Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9026 cluster # 9026       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9026#0 length = 2451 sequences # 6  

consensusID : consensus_9026#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2451
fasta sequence
                              [AGCGCTAGCTTCACAAGCACACCACCTACCTCCTCGCTAGCTAGCTCGATCGCTTCCGGTCAAGCTCGAGCTAGGCGTTCTCGCGTTCATGGCGTCCGGGCAGCACCAACCCACCGTGCCGAGGTGGAAGCCGAGCCCGCCGCGGCCGCAGGGCCGCGAGGCCGACGACGTGGACCAGCCGCCGCAGTTCGACGCCGTCTCTGACATGAGCGCCTCCGTGCGCAGCACCGACGGGTTCCCCTTCGGCAGCGGCCGCTCCTCGTTCGCGCCGCCGCCGTTCCTGCCGGCGCGGCAGCCGTCGCTGGAGATCAGCGCGGCGGAGAACGGCGGCGGCGGCGGCGTCGCCCGCGAGCCGTCGTTGCGCCGGCCGGACCAGGGCGTCGTCCTCGCGTGGGAGGACCTGTGGGTGTCCGCCGCCGGCGGGAAGAGCGGCCGTGTCCCCATCCTCTGCGGCCTCAACGGCTACGCGCGCCCCGGCGAGGTGCTCGCCATCATGGGGCCCTCCGGCTGCGGCAAGTCCACACTTCTTGATGCGTTGGCAGGAAGGTTAGGTTCCAGTGTGAGCCAGAAGGGGGACATCCTGATCAATGGCCGGAGGCAAGCGCTGGCGTTCGGCACGTCGGCGTACGTGACGCAGGACGACGTGCTGATGAACACGCTGACGGTGCGGGAGGCGGTGCGGTACTCGGCGCAGCTGCAGCTGCCGAGCGGGATGAGCGCGGCGGCGAAGCGGGAGCGGGCGGAGGAGACGCTGCGGGAGATGGGGCTGGAGGGCGCGGCGGACACGCGGATCGGCGGGTGGGCGCACAAGGGGATCAGCGGCGGGCAGCGGCGGCGGGTGAGCATCTGCATGGAGATCCTCACGCGGCCGGCGCTGCTGTTCCTCGACGAGCCCACCAGCGGCCTCGACAGCGCCGCGTCGTACCACGTCGTCAGCCGCATCGCCCGCATGGCGCGCCGCGAGGGCATGACCGTCGTCGCCGCCGTGCACCAGCCCAGCACCGAGGTGTTCGGCCTCTTCCATGGCCTCTGCCTCCTCGCCTACGGCAAGACCGTCTTCTTCGGCCCCGCCGCCGACACCGCCCAGTTTTTTGCTTTGAGCGGGTTCCCTTGTCCATCATTGATGAACCCTTCAGACCACTTCCTGAGGACTATAAACAAGGACTTTGACAAGGATATCGAGGAAGGCATGGACGGGAAGAAGATGACGACTGCTCAAGCAATCGACACGCTTGTCAACTCCTACAAATCCTCCGTCCACTTGGAGAAAGTGACGCATCACATCCAAGACATACGCGCCACCGGAGGGGCAGTGGTGAAGAAGGAGGAGAGACCGAGCTTTCTGACGCAGACCTGGGTGCTCACGAAGAGGTCGTTCGTGAACATGTACAGGGACCTGGGCTATTACTGGCTGCGTTTCGCCATTTACATCGCACTGTGCCTCTGCGTCGGCACCATTTACTACAACATCGGCCACAGCTACGGATCCATCCAGGCTCGTGGCTCCATGCTCATGTTCGTCGCTGCCTTCCTCACCTTCATGGCCATCGGTGGCTTCCCATCTTTCGTCGAGGACATGAAGATATTTGGGAGGGAGAGGCTGAACGGGCACTACGGCGTGGGGTCATTCGTGATAGCGAACACGCTGTCGGCGACGCCGTACCTGGCGCTCATCTCGGTGGCGCCGGGCGCGATCGGCTACTACCTCACCGGGCTCCAGAGCAGCATCGACCACTTCGCCTACTTCGCGGTGGTGCTCTTCACGACCATGATGGTGGTGGAGGGGCTGATGATGATCGTGGCCAGCGCCGTGCCGGACTTCCTCATGGGCATCATCACCGGCGCCGGCATCCAGGGCGTCATGATGCTCAACGGCGGCTTCTTCCGCCTCCCCGACGACCTGCCCAAGCCGGTGTGGAAGTACCCCATGTACTACATCGCGTTCCACAAGTACGCCAACCAGGGGTTCTACAAGAACGAGTTCTTGGGGCTCACCTTCCCCAACAACCAGGCCGGCGGCGCCGCCACCATCACCGGCCACGAGATCCTGCGAGACTACTGGCAGGTGCAGCTGGGGTACAGCAAGTGGGTCGACCTCGCCATCCTCGGTGGGATGGTGGTGCTGTACAGGGTGCTCTTCTTCGTCATCGTCAAGCTCATCGAGAAGATGAAGCCCATGGTGCAGAGGCTCAGGTTCAGGAGCGACGCGCCGTCGGTGCACATCGCCGAGAATGGCTCGGCAGGAAGCCTTTGATCCAACATCGATTGGGGCAGTGGTTTTTACCCATAGGCATCTGATATATTAGTGGTGTGATATATGTGAACATTGTATATGCAAGGGTGAGATGATGTCAGTTTTTTTGTTTGAGAAAAGAAAAGGAAAAATGTTTTTGTACTACTCGAGAGTCTACCCAATATAGATTATGTATATATATATATATATTACTGAAA]

[+] EMBL AK120390             [AGCGCTAGCTTCACAAGCACACCACCTACCTCCTCGCTAGCTAGCTCGATCGCTTCCGGTCAAGCTCGAGCTAGGCGTTCTCGCGTTCATGGCGTCCGGGCAGCACCAACCCACCGTGCCGAGGTGGAAGCCGAGCCCGCCGCGGCCGCAGGGCCGCGAGGCCGACGACGTGGACCAGCCGCCGCAGTTCGACGCCGTCTCTGACATGAGCGCCTCCGTGCGCAGCACCGACGGGTTCCCCTTCGGCAGCGGCCGCTCCTCGTTCGCGCCGCCGCCGTTCCTGCCGGCGCGGCAGCCGTCGCTGGAGATCAGCGCGGCGGAGAACGGCGGCGGCGGCGGCGTCGCCCGCGAGCCGTCGTTGCGCCGGCCGGACCAGGGCGTCGTCCTCGCGTGGGAGGACCTGTGGGTGTCCGCCGCCGGCGGGAAGAGCGGCCGTGTCCCCATCCTCTGCGGCCTCAACGGCTACGCGCGCCCCGGCGAGGTGCTCGCCATCATGGGGCCCTCCGGCTGCGGCAAGTCCACACTTCTTGATGCGTTGGCAGGAAGGTTAGGTTCCAGTGTGAGCCAGAAGGGGGACATCCTGATCAATGGCCGGAGGCAAGCGCTGGCGTTCGGCACGTCGGCGTACGTGACGCAGGACGACGTGCTGATGAACACGCTGACGGTGCGGGAGGCGGTGCGGTACTCGGCGCAGCTGCAGCTGCCGAGCGGGATGAGCGCGGCGGCGAAGCGGGAGCGGGCGGAGGAGACGCTGCGGGAGATGGGGCTGGAGGGCGCGGCGGACACGCGGATCGGCGGGTGGGCGCACAAGGGGATCAGCGGCGGGCAGCGGCGGCGGGTGAGCATCTGCATGGAGATCCTCACGCGGCCGGCGCTGCTGTTCCTCGACGAGCCCACCAGCGGCCTCGACAGCGCCGCGTCGTACCACGTCGTCAGCCGCATCGCCCGCATGGCGCGCCGCGAGGGCATGACCGTCGTCGCCGCCGTGCACCAGCCCAGCACCGAGGTGTTCGGCCTCTTCCATGGCCTCTGCCTCCTCGCCTACGGCAAGACCGTCTTCTTCGGCCCCGCCGCCGACACCGCCCAGTTTTTTGCTTTGAGCGGGTTCCCTTGTCCATCATTGATGAACCCTTCAGACCACTTCCTGAGGACTATAAACAAGGACTTTGACAAGGATATCGAGGAAGGCATGGACGGGAAGAAGATGACGACTGCTCAAGCAATCGACACGCTTGTCAACTCCTACAAATCCTCCGTCCACTTGGAGAAAGTGACGCATCACATCCAAGACATACGCGCCACCGGAGGGGCAGTGGTGAAGAAGGAGGAGAGACCGAGCTTTCTGACGCAGACCTGGGTGCTCACGAAGAGGTCGTTCGTGAACATGTACAGGGACCTGGGCTATTACTGGCTGCGTTTCGCCATTTACATCGCACTGTGCCTCTGCGTCGGCACCATTTACTACAACATCGGCCACAGCTACGGATCCATCCAGGCTCGTGGCTCCATGCTCATGTTCGTCGCTGCCTTCCTCACCTTCATGGCCATCGGTGGCTTCCCATCTTTCGTCGAGGACATGAAGATATTTGGGAGGGAGAGGCTGAACGGGCACTACGGCGTGGGGTCATTCGTGATAGCGAACACGCTGTCGGCGACGCCGTACCTGGCGCTCATCTCGGTGGCGCCGGGCGCGATCGGCTACTACCTCACCGGGCTCCAGAGCAGCATCGACCACTTCGCCTACTTCGCGGTGGTGCTCTTCACGACCATGATGGTGGTGGAGGGGGTGATGATGATCGTGGCCAGCGCCGTGCCGGACTTCCTCATGGGCATCATCACCGGCGCCGGCATCCAGGGCGTCATGATGCTCAACGGCGGCTTCTTCCGCCTCCCCGACGACCTGCCCAAGCCGGTGTGGAAGTACCCCATGTACTACATCGCGTTCCACAAGTACGCCAACCAGGGGTTCTACAAGAACGAGTTCTTGGGGCTCACCTTCCCCAACAACCAGGCCGGCGGCGCCGCCACCATCACCGGCCACGAGATCCTGCGAGACTACTGGCAGGTGCAGCTGGGGTACAGCAAGTGGGTCGACCTCGCCATCCTCGGTGGGATGGTGGTGCTGTACAGGGTGCTCTTCTTCGTCATCGTCAAGCTCATCGAGAAGATGAAGCCCATGGTGCAGAGGCTCAGGTTCAGGAGCGACGCGCCGTCGGTGCACATCGCCGAGAATGGCTCGGCAGGAAGCCTTTGATCCAACATCGATTGGGGCAGTGGTTTTTACCCATAGGCATCTGATATATTAGTGGTGTGATATATGTGAACATTGTATATGCAAGGGTGAGATGATGTCAGTTTTTTTGTTTGAGAAAAGAAAAGGAAAAATGTTTTTGTACTACTCGAGAGTCTACCCAATATAGATTATGTATATATATATATATATTACTGAAA]
[+] EMBL CB639393             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGTGTGAGCCAGAAGGGGGACATCCTGATCAATGGCCGGAGGCAAGCGCTGGCGTTCGGCACGTCGGCGTACGTGACGCAGGACGACGTGCTGATGAACACGCTGACGGTGCGGGAGGCGGTGCGGTACTCGGCGCAGCTGCAGCTGCCGAGCGGGATGAGCGCGGCGGCGAAGCGGGAGCGGGCGGAGGAGACGCTGCGGGAGATGGGGCTGGAGGGCGCGGCGGACACGCGGATCGGCGGGTGGGCGCACAAGGGGATCAGCGGCGGGCAGCGGCGGCGGGTGAGCATCTGCATGGAGATCCTCACGCGGCCGGCGCTGCTGTTCCTCGACGAGCCCACCAGCGGCCTCGACAGCGCCGCGTCGTACCACGTCGTCAGCCGCATCGCCCGCATGGCGCGCCGCGAGGGCATGACCGTCGTCGCCGCCGTGCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB620418             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCGCTCGGCACGTCGGCGTACGTGACGCAGGACGACGTGCTGATGAACACGCTGACGGTGCGGGAGGCGGTGCGGTACTCGGCGCAGCTGCAGCTGCCGAGCGGGATGAGCGCGGCGGCGAAGCGGGAGCGGGCGGAGGAGACGCTGCGGGAGATGGGGCTGGAGGGCGCGGCGGACACGCGGATCGGCGGGTGGGCGCACAAGGGGATCAGCGGCGGGCAGCGGCGGCGGGTGAGCATCTGCATGGAGATCCTCACGCGGCCGGCGCTGCTGTTCCTCGACGAGCCCACCAGCGGCCTCGACAGCGCCGCGTCGTACCACGTCGTCAGCCGCATCGCCCGCATGGCGCGCCGCGAGGGCATGACCGTCGTCGCCGCCGTGCACCAGCCCAGCACCGAGGTGTTCGGCCTCTTCCATGGCCTCTGCCTCCTCGCCTACGGCAAGACCGTCTTCTTCGGCCCCGCCGCCGACACCGCCCAGTTTTTTGCTTTGAGCGGGTTCCCTTGTCCATCATTGATGAACCCTTCAGACCACTTCCTGAGGACTATAAACAAGGACTTTGACAAGGATATCGAGGAAGGCATGGACGGGAAGAAGATGACGACTGCTCAAGCAATCGACACGCTTGTCAACTCCTACAAATCCTCCGTCCACTTGGAGAGAGTGACGCATCACATCCAAGACATACGCGCCACCGGAGGGGCAGTGGTGAAGAAGGAGGAGAGACCGAGCTTTCTGACGCAGACCTGGGTGCTCACGAAGAGGTCGTTCGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF312925             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGATATTTGGGAGGGAGAGGCTGAACGGGCACTACGGCGTGGGGTCATTCGTGATAGCGAACACGCTGTCGGCGACGCCGTACCTGGCGCTCATCTCGGTGGCGCCGGGCGCGATCGGCTACTACCTCACCGGGCTCCAGAGCAGCATCGACCACTTCGCCTACTTCGCGGTGGTGCTCTTCACGACCATGATGGTGGTGGAGGGGCTGATGATGATCGTGGCCAGCGCCGTGCCGGACTTCCTCATGGGCATCATCACCGGCGCCGGCATCCAGGGCGTCATGATGCTCAACGGCGGCTTCTTCCGCCTCCCCGACGACCTGCCCAAGCCGGTGTGGAAGTACCCCATGTACTACATCGCGTTCCACAAGTACGCCAACCAGGGGTTCTACAAGAACGAGTTCTTGGGGCTCACCTTCCCCAACAACCAGGCCGGCGGCGCCGCCACCATCACCGGCCACGAGATCCTGCGAGACTACTGGCAGGTGCAGCTGGGGTACAGCAAGTGGGTCGACCTCGCCATC                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB620419             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCGGCTACTACCTCACCGGGCTCCAGAGCAGCATCGACCACTTCGCNTACTTCGCGGTGGTGCTCTTCACGACCATGATGGTGGTGGAGGGGCTGATGATGATCGTGGCCAGCGCCGTGCCGGACTTCCTCATGGGCATCATCACCGGCGCCGGCATCCAGGGCGTCATGATGCTCAACGGCGGCTTCTTCCGCCTCCCCGACGACCTGCCCAAGCCGGTGTGGAAGTACCCCATGTACTACATCGCGTTCCACAAGTACGCCAACCAGGGGTTCTACAAGAACGAGTTCTTGGGGCTCACCTTCCCCAACAACCAGGCCGGCGGCGCCGCCACCATCACCGGCCACGAGATCCTGCGAGACTACTGGCAGGTGCAGCTGGGGTACAGCAAGTGGGTCGACCTCGCCATCCTCGGTGGGATGGTGGTGCTGTACAGGGTGCTCTTCTTCGTCATCGTCAAGCTCATCGAGAAGATGAAGCCCATGGTGCAGAGGCTCAGGTTCAGGAGCGACGCGCCGTCGGTGCACATCGCCGAGAATAGCTCGGCAGGAAGCCTTTGATCCAACATCGATTGGGGCAGTGGTTTTTACCCATAGGCATCTGATATATTAGTGGTGTGATATATGTGAACATTGTATATGCAAGGGTGAGATGATGTCAGTTTTTTTGTTTGAGAAAAGAAAAGGAAAAATGTTTTTGTACTACTCGAGAGTCTACCCAATATAGAGTATGTATATATATATATATA         ]
[-] EMBL CF312926             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGAGATCCTGCGAGACTACTGGCAGGTGCAGCTGGGGTACAGCAAGTGGGTCGACCTCGCCATCCTCGGTGGGATGGTGGTGCTGTACAGGGTGCTCTTCTTCGTCATCGTCAAGCTCATCGAGAAGATGAAGCCCATGGTGCAGAGGCTCAGGTTCAGGAGCGACGCGCCGTCGGTGCACATCGCCGAGAATGGCTCGGCAGGAAGCCTTTGATCCAACATCGATTGGGGCAGTGGTTTTTACCCATAGGCATCTGATATATTAGTGGTGTGATATATGTGAACATTGTATATGCAAGGGTGAGATGATGTCAGTTTTTTTGTTTGAGAAAAGAAAGGGAAAAATGTTTTTGTACTAaaaaaaaa                                             ]


>consensus_9026#0 AGCGCTAGCTTCACAAGCACACCACCTACCTCCTCGCTAGCTAGCTCGATCGCTTCCGGT CAAGCTCGAGCTAGGCGTTCTCGCGTTCATGGCGTCCGGGCAGCACCAACCCACCGTGCC GAGGTGGAAGCCGAGCCCGCCGCGGCCGCAGGGCCGCGAGGCCGACGACGTGGACCAGCC GCCGCAGTTCGACGCCGTCTCTGACATGAGCGCCTCCGTGCGCAGCACCGACGGGTTCCC CTTCGGCAGCGGCCGCTCCTCGTTCGCGCCGCCGCCGTTCCTGCCGGCGCGGCAGCCGTC GCTGGAGATCAGCGCGGCGGAGAACGGCGGCGGCGGCGGCGTCGCCCGCGAGCCGTCGTT GCGCCGGCCGGACCAGGGCGTCGTCCTCGCGTGGGAGGACCTGTGGGTGTCCGCCGCCGG CGGGAAGAGCGGCCGTGTCCCCATCCTCTGCGGCCTCAACGGCTACGCGCGCCCCGGCGA GGTGCTCGCCATCATGGGGCCCTCCGGCTGCGGCAAGTCCACACTTCTTGATGCGTTGGC AGGAAGGTTAGGTTCCAGTGTGAGCCAGAAGGGGGACATCCTGATCAATGGCCGGAGGCA AGCGCTGGCGTTCGGCACGTCGGCGTACGTGACGCAGGACGACGTGCTGATGAACACGCT GACGGTGCGGGAGGCGGTGCGGTACTCGGCGCAGCTGCAGCTGCCGAGCGGGATGAGCGC GGCGGCGAAGCGGGAGCGGGCGGAGGAGACGCTGCGGGAGATGGGGCTGGAGGGCGCGGC GGACACGCGGATCGGCGGGTGGGCGCACAAGGGGATCAGCGGCGGGCAGCGGCGGCGGGT GAGCATCTGCATGGAGATCCTCACGCGGCCGGCGCTGCTGTTCCTCGACGAGCCCACCAG CGGCCTCGACAGCGCCGCGTCGTACCACGTCGTCAGCCGCATCGCCCGCATGGCGCGCCG CGAGGGCATGACCGTCGTCGCCGCCGTGCACCAGCCCAGCACCGAGGTGTTCGGCCTCTT CCATGGCCTCTGCCTCCTCGCCTACGGCAAGACCGTCTTCTTCGGCCCCGCCGCCGACAC CGCCCAGTTTTTTGCTTTGAGCGGGTTCCCTTGTCCATCATTGATGAACCCTTCAGACCA CTTCCTGAGGACTATAAACAAGGACTTTGACAAGGATATCGAGGAAGGCATGGACGGGAA GAAGATGACGACTGCTCAAGCAATCGACACGCTTGTCAACTCCTACAAATCCTCCGTCCA CTTGGAGAAAGTGACGCATCACATCCAAGACATACGCGCCACCGGAGGGGCAGTGGTGAA GAAGGAGGAGAGACCGAGCTTTCTGACGCAGACCTGGGTGCTCACGAAGAGGTCGTTCGT GAACATGTACAGGGACCTGGGCTATTACTGGCTGCGTTTCGCCATTTACATCGCACTGTG CCTCTGCGTCGGCACCATTTACTACAACATCGGCCACAGCTACGGATCCATCCAGGCTCG TGGCTCCATGCTCATGTTCGTCGCTGCCTTCCTCACCTTCATGGCCATCGGTGGCTTCCC ATCTTTCGTCGAGGACATGAAGATATTTGGGAGGGAGAGGCTGAACGGGCACTACGGCGT GGGGTCATTCGTGATAGCGAACACGCTGTCGGCGACGCCGTACCTGGCGCTCATCTCGGT GGCGCCGGGCGCGATCGGCTACTACCTCACCGGGCTCCAGAGCAGCATCGACCACTTCGC CTACTTCGCGGTGGTGCTCTTCACGACCATGATGGTGGTGGAGGGGCTGATGATGATCGT GGCCAGCGCCGTGCCGGACTTCCTCATGGGCATCATCACCGGCGCCGGCATCCAGGGCGT CATGATGCTCAACGGCGGCTTCTTCCGCCTCCCCGACGACCTGCCCAAGCCGGTGTGGAA GTACCCCATGTACTACATCGCGTTCCACAAGTACGCCAACCAGGGGTTCTACAAGAACGA GTTCTTGGGGCTCACCTTCCCCAACAACCAGGCCGGCGGCGCCGCCACCATCACCGGCCA CGAGATCCTGCGAGACTACTGGCAGGTGCAGCTGGGGTACAGCAAGTGGGTCGACCTCGC CATCCTCGGTGGGATGGTGGTGCTGTACAGGGTGCTCTTCTTCGTCATCGTCAAGCTCAT CGAGAAGATGAAGCCCATGGTGCAGAGGCTCAGGTTCAGGAGCGACGCGCCGTCGGTGCA CATCGCCGAGAATGGCTCGGCAGGAAGCCTTTGATCCAACATCGATTGGGGCAGTGGTTT TTACCCATAGGCATCTGATATATTAGTGGTGTGATATATGTGAACATTGTATATGCAAGG GTGAGATGATGTCAGTTTTTTTGTTTGAGAAAAGAAAAGGAAAAATGTTTTTGTACTACT CGAGAGTCTACCCAATATAGATTATGTATATATATATATATATTACTGAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)