCCTCCTCCTCGTCGTCGCCGGCGACGTCGAGCGACAACAAGGACGAGGTTCTCTTGCGGTTCGAGCTCAAGTCGGAGGTGGCCGTGCTCGGGGACGTGCTGTCCGCGACCGCCGCCGTGCCGGTGTCCGAGCTCGTGGCGGACGGCGCGACGCGGCGCGTGTCGTACCAGCTCGCCGGGCCCGACGGGAAGCACCCCAACGGCGTCATCTCCTTCTCCTACGCCGTCCACGCCGCCGCCGCCGCCGACACGTCGTCGTCATCACCCAGCAGCGACGCCGACGACGACCGGAGGAGCACCACCACCACCACCACCAGCGGCAGCGAGTGCGACGAATACTCCATCACTCCACCTCGCTCAGCCGCATCCAGAGCGATCACTCTCCCTCCGCCGCCGCCGTCGTCGACGATGTACCCGGCAATAGACTGGCCGCCGACTGAGCAACTCATCCCCATGCTACTCTACCCGCCGGCGAAGCCTCATACTACGGCCATTGTCAAGGGCTCGACGTGCTACCCTCCTCCGCCACCGCCGTCGTCGACTCCTCCGGTGGAGCCCGTCGCGGTATTCCCGCCGCCGCCGTCGCCGGCGTGCGGCGTGTACTACCCGCCACCGACAGTGAGGGAGCCGGTCATCAACAGAAGCGGGATGTACCCGAAGGTAGACCTTGATATTCCGGTGAGTTGCTACCCGCCGCCGCCGACGGCGGCGACGATGTACGGCGGGGGATGCGGGTACGCGGCGGCGCCGGAGTGGGACGGCCGGTGGTTGCACGGTTGAATATATAGCACGTGCGTCATCGTCGTTGCTGCGCGCGGGTTCGATCGTTTCTTCATTTGTGCCGCGCGCCCTCTGCCTCGTTTTTTTAAATTATTTTTGTGTTTTAAATTTGTTTGTTTGCTTAAAGGTGTGT---GTTCACGCTAAAATTAGAAGTTTGATTGAAATTGAAACAATGTGA-CGGAAAAGTTGGAAGTTTGTGTGTGTAGGAAAGTTTAATGTGATGAAAAAGTTAAAAGTTTGAAGAAAAAATT-G-GGAACTAAA-CCAGACCTAAGTTTAAGTTTTGGGCATAGGCGGAGAATGTGGGCGGCCTGTAGTTCTTCTTTGCTGCTTCAATATACCCTTCCTACTGTATTTTGTAATTTTTTGAGAAAATATACTGTGCTACTCGTTGGAGTTCTAAAAAAAAAA]
[+] EMBL AK068281 [CCCTCTTCTGCTCCGTACGTACGTGTTGGGTGCGCGCGCGTTGTACTGGAGGAGCTGAGGAAGCGATTGATCGATGGATCATCGGTGGTGGCCGCGGCGGCGGCCGGAGCCGGCGGCCATCGACATCACGTGGGTCTCGTGCAGGGGCGTCAGGTCGTCCGTCCCCTTCCACACGCCCTGCCTCTACGCCTCCATCTACCTGCACCACCCGTCGCCGTCGCCTTCGTCGTGCGGGCGCCGCCGCCCGCACCGCGTCAAGACCGCCACGGACCGCGCCGGCGGCGGGAACCCGGAGTGGGACGCGCCGCTGCGGCTCTACCTCCCCTCCTCCTCCTCGTCGTCGCCGGCGACGTCGAGCGACAACAAGGACGAGGTTCTCTTGCGGTTCGAGCTCAAGTCGGAGGTGGCCGTGCTCGGGGACGTGCTGTCCGCGACCGCCGCCGTGCCGGTGTCCGAGCTCGTGGCGGACGGCGCGACGCGGCGCGTGTCGTACCAGCTCGCCGGGCCCGACGGGAAGCACCCCAACGGCGTCATCTCCTTCTCCTACGCCGTCCACGCCGCCGCCGCCGCCGACACGTCGTCGTCATCACCCAGCAGCGACGCCGACGACGACCGGAGGAGCACCACCACCACCACCACCAGCGGCAGCGAGTGCGACGAATACTCCATCACTCCACCTCGCTCAGCCGCATCCAGAGCGATCACTCTCCCTCCGCCGCCGCCGTCGTCGACGATGTACCCGGCAATAGACTGGCCGCCGACTGAGCAACTCATCCCCATGCTACTCTACCCGCCGGCGAAGCCTCATACTACGGCCATTGTCAAGGGCTCGACGTGCTACCCTCCTCCGCCACCGCCGTCGTCGACTCCTCCGGTGGAGCCCGTCGCGGTATTCCCGCCGCCGCCGTCGCCGGCGTGCGGCGTGTACTACCCGCCACCGACAGTGAGGGAGCCGGTCATCAACAGAAGCGGGATGTACCCGAAGGTAGACCTTGATATTCCGGTGAGTTGCTACCCGCCGCCGCCGACGGCGGCGACGATGTACGGCGGGGGATGCGGGTACGCGGCGGCGCCGGAGTGGGACGGCCGGTGGTTGCACGGTTGAATATATAGCACGTGCGTCATCGTCGTTGCTGCGCGCGGGTTCGATCGTTTCTTCATTTGTGCCGCGCGCCCTCTGCCTCGTTTTTTTAAATTATTTTTGTGTTTTAAATTTGTTTGTTTGCTTAAAGGTGTGT GTTCACGCTAAAATTAGAAGTTTGATTGAAATTGAAACAATGTGA CGGAAAAGTTGGAAGTTTGTGTGTGTAGGAAAGTTTAATGTGATGAAAAAGTTAAAAGTTTGAAGAAAAAATT G GGAACTAAA CCAGACCTAAGTTTAAGTTTTGGGCATAGGCGGAGAATGTGGGCGGCCTGTAGTTCTTCTTTGCTGCTTCAATATACCCTTCCTACTGTATTTTGTAATTTTTTGAGAAAATATACTGTGCTACTCG ]
[+] EMBL CB654836 [ TCCGTCCCCTTCCACACGCCCTGCCTCTACGCCTCCATCTACCTGCACCACCCGTCGCCGTCGCCTTCGTCGTGCGGGCGCCGCCGCCCGCACCGCGTCAAGACCGCCACGGACCGCGCCGGCGGCGGGAACCCGGAGTGGGACGCGCCGCTGCGGCTCTACCTCCCCTCCTCCTCCTCGTCGTCGCCGGCGACGTCGAGCGACAACAAGGACGAGGTTCTCTTGCGGTTCGAGCTCAAGTCGGAGGTGGCCGTGCTCGGGGACGTGCTGTCCGCGACCGCCGCCGTGCCGGTGTCCGAGCTCGTGGCGGACGGCGCGACGCGGCGCGTGTCGTACCAGCTCGCCGGGCCCGACGGGAAGCACCCCAACGGCGTCATCTCCTTCTCCTACGCCGTCCACGCCGCCGCCGCCGCCGACACGTCGTCGTCATCACCCAGCAGCGACGCCGACGACGACCGGAGGAGCACCACCACCACCACCACCAACGGCAGCGAGTGCGACGAATACTCCATCACTCCACCTCGCTCAGCCGCATCCAGAGCGATCACTCTCCCTCCGCCGCCGCCGTCGTCGACGATGTACCCGGCAATAGACTGGCCGCCGACTGAGCAACTCATCCCCATGCTACTCTACCCGCCGGCGAAGCCTCATACTACGGCCATTGTCAAGGGCTCGACGTGCTA ]
[-] EMBL CB684196 [ CTCCGCCGCCGCCGTTGTTGACGATGTACCCGGCAATAGACTGGCCGCCGACTGAGCAACTCATCCCCATGCTACTCTACCCGCCGGCGAAGCCTCATACTACGGCCATTGTCAAGGGCTCGACGTGCTACCCTCCTCCGCCACCGCCGTCGTCGACTCCTCCGGTGGAGCCCGTCGCGGTATTCCCGCCGCCGCCGTCGCCGGCGTGCGGCGTGTACTACCCGCCACCGACAGTGAGGGAGCCGGTCATCAACAGAAGCGGGATGTACCCGAAGGTAGACCTTGATATTCCGGTGAGTTGCTACCCGCCGCCGCCGACGGCGGCGACGATGTACGGCGGGGGATGCGGGTACGCGGCGGCGCCGGAGTGGGACGGCCGGTGGTTGCACGGTTGAATATATAGCACGTGCGTCATCGTCGTTGCTGCGCGCGGGTTCGATCGTTTCTTCATTTGTGCCGCGCGCCCTCTGCCTCGTTTTTTTAAATTATTTTTGTGTTTTAAATTTGTTTGTTTGCTTAAAGGTGTGT GTTCACGCTAAAATTAGAAGTTTGATTGAAATTGAAACAATGTGA CGGAAAAGTTGGAAGTTTGTGTGTGTAGGAAAGTTTAATGTGATGAAAAAGTTAAAAGTTTGA ]
[+] EMBL BM037957 [ CGCCGCCGCCGACGGC GCGACGATGTAC GCGGGGGAT CGGGTAC CGGCGGCGCCGGAGTGGGAC GCCGGTGGTTGCACGGTTGAATATATAGCACGTGCGTCATCGTCGTTGCTGCGCGCGGGTTCGATCGTTTCTTCATTTGTGCCGCGCGCCCTCTGCCTCGTTTTTTTAAATTATTTTTGTGTTTTAAATTTGTTTGTTTGCTTAAAGGTGTGTTTAGTTCACGCTAAAATTAGAAGTTTGATTGAAATTGAAACCATGTGACCGGAAAAGTTGGAAGTTTGTGTGTGTAGGAAAGTTTAATGTGATGGAAAAGTTAAAAGTTTGAAGAAAAAATTCGCGGAACTAAACCCAGACCTAAGTTTAAGTTTTGGGCATAGGCGGAGAATGT GGCGGCCTGTAGTTCTTCTTTGCTGCTTCAATATACCCTTCCTACTGTATTTTGTAATTTTTTGAG AAATATACTGTGCTACTGGTTGGAGTTCTAAAAAAAAAA]
consensusID : consensus_8910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 767 fasta sequence
[AAACTCGAGCTGTTTCTCCGACTGAGCAACTCATCCCCATGCTACTCTACCCGCCGGCGAAGCCTCATACTACGGCCATTGTCAAGGGCTCGACGTGCTACCCTCCTCCGCCACCGCCGTTGTTGACTCCTCCGGTGGAGCCCGTCGCGGTATTCCCGCCGCCGCCGTCGCCGGCGTGCGGCGTGTACTACCCGCCACCGACAGTGAGGGAGCCGGTCATCAACAGAAGCGGGATGTACCCGAAGGTAGACCTTGATATTCCGGTGAGTTGCTACCCGCCGCCGCCGACGGCGGCGACGATGTACGGCGGGGGATGCGGGTACGCGGCGGCGCCGGAGTGGGACGGCCGGTGGTTGCACGGTTGAATATATAGCACGTGCGTCATCGTCGTTGCTGCGCGCGGGTTCGATCGTTTCTTCATTTGTGCCGCGCGCCCTCTGCCTCGTTTTTTTAAATTATTTTTGTGTTTTAAATTTGTTTGTTTGCTTAAAGGTGTGTGTTCACGCTAAAATTAGAAGTTTGATTGAAATTGAAACAATGTGACGGAAAAGTTGGAAGTTTGTGTGTGTAGGAAAGTTTAATGTGATGAAAAAGTTAAAAGTTTGAAGAAAAAATTGGGAACTAAACCAGACCTAAGTTTAAGTTTTGGGCATAGGCGGAGAATGTGGGCGGCCTGTAGTTCTTCTTTGCTGCTTCAATATACCCTTCCTACTGTATTTTGTAATTTTTTGAGA-GAATATACTGTGCTACTCGTTGGAGTTCTATGA]
[-] EMBL CB619757 [AAACTCGAGCTGTTTCTCCGACTGAGCAACTCATCCCCATGCTACTCTACCCGCCGGCGAAGCCTCATACTACGGCCATTGTCAAGGGCTCGACGTGCTACCCTCCTCCGCCACCGCCGTTGTTGACTCCTCCGGTGGAGCCCGTCGCGGTATTCCCGCCGCCGCCGTCGCCGGCGTGCGGCGTGTACTACCCGCCACCGACAGTGAGGGAGCCGGTCATCAACAGAAGCGGGATGTACCCGAAGGTAGACCTTGATATTCCGGTGAGTTGCTACCCGCCGCCGCCGACGGCGGCGACGATGTACGGCGGGGGATGCGGGTACGCGGCGGCGCCGGAGTGGGACGGCCGGTGGTTGCACGGTTGAATATATAGCACGTGCGTCATCGTCGTTGCTGCGCGCGGGTTCGATCGTTTCTTCATTTGTGCCGCGCGCCCTCTGCCTCGTTTTTTTAAATTATTTTTGTGTTTTAAATTTGTTTGTTTGCTTAAAGGTGTGTGTTCACGCTAAAATTAGAAGTTTGATTGAAATTGAAACAATGTGACGGAAAAGTTGGAAGTTTGTGTGTGTAGGAAAGTTTAATGTGATGAAAAAGTTAAAAGTTTGAAGAAAAAATTGGGAACTAAACCAGACCTAAGTTTAAGTTTTGGGCATAGGCGGAGAATGTGGGCGGCCTGTAGTTCTTCTTTGCTGCTTCAATATACCCTTCCTACTGTATTTTGTAATTTTTTGAGA GAATATACTGTGCTACTCGTTGGAGTTCTATGA]
[-] EMBL CB654837 [ GCCACCGCCGTCGTNGACTCCTCCGGTGGAGCCCGTCGCGGTATTCCCGCCGCCGCCGTCGCCGGCGTGCGGCGTGTACTACCCGCCACCGACAGTGAGGGAGCCGGTCATCAACAGAAGCGGGATGTACCCGAAGGTAGACCTTGATATTCCGGTGAGTTGCTACCCGCCGCCGCCGACGGCGGCGACGATGTACGGCGGGGGATGCGGGTACGCGGCGGCGCCGGAGTGGGACGGCCGGTGGTTGCACGGTTGAATATATAGCACGTGCGTCATCGTCGTTGCTGCGCGCGGGTTCGATCGTTTCTTCATTTGTGCCGCGCGCCCTCTGCCTCGTTTTTTTAAATTATTTTTGTGTTTTAAATTTGTTTGTTTGCTTAAAGGTGTGTGTTCACGCTAAAATTAGAAGTTTGATTGAAATTGAAACAATGTGACGGAAAAGTTGGAAGTTTGTGTGTGTAGGAAAGTTTAATGTGATGAAAAAGTTAAAAGTTTGAAGAAAAAATTGGGAACTAAACCAGACCTAAGTTTAAGTTTTGGGCATAGGCGGAGAATGTGGGCGGCCTGTAGTTCTTCTTTGCTGCTTCAATATACCCTTCCTACTGTATTTTGTAATTTTTTGAAAGGAATATACTGTGCTACTCGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8910#0 CCCTCTTCTGCTCCGTACGTACGTGTTGGGTGCGCGCGCGTTGTACTGGAGGAGCTGAGG 60
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 AAGCGATTGATCGATGGATCATCGGTGGTGGCCGCGGCGGCGGCCGGAGCCGGCGGCCAT 120
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 CGACATCACGTGGGTCTCGTGCAGGGGCGTCAGGTCGTCCGTCCCCTTCCACACGCCCTG 180
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 CCTCTACGCCTCCATCTACCTGCACCACCCGTCGCCGTCGCCTTCGTCGTGCGGGCGCCG 240
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 CCGCCCGCACCGCGTCAAGACCGCCACGGACCGCGCCGGCGGCGGGAACCCGGAGTGGGA 300
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 CGCGCCGCTGCGGCTCTACCTCCCCTCCTCCTCCTCGTCGTCGCCGGCGACGTCGAGCGA 360
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 CAACAAGGACGAGGTTCTCTTGCGGTTCGAGCTCAAGTCGGAGGTGGCCGTGCTCGGGGA 420
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 CGTGCTGTCCGCGACCGCCGCCGTGCCGGTGTCCGAGCTCGTGGCGGACGGCGCGACGCG 480
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 GCGCGTGTCGTACCAGCTCGCCGGGCCCGACGGGAAGCACCCCAACGGCGTCATCTCCTT 540
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 CTCCTACGCCGTCCACGCCGCCGCCGCCGCCGACACGTCGTCGTCATCACCCAGCAGCGA 600
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 CGCCGACGACGACCGGAGGAGCACCACCACCACCACCACCAGCGGCAGCGAGTGCGACGA 660
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 ATACTCCATCACTCCACCTCGCTCAGCCGCATCCAGAGCGATCACTCTCCCTCCGCCGCC 720
consensus_8910#1 ------------------------------------------------------------
consensus_8910#0 GCCGTCGTCGACGATGTACCCGGCAATAGACTGGCCGCCGACTGAGCAACTCATCCCCAT 780
consensus_8910#1 --------------------AAACTCGAGCTGTTTCTCCGACTGAGCAACTCATCCCCAT 40
* ** * ***********************
consensus_8910#0 GCTACTCTACCCGCCGGCGAAGCCTCATACTACGGCCATTGTCAAGGGCTCGACGTGCTA 840
consensus_8910#1 GCTACTCTACCCGCCGGCGAAGCCTCATACTACGGCCATTGTCAAGGGCTCGACGTGCTA 100
************************************************************
consensus_8910#0 CCCTCCTCCGCCACCGCCGTCGTCGACTCCTCCGGTGGAGCCCGTCGCGGTATTCCCGCC 900
consensus_8910#1 CCCTCCTCCGCCACCGCCGTTGTTGACTCCTCCGGTGGAGCCCGTCGCGGTATTCCCGCC 160
******************** ** ************************************
consensus_8910#0 GCCGCCGTCGCCGGCGTGCGGCGTGTACTACCCGCCACCGACAGTGAGGGAGCCGGTCAT 960
consensus_8910#1 GCCGCCGTCGCCGGCGTGCGGCGTGTACTACCCGCCACCGACAGTGAGGGAGCCGGTCAT 220
************************************************************
consensus_8910#0 CAACAGAAGCGGGATGTACCCGAAGGTAGACCTTGATATTCCGGTGAGTTGCTACCCGCC 1020
consensus_8910#1 CAACAGAAGCGGGATGTACCCGAAGGTAGACCTTGATATTCCGGTGAGTTGCTACCCGCC 280
************************************************************
consensus_8910#0 GCCGCCGACGGCGGCGACGATGTACGGCGGGGGATGCGGGTACGCGGCGGCGCCGGAGTG 1080
consensus_8910#1 GCCGCCGACGGCGGCGACGATGTACGGCGGGGGATGCGGGTACGCGGCGGCGCCGGAGTG 340
************************************************************
consensus_8910#0 GGACGGCCGGTGGTTGCACGGTTGAATATATAGCACGTGCGTCATCGTCGTTGCTGCGCG 1140
consensus_8910#1 GGACGGCCGGTGGTTGCACGGTTGAATATATAGCACGTGCGTCATCGTCGTTGCTGCGCG 400
************************************************************
consensus_8910#0 CGGGTTCGATCGTTTCTTCATTTGTGCCGCGCGCCCTCTGCCTCGTTTTTTTAAATTATT 1200
consensus_8910#1 CGGGTTCGATCGTTTCTTCATTTGTGCCGCGCGCCCTCTGCCTCGTTTTTTTAAATTATT 460
************************************************************
consensus_8910#0 TTTGTGTTTTAAATTTGTTTGTTTGCTTAAAGGTGTGTGTTCACGCTAAAATTAGAAGTT 1260
consensus_8910#1 TTTGTGTTTTAAATTTGTTTGTTTGCTTAAAGGTGTGTGTTCACGCTAAAATTAGAAGTT 520
************************************************************
consensus_8910#0 TGATTGAAATTGAAACAATGTGACGGAAAAGTTGGAAGTTTGTGTGTGTAGGAAAGTTTA 1320
consensus_8910#1 TGATTGAAATTGAAACAATGTGACGGAAAAGTTGGAAGTTTGTGTGTGTAGGAAAGTTTA 580
************************************************************
consensus_8910#0 ATGTGATGAAAAAGTTAAAAGTTTGAAGAAAAAATTGGGAACTAAACCAGACCTAAGTTT 1380
consensus_8910#1 ATGTGATGAAAAAGTTAAAAGTTTGAAGAAAAAATTGGGAACTAAACCAGACCTAAGTTT 640
************************************************************
consensus_8910#0 AAGTTTTGGGCATAGGCGGAGAATGTGGGCGGCCTGTAGTTCTTCTTTGCTGCTTCAATA 1440
consensus_8910#1 AAGTTTTGGGCATAGGCGGAGAATGTGGGCGGCCTGTAGTTCTTCTTTGCTGCTTCAATA 700
************************************************************
consensus_8910#0 TACCCTTCCTACTGTATTTTGTAATTTTTTGAGAAAATATACTGTGCTACTCGTTGGAGT 1500
consensus_8910#1 TACCCTTCCTACTGTATTTTGTAATTTTTTGAGAGAATATACTGTGCTACTCGTTGGAGT 760
********************************** *************************
consensus_8910#0 TCTAAAAAAAAAA 1513
consensus_8910#1 TCTATGA------ 767
**** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||