cluster # 8938

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Oryza sativa
cluster # 8938 cluster # 8938 Sequences # 6 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8938#0 length = 455 sequences # 1
consensus_8938#1 length = 439 sequences # 1
consensus_8938#2 length = 432 sequences # 1

consensus_8938#3 length = 353 sequences # 1
consensus_8938#4 length = 280 sequences # 1
consensus_8938#5 length = 154 sequences # 1

consensusID : consensus_8938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [ATATAAGGGATTTTGAGTTTTTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTCTCCCTTTTTTAAAAAAGGGGAAATTTGGGGGCCTTAAATTAAATTCCCCCTTTAAGGGGGCTTTTTAAAATTCCCGGGCCCGGTTTTAAAAACCTTGGAATGGGAAAAACCCGGGGGTTCCCAAAATAAAACGGCTTGGAACAAACCCCCTTTTCCCCAGGGGGGTTAAAAAAAAAAAAGCCCCCCCCTATCCCCTTTCCAAAAAATTGCCCCCCCTTTTCCTCGGGGGTTTAAAGGTTTCCCCCTTTAAAAAAAAAACCCCTTTTCCTTTTTTTGGGGTTTCCCAAAGGTTTTTTTTTGCCCCCCCGGGG]

[+] EMBL CF307997             [ATATAAGGGATTTTGAGTTTTTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTCTCCCTTTTTTAAAAAAGGGGAAATTTGGGGGCCTTAAATTAAATTCCCCCTTTAAGGGGGCTTTTTAAAATTCCCGGGCCCGGTTTTAAAAACCTTGGAATGGGAAAAACCCGGGGGTTCCCAAAATAAAACGGCTTGGAACAAACCCCCTTTTCCCCAGGGGGGTTAAAAAAAAAAAAGCCCCCCCCTATCCCCTTTCCAAAAAATTGCCCCCCCTTTTCCTCGGGGGTTTAAAGGTTTCCCCCTTTAAAAAAAAAACCCCTTTTCCTTTTTTTGGGGTTTCCCAAAGGTTTTTTTTTGCCCCCCCGGGG]




>consensus_8938#0
ATATAAGGGATTTTGAGTTTTTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACCTTTTTTCTCCCTTTTTTAAAAAAGGGGAAATTTGGGGGCCTTA
AATTAAATTCCCCCTTTAAGGGGGCTTTTTAAAATTCCCGGGCCCGGTTTTAAAAACCTT
GGAATGGGAAAAACCCGGGGGTTCCCAAAATAAAACGGCTTGGAACAAACCCCCTTTTCC
CCAGGGGGGTTAAAAAAAAAAAAGCCCCCCCCTATCCCCTTTCCAAAAAATTGCCCCCCC
TTTTCCTCGGGGGTTTAAAGGTTTCCCCCTTTAAAAAAAAAACCCCTTTTCCTTTTTTTG
GGGTTTCCCAAAGGTTTTTTTTTGCCCCCCCGGGG

consensusID : consensus_8938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAACCAAAACCATAGTTTTTATGGACAAAACCCCAGGTTAAGTTTCTACCCCTTAAACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTACTCCTTAAACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTACCCCTTAAACCCAGGGAAAGGGCCCCGGGCCCCAATTTTAACCCCTTAAAACCATGGAAGGGGCCCCGGGCCCAAATTTTTACCCCTTAAACCCAGGGGGGGGCCCCCGGGCCCAAGTTTTTACCCCTTAAAACCATGTGAGGGGCCAAGGGGAAATTTTTTAAAACCGGGGGGAATAGCCCCTTAAGGGGGGGGAAATTTTGACCTGGGGGAAAAAAGGGGAAAAACGGTTC]

[+] EMBL CF316080             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAACCAAAACCATAGTTTTTATGGACAAAACCCCAGGTTAAGTTTCTACCCCTTAAACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTACTCCTTAAACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTACCCCTTAAACCCAGGGAAAGGGCCCCGGGCCCCAATTTTAACCCCTTAAAACCATGGAAGGGGCCCCGGGCCCAAATTTTTACCCCTTAAACCCAGGGGGGGGCCCCCGGGCCCAAGTTTTTACCCCTTAAAACCATGTGAGGGGCCAAGGGGAAATTTTTTAAAACCGGGGGGAATAGCCCCTTAAGGGGGGGGAAATTTTGACCTGGGGGAAAAAAGGGGAAAAACGGTTC]




>consensus_8938#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTAAAAAAAAACCAAAACCATAGTTTTTATGGACAAAACCCCAGGTTAAGTT
TCTACCCCTTAAACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTACTCCTTAAACCCAGG
GAAGGGCCCCCGGGCCCAAATTTTTACCCCTTAAACCCAGGGAAAGGGCCCCGGGCCCCA
ATTTTAACCCCTTAAAACCATGGAAGGGGCCCCGGGCCCAAATTTTTACCCCTTAAACCC
AGGGGGGGGCCCCCGGGCCCAAGTTTTTACCCCTTAAAACCATGTGAGGGGCCAAGGGGA
AATTTTTTAAAACCGGGGGGAATAGCCCCTTAAGGGGGGGGAAATTTTGACCTGGGGGAA
AAAAGGGGAAAAACGGTTC

consensusID : consensus_8938#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAACCTCCCTTTTAAAAAAATTTCAACTTGTTTTTTACCTCGGGTCCCTTTTAAGCCCGGGCCCCAATTAAAAGGGGGTGCGGGGGCCCCTCCCCAATTTCCTCCCAATACCCCCCCCCCTTTTACAGCCTTCTCCTTTAATCCCTTTTAGGGGCCCAGGGGGAATTTTTTTAAACCCGCGGGACTTTCCCCTTTTGGGGGGGGTAATTTTGACCTTGGGGGAAACATGGGCAAAACTGTTTCCCGGGGGAAAATGTTTTCCCCCCCCAATTCCCCCCAAAATTCAAGCCGGAAACATAAAGGGGAAACCCCGGGGGGCCCAATGGGGGGCCCCCCCCCCCTTTTTTGGGGGGGCCCCC]

[+] EMBL CF301726             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAACCTCCCTTTTAAAAAAATTTCAACTTGTTTTTTACCTCGGGTCCCTTTTAAGCCCGGGCCCCAATTAAAAGGGGGTGCGGGGGCCCCTCCCCAATTTCCTCCCAATACCCCCCCCCCTTTTACAGCCTTCTCCTTTAATCCCTTTTAGGGGCCCAGGGGGAATTTTTTTAAACCCGCGGGACTTTCCCCTTTTGGGGGGGGTAATTTTGACCTTGGGGGAAACATGGGCAAAACTGTTTCCCGGGGGAAAATGTTTTCCCCCCCCAATTCCCCCCAAAATTCAAGCCGGAAACATAAAGGGGAAACCCCGGGGGGCCCAATGGGGGGCCCCCCCCCCCTTTTTTGGGGGGGCCCCC]




>consensus_8938#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTGAAAAAAACCTCCCTTTTAAAAAAATTTCAACTTGTTTTTTACCTCGGGTCC
CTTTTAAGCCCGGGCCCCAATTAAAAGGGGGTGCGGGGGCCCCTCCCCAATTTCCTCCCA
ATACCCCCCCCCCTTTTACAGCCTTCTCCTTTAATCCCTTTTAGGGGCCCAGGGGGAATT
TTTTTAAACCCGCGGGACTTTCCCCTTTTGGGGGGGGTAATTTTGACCTTGGGGGAAACA
TGGGCAAAACTGTTTCCCGGGGGAAAATGTTTTCCCCCCCCAATTCCCCCCAAAATTCAA
GCCGGAAACATAAAGGGGAAACCCCGGGGGGCCCAATGGGGGGCCCCCCCCCCCTTTTTT
GGGGGGGCCCCC

consensusID : consensus_8938#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATCTTATGCCCCCATTGCATTACAAATTATTTGCTTATTCACCAAATTACATCACTGTCTAACCCAACCCAAAAAAACTGGGCCTAAATAAAATTCAAACCGTCGCCAGCACCCCCATAGCGAAAAAAAATGGCCCCCCAAGGGCAAACATCCCTTGGATACAAAAGTTTTTTTGTTCATGACCCCACAGAAAAACAGAAACTTAAACCGAATAAACCCCTAAAACTCAACTTGTATTTTCAGGAATATGAAACAAAAACCCCCTAAGGGTTTGCGTGTTGAAACATGCCTAATCCCCA]

[+] EMBL CF317428             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATCTTATGCCCCCATTGCATTACAAATTATTTGCTTATTCACCAAATTACATCACTGTCTAACCCAACCCAAAAAAACTGGGCCTAAATAAAATTCAAACCGTCGCCAGCACCCCCATAGCGAAAAAAAATGGCCCCCCAAGGGCAAACATCCCTTGGATACAAAAGTTTTTTTGTTCATGACCCCACAGAAAAACAGAAACTTAAACCGAATAAACCCCTAAAACTCAACTTGTATTTTCAGGAATATGAAACAAAAACCCCCTAAGGGTTTGCGTGTTGAAACATGCCTAATCCCCA]




>consensus_8938#3
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATCTTA
TGCCCCCATTGCATTACAAATTATTTGCTTATTCACCAAATTACATCACTGTCTAACCCA
ACCCAAAAAAACTGGGCCTAAATAAAATTCAAACCGTCGCCAGCACCCCCATAGCGAAAA
AAAATGGCCCCCCAAGGGCAAACATCCCTTGGATACAAAAGTTTTTTTGTTCATGACCCC
ACAGAAAAACAGAAACTTAAACCGAATAAACCCCTAAAACTCAACTTGTATTTTCAGGAA
TATGAAACAAAAACCCCCTAAGGGTTTGCGTGTTGAAACATGCCTAATCCCCA

consensusID : consensus_8938#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAAAATTCCTTCCAAATCTCCCCTCAAATGATCCAAATCCCCAGGGGCCCCAACAAGCGTTCAATTTTGCATGCAGTTGGGTCATATCACAAAGGTTTTAGGTCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCTTCTTCAAATCTTCCCCTTTTCCAAAAAACGTTGGATCCGCCCTTGTCCTACTCCTTCAGCCCATGTCAGGGCCCAAGGGCAAATTCT]

[+] EMBL CF302800             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAAAATTCCTTCCAAATCTCCCCTCAAATGATCCAAATCCCCAGGGGCCCCAACAAGCGTTCAATTTTGCATGCAGTTGGGTCATATCACAAAGGTTTTAGGTCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCTTCTTCAAATCTTCCCCTTTTCCAAAAAACGTTGGATCCGCCCTTGTCCTACTCCTTCAGCCCATGTCAGGGCCCAAGGGCAAATTCT]




>consensus_8938#4
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAAAATTCCT
TCCAAATCTCCCCTCAAATGATCCAAATCCCCAGGGGCCCCAACAAGCGTTCAATTTTGC
ATGCAGTTGGGTCATATCACAAAGGTTTTAGGTCCAGGAATGTTTTCATGGGTGGCCAAT
CGATCGATGATCTTCTTCAAATCTTCCCCTTTTCCAAAAAACGTTGGATCCGCCCTTGTC
CTACTCCTTCAGCCCATGTCAGGGCCCAAGGGCAAATTCT

consensusID : consensus_8938#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 154
fasta sequence

                              [AGAACCTCCTGTAGCTTACTTACTAGTTTGTGATGCTTGCTGTATTTTCTTCTAGTTCTTGGCTTGGTCTTAAGGAGTTTTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA]

[+] EMBL CF331353             [AGAACCTCCTGTAGCTTACTTACTAGTTTGTGATGCTTGCTGTATTTTCTTCTAGTTCTTGGCTTGGTCTTAAGGAGTTTTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA]




>consensus_8938#5
AGAACCTCCTGTAGCTTACTTACTAGTTTGTGATGCTTGCTGTATTTTCTTCTAGTTCTT
GGCTTGGTCTTAAGGAGTTTTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8938#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------- 50
consensus_8938#2      --TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------- 48
consensus_8938#0      ---------------------------ATATAAGGGATTTTGAGTTTTTT---------- 23
consensus_8938#5      --AGAACCTCCTGTAGCTTACTTACTAGTTTGTGATGCTTGCTGTATTTT---------- 48
consensus_8938#4      ---------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------- 41
consensus_8938#3      ------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAA 54
                                                  * *       **    * ****          

consensus_8938#1      -TTTTTTTTTTTTTTTTTTTTAAAAAAAAACC----------AAAACCATAG-TTT--TT 96
consensus_8938#2      -TTTTTTTTTTTTTTTTTTTTGAAAAAAACCTCCCTTTTAAAAAAATTTCAA-CTTGTTT 106
consensus_8938#0      -TTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAA 81
consensus_8938#5      -CTTCTAGTTCTTGGCTTGGTCTTAAGGAGTTTTTGATTAAAAAAAAAAAAA-AAAAAAA 106
consensus_8938#4      -TTTTCAAAAAAAAATTCCTTCCAAATCTCCCCTC------AAATGATCCAA-ATCCCCA 93
consensus_8938#3      ATCTTATGCCCCCATTGCATTACAAATTATTTGCTTATTCACCAAATTACATCACTGTCT 114
                         *                    **                 *      *         

consensus_8938#1      ATGGACAAAACCCCAGGTTAAGTTTCTACCCC--TTAAACCCAGGGAAGGGCCCCCGGGC 154
consensus_8938#2      TTTACCTCGGGTCCCTTTTAAGCCCGGGCCCCAATTAAAAGGGGGTGCGGGGGCCCCTCC 166
consensus_8938#0      AAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTT 141
consensus_8938#5      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA------------ 154
consensus_8938#4      GGGGCCCCAACAAGCGTTCAATTTTGCATGCAGTTGGGTCATATCACAAAGGTTTTAGGT 153
consensus_8938#3      AACCCAACCCAAAAAAACTGGGCCTAAATAAAATTCAAACCGTCGCCAGCACCCCCATAG 174
                                                                                  

consensus_8938#1      CCAAATT-TTTACTCCTTA-AACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTACCCCTT 212
consensus_8938#2      CCAA----TTTCCTCCCAA-TACCC---------CCCCCCCTTTTACAGCCTTCTCCTTT 212
consensus_8938#0      TTCTCCC-TTTTTTAAAAA-AGGGGAAATTTGGGGGCCTTAAATTAAATTCCCCCTTTAA 199
consensus_8938#5      ------------------------------------------------------------
consensus_8938#4      CCAGGAA-TGTTTTCATGGGTGGCCAATCGATCGATGATCTTCTTCAAATCTTCCCCTTT 212
consensus_8938#3      CGAAAAAAAATGGCCCCCCAAGGGCAAACATCCCTTGGATACAAAAGTTTTTTTGTTCAT 234
                                                                                  

consensus_8938#1      AAACCCAGGGAAAGGGCCCCGGGCCCCAATTTTAACCCCTTAAAACCATGGAAGGGGCCC 272
consensus_8938#2      AATCCCTTTTAGGGGCCCAGGGGGAATTTTTTTAAACCCGCGGGACTTTCCCCTT--TTG 270
consensus_8938#0      GGGGGCTTTTTAAAATTCCCGGGCCCGGTTTTAAAAACCTTGGAATGGGAAAAACCCGGG 259
consensus_8938#5      ------------------------------------------------------------
consensus_8938#4      ----TCCAAAAAACGTTGGATCCGCCCTTGTCCTACTCCTTCAGCCCATGTCAGGGCCCA 268
consensus_8938#3      GACCCCACAGAAAAACAGAAACTTAAACCGAATAAACCCCTAAAACTCAACTTGTATTTT 294
                                                                                  

consensus_8938#1      CGGGCCCAAATTTTTACCCCTT------AAACCCAGGGGGG---GGCCCCCGGGCCCAAG 323
consensus_8938#2      GGGGGGGTAATTTTGACCTTGGGGG---AAACATGGGCAAAACTGTTTCCCGGGGGAAAA 327
consensus_8938#0      GGTTCCCAAAATAAAACGGCTTGGAACAAACCCCCTTTTCCCCAGGGGGGTTAAAAAAAA 319
consensus_8938#5      ------------------------------------------------------------
consensus_8938#4      AGGGCAAATTCT------------------------------------------------ 280
consensus_8938#3      CAGGAATATGAAACAAAAACCCCCTAAGGGTTTGCGTGTTGAAACATGCCTAATCCCCA- 353
                                                                                  

consensus_8938#1      T-TTTTACCCCTTAAAACCATGTGAGGGGCCAAGGGGAAATTTTTTA----AAACCGGGG 378
consensus_8938#2      TGTTTTCCCCCCCCAATTCCCCCCAAAATTCAAGCCGGAAACATAAAGGGGAAACCCCGG 387
consensus_8938#0      AAAAGCCCCCCCCTATCCCCTTTCCAAAAAATTGCCCCCCCTTTTCCTCGGGGGTTTAAA 379
consensus_8938#5      ------------------------------------------------------------
consensus_8938#4      ------------------------------------------------------------
consensus_8938#3      ------------------------------------------------------------
                                                                                  

consensus_8938#1      GGAATAGCCCCTTAAGGGGGGGGAAATTTTGACCTGGGGGAAAAAAGGGGAAAAACGGTT 438
consensus_8938#2      GGG---GCCCAATGGGGGGCCCCCCCCCCCTTTTTTGGGGGGGCCCCC------------ 432
consensus_8938#0      GGTTTCCCCCTTTAAAAAAAAAACCCCTTTTCCTTTTTTTGGGGTTTCCCAAAGGTTTTT 439
consensus_8938#5      ------------------------------------------------------------
consensus_8938#4      ------------------------------------------------------------
consensus_8938#3      ------------------------------------------------------------
                                                                                  

consensus_8938#1      C--------------- 439
consensus_8938#2      ----------------
consensus_8938#0      TTTTGCCCCCCCGGGG 455
consensus_8938#5      ----------------
consensus_8938#4      ----------------
consensus_8938#3      ----------------