These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1279 fasta sequence [CCCCCGGCGACCACGTGCTGCCGGTGTTCACCGGCGAGTGCGGCGACTGCCGGCACTGCCTGTCGGAGGAGAGCAACCTGTGCGACCTCCTCCGCATCAACACCGACCGTGGCGCCATGATCGGCGACGGCCAGACCAGGTTCACCGCCAGGGG-AGGGCAGCCGGTGTACCACTTCCTCGGCACCTCCACGTTCAGCGAGTACACCGTCGTCCATGTCGGCTGCGTCGCCAAGATCCACCCAGCGGCGCCGCTCGACAAGGTCTGCGTCCTCAGCTGTGGCATCTCCACCGGATTTGGCGCGACTGTGAACGTCGCCAAGCCACCGAAGGGGTGCACAGTAGCCATATTCGGCCTGGGTGCAGTTGGTCTTGCTGCCATGGAAGGTGCAAGGATCTCTGGTGCTTCACGGATTATTGGCGTCGATTTGAACCCGGCCAAATTCGAACT-AGCTAAGAAGTTTGGGTGCACAGACTTTGTGAACCCAAAAGATTACGACAAGCCCGTTCAGCAGGTGATCATCGAGATGACCAACGGCGGCGTGGACCGCAGCGTGGAGTGCACCGGCAACGCCGCCGCCATGATCTCCGCCTTCGAGTGCGTCCACGACGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCGGGCAAGGACGCGGCGTTCAAGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGACCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAGATCGATGTCGCCGCCGGCGATCGACGGCGGCGGCGACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATGCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACATGGGTGGACACAAATTATATATACTGTGAATTTTCTGAAAATTTACAAGACAAATATGAAATTGCGCAAATTACGATAGCGGATAGCCTTTGGCTCGATCAATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATCTGCTCTCTCTAATGTAATGTGCAATCTATATATAACTAAATTATGAAACATAATGTGCAATCTGTCAATCTACATTCTGGTAT] [+] EMBL AK101288 [CCCCCGGCGACCACGTGCTGCCGGTGTTCACCGGCGAGTGCGGCGACTGCCGGCACTGCCTGTCGGAGGAGAGCAACCTGTGCGACCTCCTCCGCATCAACACCGACCGTGGCGCCATGATCGGCGACGGCCAGACCAGGTTCACCGCCAGGGG AGGGCAGCCGGTGTACCACTTCCTCGGCACCTCCACGTTCAGCGAGTACACCGTCGTCCATGTCGGCTGCGTCGCCAAGATCCACCCAGCGGCGCCGCTCGACAAGGTCTGCGTCCTCAGCTGTGGCATCTCCACCGGATTTGGCGCGACTGTGAACGTCGCCAAGCCACCGAAGGGGTGCACAGTAGCCATATTCGGCCTGGGTGCAGTTGGTCTTGCTGCCATGGAAGGTGCAAGGATCTCTGGTGCTTCACGGATTATTGGCGTCGATTTGAACCCGGCCAAATTCGAACT AGCTAAGAAGTTTGGGTGCACAGACTTTGTGAACCCAAAAGATTACGACAAGCCCGTTCAGCAGGTGATCATCGAGATGACCAACGGCGGCGTGGACCGCAGCGTGGAGTGCACCGGCAACGCCGCCGCCATGATCTCCGCCTTCGAGTGCGTCCACGACGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCGGGCAAGGACGCGGCGTTCAAGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGACCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAGATCGATGTCGCCGCCGGCGATCGACGGCGGCGGCGACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATGCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACATGGGTGGACACAAATTATATATACTGTGAATTTTCTGAAAATTTACAAGACAAATATGAAATTGCGCAAATTACGATAGCGGATAGCCTTTGGCTCGATCAATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATCTGCTCTCTCTAATGTAATGTGCAATCTATATATAACTAAATTATGAAACATAATGTGCAATCTGTCAATCTACATTCTGGTAT] [+] EMBL AU030274 [ ACCGCCAGGGGAAGGGCAGCCGGTGTACCACTTCCTCGGCACCTCCACGTTCAGCGAGTACACCGTCGTCCATGTCGGCTGCGTCGCCAAGATCCACCCAGCGGCGCCGCTCGACAAGGTCTGCGTCCTCAGCTGTGGCATCTCCACCGGATTTGGCGCGACTGTGAACGTCGCCAAGCCACCGAA GGGTGCACAGTAGCCATATTCGGCCTGGGTGCAGTTGGTCTTGCTGCCATGGAAGGTGCAAGGATCTCTGGTGCTTCACGGATTATTGGCGTCGATTTGAACCCGGCCAAATTCGAACTAAGCTAAGAAGTTTGGGTGCACAGACTTTGTGAACCCAAAAGATTACGACAAGCCCGTTCAGCAGGTGATCATCGAGATGA CAACGGCGGCGTTGACCG AACGTTGAGTTCACCGGCAngc ] [+] EMBL AU101480 [ GGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGCCCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCAC CACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAGATCGATGTCGCCGCCGGCGATCGACGGCGGCGGCGACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATGCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACATGGGTGGACACAAATTATATATACTGTGAATTTTCTGAAAATTTACAAGACAAATATGAAATTGCGCAAATTACGATAGCGGATAGCCTTTGGCTCGATCAATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATCTGCTCTCTCTAATGTAATGTGCAATCTATATATAACTAAATTATGAAAaaa ] consensusID : consensus_8947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 769 fasta sequence [CGACGTACGCACGCCGTCTCATCCACTCATCCATCATATATATTTTCAGTGATCAGCTGTGTCAATGATCTGAACCCTCTGCACGACGATGTCGCCGTCGACGACGACGACGACGATGCAGGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCCGGCAAGGACGCGGCGTTCAAGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGCCCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCC-AGATCGATGTCGCCGCCGGCGATCGACGGCG-GCGGCG-ACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATACCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACAGGGGTGGACACAAATTATAGTACTGTGAATTTTCTGAAAATTTACAAGACAAATAAGAAATTGCGCAAATTACAATAGCGGATTAGCCTTACGCTCGATCGATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATTTGCTCTCTCTAATGTAATGTGCAATCTATATATAATTACATTATGAAACAAAAAAAAGA] [-] EMBL CB618158 [CGACGTACGCACGCCGTCTCATCCACTCATCCATCATATATATTTTCAGTGATCAGCTGTGTCAATGATCTGAACCCTCTGCACGACGATGTCGCCGTCGACGACGACGACGACGATGCAGGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCCGGCAAGGACGCGGCGTTCAAGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGCCCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCC AGATCGATGTCGCCGCCGGCGATCGACGGCG GCGGCG ACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATACCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACAGGGGTGGACACAAATTATAGTACTGTGAATTTTCTGAAAATTTACAAGACAAATAAGAAATTGCGCAAATTACAATAGCGGATTAGCCTTACGCTCGATCGATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATTTGCTCTCTCTAATGTAATGTGCAATCTATATATAATTACATTATGAAACAAAAAAAAGA] [-] EMBL CB618174 [ TCCATCATATATATTTTCAGTGATCAGCTGTGTCAATGATCTGAACCCTCTGCACGACGATGTCGCCGTCGACGACGACGACGACGATGCAGGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCCGGCAAGGACGCGGCGTTCAAGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGCCCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCC AGATCGATGTCGCCGCCGGCGATCGACGGCG GCGGCG ACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATACCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACAGGGGTGGACACAAATTATAGTACTGTGAATTTTCTGAAAATTTACAAGACAAATAAGAAATTGCGCAAATTACAATAGCGGATTAGCCTTACGCTCGATCGATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATTTGCTCTCTCTAATGTAATGTGCAATCTATATATAATTACATTATGAAA ] [+] EMBL BI810408 [ CAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAAGATCGATGTCGCCGCCGGCGATCGAC GCGTGCGGCGTACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATACCTACAGC ATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACAGGGGTGGACACCAATTATAGTACTGTGAATTTTCTGAAAATTTACAAGAC AATATGAAATTGCGCAAATTACAATAGCGGATTAGCCTTAGGCTCGATCGATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCC CCTTTCTGTATTGCGCATTTGCTCTCTCTAATGTAATGT CAATCTATATATAATTACATTATGAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8947#0 CCCCCGGCGACCACGTGCTGCCGGTGTTCACCGGCGAGTGCGGCGACTGCCGGCACTGCC 60 consensus_8947#1 ------------------------------------------------------------ consensus_8947#0 TGTCGGAGGAGAGCAACCTGTGCGACCTCCTCCGCATCAACACCGACCGTGGCGCCATGA 120 consensus_8947#1 ------------------------------------------------------------ consensus_8947#0 TCGGCGACGGCCAGACCAGGTTCACCGCCAGGGGAGGGCAGCCGGTGTACCACTTCCTCG 180 consensus_8947#1 ------------------------------------------------------------ consensus_8947#0 GCACCTCCACGTTCAGCGAGTACACCGTCGTCCATGTCGGCTGCGTCGCCAAGATCCACC 240 consensus_8947#1 ------------------------------------------------------------ consensus_8947#0 CAGCGGCGCCGCTCGACAAGGTCTGCGTCCTCAGCTGTGGCATCTCCACCGGATTTGGCG 300 consensus_8947#1 ------------------------------------------------------------ consensus_8947#0 CGACTGTGAACGTCGCCAAGCCACCGAAGGGGTGCACAGTAGCCATATTCGGCCTGGGTG 360 consensus_8947#1 ------------------------------------------------------------ consensus_8947#0 CAGTTGGTCTTGCTGCCATGGAAGGTGCAAGGATCTCTGGTGCTTCACGGATTATTGGCG 420 consensus_8947#1 ------------------------------------------------------------ consensus_8947#0 TCGATTTGAACCCGGCCAAATTCGAACTAGCTAAGAAGTTTGGGTGCACAGACTTTGTGA 480 consensus_8947#1 ------------------------------------------------------CGACGT 6 * consensus_8947#0 ACCCAAAAGATTACGACAAGCCCGTTCAGCAGGTGATCATCGAGATGACCAACGGCGGCG 540 consensus_8947#1 ACGCACGCCGTCTCATCCA-CTCATCCATCATAT-ATATTTTCAGTGATCAGCTGTGTCA 64 ** ** * * * * * * * ** ** * ** * *** ** * * * * consensus_8947#0 TGGACCGCAGCGTGGAGTGCACCGGCAACGCCGCCGCCATGATCTCCGCCTTCGAGTGCG 600 consensus_8947#1 ATGATCTGAACCCT--CTGCAC-GACGATGTCGCCGTCGACGACGACGACGACGA-TGC- 119 ** * * * ***** * * * * ***** * * ** * *** *** consensus_8947#0 TCCACGACGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCGGGCAAGGACGCGGCGTTCA 660 consensus_8947#1 ------AGGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCCGGCAAGGACGCGGCGTTCA 173 * ******************************** ******************* consensus_8947#0 AGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACT 720 consensus_8947#1 AGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACT 233 ************************************************************ consensus_8947#0 ACAAGCCTCGCACCGACCTGACCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGC 780 consensus_8947#1 ACAAGCCTCGCACCGACCTGCCCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGC 293 ******************** *************************************** consensus_8947#0 TGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGA 840 consensus_8947#1 TGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGA 353 ************************************************************ consensus_8947#0 TGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAGATCGA 900 consensus_8947#1 TGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAGATCGA 413 ************************************************************ consensus_8947#0 TGTCGCCGCCGGCGATCGACGGCGGCGGCGACTGTATAAACGGAGAAAATAAGAGGCTAA 960 consensus_8947#1 TGTCGCCGCCGGCGATCGACGGCGGCGGCGACTGTATAAACGGAGAAAATAAGAGGCTAA 473 ************************************************************ consensus_8947#0 AACTACCTATGC-TACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTG 1019 consensus_8947#1 AACTACCTATACCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTG 533 ********** * *********************************************** consensus_8947#0 TTCATGGAGAACATGGGTGGACACAAATTATATATACTGTGAATTTTCTGAAAATTTACA 1079 consensus_8947#1 TTCATGGAGAACAGGGGTGGACACAAATTATA-GTACTGTGAATTTTCTGAAAATTTACA 592 ************* ****************** ************************** consensus_8947#0 AGACAAATATGAAATTGCGCAAATTACGATAGCGGAT-AGCCTTTGGCTCGATCAATTTG 1138 consensus_8947#1 AGACAAATAAGAAATTGCGCAAATTACAATAGCGGATTAGCCTTACGCTCGATCGATTTG 652 ********* ***************** ********* ****** ******** ***** consensus_8947#0 AGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATCTG 1198 consensus_8947#1 AGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATTTG 712 ********************************************************* ** consensus_8947#0 CTCTCTCTAATGTAATGTGCAATCTATATATAACTAAATTATGAAACATAATGTGCAATC 1258 consensus_8947#1 CTCTCTCTAATGTAATGTGCAATCTATATATAATTACATTATGAAACAAAAAAAAGA--- 769 ********************************* ** *********** ** * consensus_8947#0 TGTCAATCTACATTCTGGTAT 1279 consensus_8947#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||