These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8952#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 489 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATAAAGCCGGGGGCTTCCATTTTTTTAATTAAAATTGGCCCCCCCCAAAAAAATATAGGGGGAAAAAATCCCCTTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAAAAAAAACAAAAGCAAACCCGGGGGGGTAAAATAAAAAAACAATAAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGAATCAAAAATAAACATTTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAATTCCTTCAACCCGGGGGGTTTGGGGGCAAAAAAACTAAAAACCCCCCCCCCCCTGACTTTGTCAAACCCCATAATCCGGACAAATGCTTTGGGGTCCCCCTTTTTGGCCTCCTAAACCTCTTTGAACCCCGGGGGGGGGTAAGGGCCCCCAAACAGGGGCAGTTTCCA] [+] EMBL CF332833 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATAAAGGCCGGGCCTTCCATTTTTTTTATTAAAATTTGCCCCCCCCAAAAAAATTTTGTGGGAAAAAATCCCCTTTTTACTTTAAGTCAAAAAAAAATCGGGGGAAAAAAAAACAAAACCAAAGCCGGGGGGGTAAAATAAAAAAACGATAAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGAATCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAATTCTTTGAAACCGGGGGGTTTGGGGGCAAAAAAACTAAAAACCTGCCCCTGCCTGACTTTGTCAAACCCCATAATCCGGACAAATGCTTTGGGGTCCCCCTTTTTGGCCTCCTAAACCTCTTTGAACCCCGGGGGGGGGTAA ] [+] EMBL CF333467 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAATATATATCCGGGGGCTTCCATTTTTTTAATTAAAATTGGCCCCCCCCAAAAAAATATAGGGGAAAAAAATCCCCTTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAAAAAAAACAAAAGCAAACCCCGGGGGGGAAAATAAAAAAACAATAAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGATTCAAAAATAAACATTTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAATTCCTTCAACCCCGGGGGTTTGGAGGCAAAAAAACTAAAAACCCCCCCCCCCCTGACT ] [+] EMBL CF335401 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATAAAGCCGGGGGCTTCCATTTTTTTAATTAAAATTGGCCCCCCCCAAAAAAATATAGGGGGAAAAAATCCCCTTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAAAAAAAACAAAAGCAAACCCGGGGGGGTAAAATAAAAAAACAATAAACAACCGGGGAACCCCCAAAAAAGGGGGGGAAACTTTTTCGAATCAAAAATAAACAATTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAACTCCTTCAACCCGGGGGGTTTGGGGGCAAAAAAACTAAAAACCCCCCCCCCCCTGACTTTGTCAAACCCCATAATCCGGACAAATGCTTTGGGGGCCCCCTTTTGGGCCTCCTAAACCTCTTTGAACCCCGGGGGGGGGTAAGGGCCCCCAAACAGGGGCAGTTTCCA] consensusID : consensus_8952#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 418 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATATATAGCCCGGAGCTTCCATATTTTTAATTCACATATGCCCCACCCAACAACATATAGTCGTAGCAAATCCCCCTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAACAAAAACAAAACCAAACCCCGGCCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTCTTCGATTCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAATGACGGTTTATTTGCCACCAAACTCCTTAAACCCCGGGGGTTTGTAGGCAAAAAACCTGATAACCTGCCCCTGCCTGACTTTGTCAAACCCGATGATACGGACAAATGCTTTAGGGTCCCCC] [+] EMBL CF334854 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATATATAGCCCGGAGCTTCCATATTTTTAATTCACATATGCCCCACCCAACAACATATAGTCGTAGCAAATCCCCCTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAACAAAAACAAAACCAAACCCCGGCCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTCTTCGATTCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAATGACGGTTTATTTGCCACCAAACTCCTTAAACCCCGGGGGTTTGTAGGCAAAAAACCTGATAACC ] [+] EMBL CF298107 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATA A AGCCCGGGGCTTCCATATTTTTAATTCAAATATGCCCCACCCAAAAAAATATAGTCGGAGCAAATCCCCCTTTTACTTTAAGTCAAAAAAAAATCGGGGGAAACAAAAACAAAAGCAAAGCCCGGCCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGAATCAAAAATGAACAATTAAACAGGGTTTTTTTTGACAATGACGGTTTATTTGCCACCAAACTCCTTCAAACCCGGGGGTTTGTAGGCAAAAAAACTGATAACCTGCCCCTGCCTGACTTTGTCAAACCCGATGATACGGACAAATGCTTTAGGGTCCCCC] consensusID : consensus_8952#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAACCCGGACCTTCCATATTTTTAATTCAAATATGCCTCACCCAAAAAAATTTTGTGGTAACAAATCCCCCTTTTACTTTAAGAAAAAAAAAAATCGGGGGAAAAAAAAACAAAAGCAAAGCCCGGGCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGAATCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAATTTCTTCAAACCCGGGGGCTTGTAG] [+] EMBL CF335904 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAACCCGGACCTTCCATATTTTTAATTCAAATATGCCTCACCCAAAAAAATTTTGTGGTAACAAATCCCCCTTTTACTTTAAGAAAAAAAAAAATCGGGGGAAAAAAAAACAAAAGCAAAGCCCGGGCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGAATCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAATTTCTTCAAACCCGGGGGCTTGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8952#1 -----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 55 consensus_8952#2 -------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 53 consensus_8952#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 ***************************************************** consensus_8952#1 AAAAAAAATATATAGCCCGGAGCTTCCATATTTTTAATTCACATATGCCCCACCCAACAA 115 consensus_8952#2 AAAAAAAAAAAA--ACCCGGACCTTCCATATTTTTAATTCAAATATGCCTCACCCAAAAA 111 consensus_8952#0 AAAAAAAATAAA--GCCGGGGGCTTCCATTTTTTTAATTAAAATTGGCCCCCCCCAAAAA 118 ******** * * ** ** ******* ********* * ** *** * ***** ** consensus_8952#1 CATATAGTCGTAGCAAATCCCCCTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAACAAA 175 consensus_8952#2 AATTTTGTGGTAACAAATCCCCCTTTTACTTTAAGAAAAAAAAAAATCGGGGGAAAAAAA 171 consensus_8952#0 AATATAGGGGGAAAAAATCCCCTTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAAAAAA 178 ** * * * * ******** ******** *** ******************* *** consensus_8952#1 AACAAAACCAAACCCCGGCCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAA 235 consensus_8952#2 AACAAAAGCAAAGCCCGGGCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAA 231 consensus_8952#0 AACAAAAGCAAACCCGGGGGGGTAAAATAAAAAAACAATAAACAACCGGGGAACCCCCAA 238 ******* **** ** ** ******** ******* ** ******************** consensus_8952#1 AACAGGGGGGGAAACTTCTTCGATTCAAAAATGAACATTTAAACAGGGTTTTTTTTGACA 295 consensus_8952#2 AACAGGGGGGGAAACTTTTTCGAATCAAAAATGAACATTTAAACAGGGTTTTTTTTGACA 291 consensus_8952#0 AACAGGGGGGGAAACTTTTTCGAATCAAAAATAAACATTTAAACAGGGTTTTTTTTGACA 298 ***************** ***** ******** *************************** consensus_8952#1 ATGACGGTTTATTTGCCACCAAACTCCTTAAACCCCGGGGGTTTGTAGGCAAAAAACCTG 355 consensus_8952#2 AAAACGGTTTATTTGCCACCAAATTTCTTCAAACCCGGGGGCTTGTAG------------ 339 consensus_8952#0 AAAACGGTTTATTTGCCACCAAATTCCTTCAACCCGGGGGGTTTGGGGGCAAAAAAACTA 358 * ******************** * *** ** ** ***** *** * consensus_8952#1 ATAACCTGCCCCTGCCTGACTTTGTCAAACCCGATGATACGGACAAATGCTTTAGGGTCC 415 consensus_8952#2 ------------------------------------------------------------ consensus_8952#0 AAAACCCCCCCCCCCCTGACTTTGTCAAACCCCATAATCCGGACAAATGCTTTGGGGTCC 418 consensus_8952#1 CCC--------------------------------------------------------- 418 consensus_8952#2 ------------------------------------------------------------ consensus_8952#0 CCCTTTTTGGCCTCCTAAACCTCTTTGAACCCCGGGGGGGGGTAAGGGCCCCCAAACAGG 478 consensus_8952#1 ----------- consensus_8952#2 ----------- consensus_8952#0 GGCAGTTTCCA 489 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||