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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1594 fasta sequence
[AATTTGCTTTCTTAGTTTCTTCCTTATATTTTGGTGTGCAATTAATTCTTTTGCGTGTTCCGGAAAAAATGCATCATATATACAGTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGACGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAG-AAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGCTGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGCTCGCCGCTGCTGTACATCCCGCGGTTCTTCCGGCCGCTGACGAGCTCCAGCACCAGCACGCCGAAGCTGAACACGTCGGACTTCACCGAGAACACGCCGTCCATCGCGTACTCCGGCGACATGTACCCATATGTCCCGACGACTTTTCTGGTGTGCGAGTCGGTGTCGTCGCCGAAGATCCTCGCGACGCCGAAGTCGGAGATCTTGGGGTTCATGTCTCCGTCGAGCAGGATGTTGCCGGCCTTGAGATCCCTGTGGATGATCTTGAACCGGGAGTCCTGGTGCAGATACAGGAGGCCCCGTGCGATGCCGAGTATGATGTTAAATCGCTTCGACCAGTTCAGCTGAGCTGATCGAGCCTTGTCGAAGATGAAGTTGTCGAGGCTCTTGTTCTCCATGTACTCGTACACCAGCATCCTCTCCTCGCCATGGATGCAGCAGCCGAGAAGCCTGACAAGGTTCACATGCTGGAGCCTCGCGATGAGCATGACCTCGTTCTTGAACTCGTCCAGCCCCTGCGTCGAGAATTTGGACAGCCTCTTCACTGCCACTGTCTGCCCTCCATCCAATTCTCCCTTGTAGACAGGACCAAAACCACCTTCACCGAGCTTAGCCAAGTTCGCGAAATTGTCAGTGGAGAAGGCTATCGTGTTGAAGTCAAAGAGAGTGACATTCAATTCGTTGCTGTGCCTGGTTTCATCCTCCATTTTCCTGTCTTGGACTTGATTCAGAGGGATACTTGAGTCAAATGAGGTGAACCTTTGAGGACTCTGAAATCTCACTTTGTTTCTGAATAACTTGTCCCAGACGAAGAATGCAGCCAACGCCAGAAGAACAACACCAGATAGGCTTAGGACAACAGCGAGCACTGTGTTTTTCCTGCTGGAATCATCCCCATTGGTTGGCAAATCGGATGCGGCGAGACGCATGAACAGGTCCTCGCCGCCATAGGAGAACTTCCTGATGTCCACGAGCGGCGAGCTCCACATGATGCAGCCGCTCCCGCCTCCCCTGACGTCGGACGCGGCGTACGCCACGCAGGAGCAGTTGGCCAGGCACCTCGCCCTGCATTGATGGACGGC]
[+] EMBL CB649022 [AATTTGCTTTCTTAGTTTCTTCCTTATATTTTGGTGTGCAATTAATTCTTTTGCGTGTTCCGGAAAAAATGCATCATATATACAGTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGACGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAG AAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGCTGAGGTTGCCCATCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGCTCGCCGCTGCTGTACATCCCGCGGTTCTTCCGGCCGCTGACGAGCTCCAGCACCAGCACGCCGAAGCTGAACACGTCGGACTTCACCGAGAACACGCCGTCCATCGCGTACTCCGGCGACATGTACCCATATGTCCCGACGACTTTTCTGGTGTGCGAGTCGGTGTCGTCGCCGAAGATCCTCGCGACGCCGAA ]
[+] EMBL CB649020 [ TTTCTTAGTTTCCCCCTTATATTTTGGTGTGCAATTAATTCTTTTGCGTGTTCCGGAAAAAATGCATCATATATACAGCACCCTGAACTTTGCTGATGCTGGAATGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACCGTGCACTGGTCACCGGCCTTCAACGATGGTGACGGTGACGTCTTTGACGGTGCAGGTGGACGACCACTCACCGTCGGGCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAA AAGCCCGGGTGCCTCCGCTGCGGCACCACCGCGCTGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACTCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGGTCGACAGCTCCCCGCTGCTGTACATCCCGCGGTTCTTCCGGGCGCTGACGAa ]
[+] EMBL CB670838 [ CTGAACTTTGCTGATGCTGTAACGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGACGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAG AAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGCTGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGCTCGCCGCTGCTGTACATCCCGCGGTTCTTCCGGCCGCTGACGAGCTCCAGCACCAGCACGCCGAAGCTGAACACGTCGGACTTCACCGAGAACACGCCGTCCATCGCGTACTCCGGCGACATGTACCCATATGTCCCGACGACTTTTCTGGTGTGCGAGTCGGTGTCGTCGCCGAAGATCCTCGCGACGCCGAAGTCGGAGATCTTGGGGTTCATGTCTCCGTCGAGCAGGATGTTGCCGGCCTTGAGATCCCTGTGGATGATCTTGAACCGGGAGTCCTGGTGCAGATACAGGAGGCCCCGTGCGATGCCGAGTATGATGTTAAATCGCTTCGACCAGTTCAGCTGAGCTGATCGAGCCTTGTCGAAGATGAAGTTGTCGAGGCTCTTGTTCTCCATG ]
[-] EMBL C26734 [ nCACTCGCCGTNGGTCGAACCGCCGCCGNCGNCGCGGTCGCTGCAGAAAGCCCGGGTGCCTAGCCT CGGCACCANCGCGCTGAGGTTGCCCAACATCATGAACACCGCCGNCATG CTNGNCGGTCCTCCGGNCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCANCTCCGACCTGCTGTACCCCCCGCCGCCGCCGNCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGCT ]
[-] EMBL CB649021 [ TGATGTTAAATCGCTTCGACCAGTTCAGCTGAGCTGATCGAGCCTTGTCGAAGATGAAGTTGTCGAGGCTCTTGTTCTCCATGTACTCGTACACCAGCATCCTCTCCTCGCCATGGATGCAGCAGCCGAGAAGCCTGACAAGGTTCACATGCTGGAGCCTCGCGATGAGCATGACCTCGTTCTTGAACTCGTCCAGCCCCTGCGTCGAGAATTTGGACAGCCTCTTCACTGCCACTGTCTGCCCTCCATCCAATTCTCCCTTGTAGACAGGACCAAAACCACCTTCACCGAGCTTAGCCAAGTTCGCGAAATTGTCAGTGGAGAAGGCTATCGTGTTGAAGTCAAAGAGAGTGACATTCAATTCGTTGCTGTGCCTGGTTTCATCCTCCATTTTCCTGTCTTGGACTTGATTCAGAGGGATACTTGAGTCAAATGAGGTGAACCTTTGAGGACTCTGAAATCTCACTTTGTTTCTGAATAACTTGTCCCAGACGAAGAATGCAGCCAACGCCAGAAGAACAACACCAGATAGGCTTAGGACAACAGCGAGCACTGTGTTTTTCCTGCTGGAATCATCCCCATTGGTTGGCAAATCGGATGCGGCGAGACGCATGAACAGGTCCTCGCCGCCATAGGAGAACTTCCTGATGTCCACGAGCGGCGAGCTCCACATGATGCAGCCGCTCCCGCCTCCCCTGACGTCGGACGCGGCGTACGCCACGCAGGAGCAGTTGGCCAGGCACCTCGCCCTGCATTGATGGACGGC]
consensusID : consensus_8928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[TTTTTTTTTTTTTTTTTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGACGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAGAAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGCTGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGC]
[-] EMBL AU077945 [TTTTTTTTTTTTTTTTTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGACGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAGAAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGCTGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8928#0 AATTTGCTTTCTTAGTTTCTTCCTTATATTTTGGTGTGCAATTAATTCTTTTGCGTGTTC 60
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 CGGAAAAAATGCATCATATATACAGTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTG 120
consensus_8928#1 ---------TTTTTTTTTTTTTTTTTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTG 51
* * * * * ***********************************
consensus_8928#0 ATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGA 180
consensus_8928#1 ATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGA 111
************************************************************
consensus_8928#0 CGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGC 240
consensus_8928#1 CGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGC 171
************************************************************
consensus_8928#0 CGCCGCCGCCGCCGCGGTCGCTGCAGAAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGC 300
consensus_8928#1 CGCCGCCGCCGCCGCGGTCGCTGCAGAAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGC 231
************************************************************
consensus_8928#0 TGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCT 360
consensus_8928#1 TGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCT 291
************************************************************
consensus_8928#0 GCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGC 420
consensus_8928#1 GCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGC 351
************************************************************
consensus_8928#0 CGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACA 480
consensus_8928#1 CGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAG-GCGTTGCCCTCCCTCCACA 410
**************************************** *******************
consensus_8928#0 GCCTCCACGCGTGGCTGAGCAGGCTCGTCTGCTCGCCGCTGCTGTACATCCCGCGGTTCT 540
consensus_8928#1 GCCTCCACGCGTGGCTGAGCAGGCTCGTCTGC---------------------------- 442
********************************
consensus_8928#0 TCCGGCCGCTGACGAGCTCCAGCACCAGCACGCCGAAGCTGAACACGTCGGACTTCACCG 600
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 AGAACACGCCGTCCATCGCGTACTCCGGCGACATGTACCCATATGTCCCGACGACTTTTC 660
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 TGGTGTGCGAGTCGGTGTCGTCGCCGAAGATCCTCGCGACGCCGAAGTCGGAGATCTTGG 720
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 GGTTCATGTCTCCGTCGAGCAGGATGTTGCCGGCCTTGAGATCCCTGTGGATGATCTTGA 780
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 ACCGGGAGTCCTGGTGCAGATACAGGAGGCCCCGTGCGATGCCGAGTATGATGTTAAATC 840
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 GCTTCGACCAGTTCAGCTGAGCTGATCGAGCCTTGTCGAAGATGAAGTTGTCGAGGCTCT 900
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 TGTTCTCCATGTACTCGTACACCAGCATCCTCTCCTCGCCATGGATGCAGCAGCCGAGAA 960
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 GCCTGACAAGGTTCACATGCTGGAGCCTCGCGATGAGCATGACCTCGTTCTTGAACTCGT 1020
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 CCAGCCCCTGCGTCGAGAATTTGGACAGCCTCTTCACTGCCACTGTCTGCCCTCCATCCA 1080
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 ATTCTCCCTTGTAGACAGGACCAAAACCACCTTCACCGAGCTTAGCCAAGTTCGCGAAAT 1140
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 TGTCAGTGGAGAAGGCTATCGTGTTGAAGTCAAAGAGAGTGACATTCAATTCGTTGCTGT 1200
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 GCCTGGTTTCATCCTCCATTTTCCTGTCTTGGACTTGATTCAGAGGGATACTTGAGTCAA 1260
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 ATGAGGTGAACCTTTGAGGACTCTGAAATCTCACTTTGTTTCTGAATAACTTGTCCCAGA 1320
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 CGAAGAATGCAGCCAACGCCAGAAGAACAACACCAGATAGGCTTAGGACAACAGCGAGCA 1380
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 CTGTGTTTTTCCTGCTGGAATCATCCCCATTGGTTGGCAAATCGGATGCGGCGAGACGCA 1440
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 TGAACAGGTCCTCGCCGCCATAGGAGAACTTCCTGATGTCCACGAGCGGCGAGCTCCACA 1500
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 TGATGCAGCCGCTCCCGCCTCCCCTGACGTCGGACGCGGCGTACGCCACGCAGGAGCAGT 1560
consensus_8928#1 ------------------------------------------------------------
consensus_8928#0 TGGCCAGGCACCTCGCCCTGCATTGATGGACGGC 1594
consensus_8928#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||