These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1219 fasta sequence [CAAACTCTCTCTCTCTCTCTCTCTCTCTCTGAATCTCTGGATCTCTGAAAACTCTGAACATTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGTCTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTAGCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGTGCCGGCCGCTCCCTGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCTGGGACCTCCCCGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGTGCGGCGGCGGCGGCGGCGGCGGCGGCCAGCACCTCGTCGGCGTCAAGACGACGCTGCTCTTCCTCCGCGCGAAGCCGCCGTCGCGCACCCACTGGGTCATGCACGAGTACCGCCTCGCCGCCGCCGGCGCTGTCGCCGTCGCCGCCGCCGGACAGACAAAGCGCGGGAACCATAGTTGCATGGCTCAGCCAGGAGAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGCGACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCGCCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAAGAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACATGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGTTCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTTCTCCTTGTACCATAATGATTAGTAGGAGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTAAAGATTACTGAGCAGCAGCTGTGACATCTGTATCAATTGTAACTTGTAAGTTTCTCTTGATCATTTAAGAAGATAAGGAACCTCAA] [+] EMBL AK060509 [CAAACTCTCTCTCTCTCTCTCTCTCTCTCTGAATCTCTGGATCTCTGAAAACTCTGAACATTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGTCTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTAGCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGTGCCGGCCGCTCCCTGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCTGGGACCTCCCCGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGTGCGGCGGCGGCGGCGGCGGCGGCGGCCAGCACCTCGTCGGCGTCAAGACGACGCTGCTCTTCCTCCGCGCGAAGCCGCCGTCGCGCACCCACTGGGTCATGCACGAGTACCGCCTCGCCGCCGCCGGCGCTGTCGCCGTCGCCGCCGCCGGACAGACAAAGCGCGGGAACCATAGTTGCATGGCTCAGCCAGGAGAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGCGACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCGCCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAAGAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACATGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGTTCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTTCTCCTTGTACCATAATGATTAGTAGGAGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTAAAGATTACTGAGCAGCAGCTGTGACATCTGTATCAATTGTAACTTGTAAGTTTCTCTTGATCATTTATTAAGATAAGGAACCTCA ] [+] EMBL CB660609 [ CTCTGAACATTCCAAGAACTCATAAGTTACCCGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGTCTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTAGCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGTGCCGGCCGCTCCCCGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCTGGGACCTCCCCGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGTG ] [-] EMBL CB660610 [ AAGCCGGTGTTCCTGCGTGGCTTCGGGTGCGGCGGCGGCGGCGGCGGCGGCGGCCAGCACCTCGTCGGCGTCAAGACGACGCTGCTCTTCCTCCGCGCGAAGCCGCCGTCGCGCACCCACTGGGTCATGCACGAGTACCGCCTCGCCGCCGCCGGCGCTGTCGCCGTCGCCGCCGCCGGACAGACAAAGCGCGGGAACCATAGTTGCATGGCTCAGCCAGGAGAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGCGACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCGCCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAAGAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACATGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGTTCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTTCTCCTTGTACCATAATGATTAGTAGGAGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTAAAGATTACTGAGCAGCAGCTGTGACATCGGTATCAATTGTAACTTGTAAGTTTCTCTGGATCATTAAAGGAGATAAGGAACCTCAA] [-] EMBL CB675313 [ CCGGTGTTCCTGCGTGGCTTCGGGTGCGGCGGCGGCGGCGGCGGCGGCGGCCAGCACCTCGTCGGCGTCAAGACGACGCTGCTCTTCCTCCGCGCGAAGCCGCCGTCGCGCACCCACTGGGTCATGCACGAGTACCGCCTCGCCGCCGCCGGCGCTGTCGCCGTCGCCGCCGCCGGACAGACAAAGCGCGGGAACCATAGTTGCATGGCTCAGCCAGGAGAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGCGACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCGCCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAAGAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACATGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGTTCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTCCTCCTTGTACCATAATGATTAGTAGGAGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTAAAGATTACTGAGCAGCAGCTGTGACATCTGTATCAAAGGTAACTTGTAAGTTTCTCTTGATCATTTAAAAAAAAAAAGA ] [+] EMBL CA756003 [ tgCAGAGTTGCATGGCTCAGCCAGGAGAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGCGACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCGCCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAAGAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACATGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGTTCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTTCTCCTTGTACCATAATGATTAGTAGGAGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTAAAGATTACTGAGCAGCAnaaaaaaa ] consensusID : consensus_8919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [TGAAAACTCTGAACATTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGTCTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTAGCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGTGCCGGCCGCTCCCCGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCTGGGACCTCCCCGGTGCGGTTTTCTTGATCCGTTTTGGTTTCGAGGAGGTGCGGCGCCATTGCCAAGCTCGACCGAGCGGGAGACTGATCGTGAACTCTCTCCTTCTGTGCAGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGTGCG] [+] EMBL CB675312 [TGAAAACTCTGAACATTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGTCTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTAGCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGTGCCGGCCGCTCCCCGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCTGGGACCTCCCCGGTGCGGTTTTCTTGATCCGTTTTGGTTTCGAGGAGGTGCGGCGCCATTGCCAAGCTCGACCGAGCGGGAGACTGATCGTGAACTCTCTCCTTCTGTGCAGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8919#0 CAAACTCTCTCTCTCTCTCTCTCTCTCTCTGAATCTCTGGATCTCTGAAAACTCTGAACA 60 consensus_8919#1 ---------------------------------------------TGAAAACTCTGAACA 15 *************** consensus_8919#0 TTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGT 120 consensus_8919#1 TTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGT 75 ************************************************************ consensus_8919#0 CTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTA 180 consensus_8919#1 CTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTA 135 ************************************************************ consensus_8919#0 GCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGT 240 consensus_8919#1 GCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGT 195 ************************************************************ consensus_8919#0 TCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGT 300 consensus_8919#1 TCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGT 255 ************************************************************ consensus_8919#0 GCCGGCCGCTCCCTGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCT 360 consensus_8919#1 GCCGGCCGCTCCCCGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCT 315 ************* ********************************************** consensus_8919#0 GGGACCTCCCCGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGG 420 consensus_8919#1 GGGACCTCCCCGGTGC-GGTTTTCTTGAT-----CCGTTTTGGTTTCGAGGAGGT-GCGG 368 ************* ** ** * *** * ** * *** * ** * **** consensus_8919#0 CGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTG----GAAG 476 consensus_8919#1 CGCC-ATTGCCAAGCTCGACCGAGCGGGAGACTGATCGTGAACTCTCTCCTTCTGTGCAG 427 ** * * * * ** * * * * ** * * * * ** * ** consensus_8919#0 GCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGT-GCGGCGGCG-GCGGCG 534 consensus_8919#1 GCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCG 487 *** *** * ** ** *** * * * * * * ********* ****** consensus_8919#0 GCGGCGGCGGCCAGCACCTCGTCGGCGTCAAGACGACGCTGCTCTTCCTCCGCG-CGAAG 593 consensus_8919#1 GCGGCGGGTGGCGG-AGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAG 546 ******* * * * * * **** ** * *** * * * * ** ** consensus_8919#0 CCGCCGTCGCGCACCCACTGGGTCATGCACGAGTACCGCCTCGCCGCCGCCGGCGCTGTC 653 consensus_8919#1 AAGCCGGTGTTCCTGCGTGGCTTCGGGTGCG----------------------------- 577 **** * * * * ** * ** consensus_8919#0 GCCGTCGCCGCCGCCGGACAGACAAAGCGCGGGAACCATAGTTGCATGGCTCAGCCAGGA 713 consensus_8919#1 ------------------------------------------------------------ consensus_8919#0 GAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGC 773 consensus_8919#1 ------------------------------------------------------------ consensus_8919#0 GACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCG 833 consensus_8919#1 ------------------------------------------------------------ consensus_8919#0 CCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAA 893 consensus_8919#1 ------------------------------------------------------------ consensus_8919#0 GAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACA 953 consensus_8919#1 ------------------------------------------------------------ consensus_8919#0 TGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGT 1013 consensus_8919#1 ------------------------------------------------------------ consensus_8919#0 TCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTTCTCCTTGTACCATAATGATTAGTAGG 1073 consensus_8919#1 ------------------------------------------------------------ consensus_8919#0 AGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTA 1133 consensus_8919#1 ------------------------------------------------------------ consensus_8919#0 AAGATTACTGAGCAGCAGCTGTGACATCTGTATCAATTGTAACTTGTAAGTTTCTCTTGA 1193 consensus_8919#1 ------------------------------------------------------------ consensus_8919#0 TCATTTAAGAAGATAAGGAACCTCAA 1219 consensus_8919#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||