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Oryza sativa
cluster # 9050 cluster # 9050       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9050#0 length = 2281 sequences # 2  
consensus_9050#1 length = 2098 sequences # 2  
consensus_9050#2 length = 130 sequences # 2  

consensusID : consensus_9050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2281
fasta sequence
                              [CCAGATAGGTAGGCAGGCAGACATGCGTGTCGCCGCGGCGGCGGCGGCGGCGGCCATCCGCCCCACTGCCGCGCTCCTCCTCCTCTTCCCGCCTCACCGCCGCACCACCTCTCTGCGCCGCTCCTCGCTCCCCTTCGCTCGCCCGCGGCGCCACTCTACCACCACCACCACCGCGGAGTCACACCCGAAGCCCAACGAAAGCAACGCCGCCCGCCGCCGCCGCGCCCGCGACTCGCCCGAGGGCCTCCTCAAGGCCAAGCTCGACATGTGCTCCCGCGACAACGACCTCCCCACCGCACTCGCCCTCTACGAAGCCGCCATCTCCCCCGATTCCCTCATCCCGCTCTCCCTCGGTCACTACAACTGCCTCCTCTACCTCTGCGCCAACGCCGCCGCCGCAGACTCCTCGTCCCCCGATGCCGCCCAGCGTGGCTTCGACATCTTCTCCAGGATGGAGGCTGACGGCGTCCAACCCAACGAGGCCACCCTCACCATCCTCGCCCGCCTCGCCGCCGCCCGCCGCGACCCCGCCATGGCCTTCTCCATCGTCCGCCGCATGGCCACCGCCGGCACCGCGCCGCACCTCCGCTCCTACGGCCCCGCCCTCTTCGCCTACTGCGACGCTGGAGACGCCGACGGCGCCACGGAGGTGGAGGCTCACATGGACGCCTCCGGGGTGGTGCCCGAGGAGGCCGAGCTCGCCGCGCTGCTCCGCGTCAACACTGCCCGTGGGAGACCCGACCAGGTGTACAGGCTCCTGCACAGGGCGCGCGTCCTTCTTCGCCAGGTGGCCGACGCAACCGCCCAGCTACTCGAGTCCTGGTTCGCCTCCCACGCCGCCTCAGAGGCCGGTCTGGACCACTGGGACGCCACCAAGGTGAAGCAAGGCCTGCGCAATGGCGGCGGCGGCTGGCATGGCCAGGGCTGGCTCGGCAAGGGCCAATGGACCGTTGCCCGAACCGACATGGACAAGGATGGCACCTGCCACCGCTGCGGGGAGAAGCTTGTCTGCATTGACATCGATCCATCAGAGACACACAGCTTTGCTGAGTCTGTCGCTCAGATAGCCATCAATCGTGACGCCAATTTCGTCAAGTTTCAGAAATGGCTCGAGTGCCACGGACCATTCGATGCCGTTATTGACGCTGCTAATGTTGGCCTTTACAATCGTAACAGTTTCAGTTTTTATGAGGTGAACCGGGTTGTAAATGGCATACAGAGAATAACTAAATCAAAGAAATTGCCACTGATAATTTTGCATAAGAACCGAGTAAATGGTGGACCTGCAAAACTTCCGCAGAATCAAAAGCTTCTTGAGAGTTGGCAGAGGGCTGGAGCACTATATGCTACACCTCCTGGTTCTAATGATGATTGGTATTGGCTGTACGCTGCTGTTATATACCGGTCATTGCTTGTTACAAATGATGAGATGCGGGACCACTTGTTTCAACTACTTGGCACTAGTTTTTTTCCAAGATGGAAGGAGAACCATCAGGTTTGTCTCTCATTGCAGAAGTGAACCACACAAATCTGTGTTCTTTTGTAGAATGCTGCACAGTACAACCCATTGAGTAAGAGATATTTCAAGTTCTTTTGCACGGCAGCGTATCCTGTGCACCCGCTCACCTTGGTGCACTCATGCACTCACGCGACATGGGACCTTCGATCTCCATCGGACGGATATAAGATGAGAGAGTCTTCTTTTTACAAAATAACCCTTCGATTCATCTTCTTGTCTCCCGTTCAACCACTTTCCCCAAATCTATCCCCTCTGTGAGGCGTCCATGGCAGCTTTGAATCTCGAAAAATAAAACAATGCTCGACGGAGATGGCCGCTAGAAATTAAGATTAATCAAGATTCCAGCATGCAGCCGTCAAATCCTTGCTCAACGATATGTATGATCTCAACCTCAGGATCTTTGGGTTGATTGCATGATATATATGGCATGCCAAAATTTCGAATCAAACAAGAAATTCCGATCGGATATGCCTTTGATGCACACATCTGCAACCCCCGGGCAAAGACTCATCCATTCCATCCCATGGGCAAGAACTCTTCTCTCTACAGAGTCAGGTACACTGCGCCGCAGCTGCTCCATCGGCCGAACACCATGGCCGTCGCCCTGGACACGCTCGCCCGCGCATCGTCCCTCTCCAACAAGCTGGACAACCACACGCACCTTGAGGCGTGACATGCCACTGGCCGCGCCGCCGCGCTCTGGATGTGCTATCTCTGTCGCCAAACATGGCTTAATTTGAGCCGCCATTGACGTCGGATAGA]

[+] EMBL AK101528             [CCAGATAGGTAGGCAGGCAGACATGCGTGTCGCCGCGGCGGCGGCGGCGGCGGCCATCCGCCCCACTGCCGCGCTCCTCCTCCTCTTCCCGCCTCACCGCCGCACCACCTCTCTGCGCCGCTCCTCGCTCCCCTTCGCTCGCCCGCGGCGCCACTCTACCACCACCACCACCGCGGAGTCACACCCGAAGCCCAACGAAAGCAACGCCGCCCGCCGCCGCCGCGCCCGCGACTCGCCCGAGGGCCTCCTCAAGGCCAAGCTCGACATGTGCTCCCGCGACAACGACCTCCCCACCGCACTCGCCCTCTACGAAGCCGCCATCTCCCCCGATTCCCTCATCCCGCTCTCCCTCGGTCACTACAACTGCCTCCTCTACCTCTGCGCCAACGCCGCCGCCGCAGACTCCTCGTCCCCCGATGCCGCCCAGCGTGGCTTCGACATCTTCTCCAGGATGGAGGCTGACGGCGTCCAACCCAACGAGGCCACCCTCACCATCCTCGCCCGCCTCGCCGCCGCCCGCCGCGACCCCGCCATGGCCTTCTCCATCGTCCGCCGCATGGCCACCGCCGGCACCGCGCCGCACCTCCGCTCCTACGGCCCCGCCCTCTTCGCCTACTGCGACGCTGGAGACGCCGACGGCGCCACGGAGGTGGAGGCTCACATGGACGCCTCCGGGGTGGTGCCCGAGGAGGCCGAGCTCGCCGCGCTGCTCCGCGTCAACACTGCCCGTGGGAGACCCGACCAGGTGTACAGGCTCCTGCACAGGGCGCGCGTCCTTCTTCGCCAGGTGGCCGACGCAACCGCCCAGCTACTCGAGTCCTGGTTCGCCTCCCACGCCGCCTCAGAGGCCGGTCTGGACCACTGGGACGCCACCAAGGTGAAGCAAGGCCTGCGCAATGGCGGCGGCGGCTGGCATGGCCAGGGCTGGCTCGGCAAGGGCCAATGGACCGTTGCCCGAACCGACATGGACAAGGATGGCACCTGCCACCGCTGCGGGGAGAAGCTTGTCTGCATTGACATCGATCCATCAGAGACACACAGCTTTGCTGAGTCTGTCGCTCAGATAGCCATCAATCGTGACGCCAATTTCGTCAAGTTTCAGAAATGGCTCGAGTGCCACGGACCATTCGATGCCGTTATTGACGCTGCTAATGTTGGCCTTTACAATCGTAACAGTTTCAGTTTTTATGAGGTGAACCGGGTTGTAAATGGCATACAGAGAATAACTAAATCAAAGAAATTGCCACTGATAATTTTGCATAAGAACCGAGTAAATGGTGGACCTGCAAAACTTCCGCAGAATCAAAAGCTTCTTGAGAGTTGGCAGAGGGCTGGAGCACTATATGCTACACCTCCTGGTTCTAATGATGATTGGTATTGGCTGTACGCTGCTGTTATATACCGGTCATTGCTTGTTACAAATGATGAGATGCGGGACCACTTGTTTCAACTACTTGGCACTAGTTTTTTTCCAAGATGGAAGGAGAACCATCAGGTTTGTCTCTCATTGCAGAAGTGAACCACACAAATCTGTGTTCTTTTGTAGAATGCTGCACAGTACAACCCATTGAGTAAGAGATATTTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB679160             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAAGATGGAAGGAGAACCATCAGGTTTGTCTCTCATTGCAGAAGTGAACCACACAAATCTGTGTTCTTTTGTAGAATGCTGCACAGTACAACCCATTGAGTAAGAGATATTTCAAGTTCTTTTGCACGGCAGCGTATCCTGTGCACCCGCTCACCTTGGTGCACTCATGCACTCACGCGACATGGGACCTTCGATCTCCATCGGACGGATATAAGATGAGAGAGTCTTCTTTTTACAAAATAACCCTTCGATTCATCTTCTTGTCTCCCGTTCAACCACTTTCCCCAAATCTATCCCCTCTGTGAGGCGTCCATGGCAGCTTTGAATCTCGAAAAATAAAACAATGCTCGACGGAGATGGCCGCTAGAAATTAAGATTAATCAAGATTCCAGCATGCAGCCGTCAAATCCTTGCTCAACGATATGTATGATCTCAACCTCAGGATCTTTGGGTTGATTGCATGATATATATGGCATGCCAAAATTTCGAATCAAACAAGAAATTCCGATCGGATATGCCTTTGATGCACACATCTGCAACCCCCGGGCAAAGACTCATCCATTCCATCCCATGGGCAAGAACTCTTCTCTCTACAGAGTCAGGTACACTGCGCCGCAGCTGCTCCATCGGCCGAACACCATGGCCGTCGCCCTGGACACGCTCGCCCGCGCATCGTCCCTCTCCAACAAGCTGGACAACCACACGCACCTTGAGGCGTGACATGCCACTGGCCGCGCCGCCGCGCTCTGGATGTGCTATCTCTGTCGCCAAACATGGCTTAATTTGAGCCGCCATTGACGTCGGATAGA]


>consensus_9050#0 CCAGATAGGTAGGCAGGCAGACATGCGTGTCGCCGCGGCGGCGGCGGCGGCGGCCATCCG CCCCACTGCCGCGCTCCTCCTCCTCTTCCCGCCTCACCGCCGCACCACCTCTCTGCGCCG CTCCTCGCTCCCCTTCGCTCGCCCGCGGCGCCACTCTACCACCACCACCACCGCGGAGTC ACACCCGAAGCCCAACGAAAGCAACGCCGCCCGCCGCCGCCGCGCCCGCGACTCGCCCGA GGGCCTCCTCAAGGCCAAGCTCGACATGTGCTCCCGCGACAACGACCTCCCCACCGCACT CGCCCTCTACGAAGCCGCCATCTCCCCCGATTCCCTCATCCCGCTCTCCCTCGGTCACTA CAACTGCCTCCTCTACCTCTGCGCCAACGCCGCCGCCGCAGACTCCTCGTCCCCCGATGC CGCCCAGCGTGGCTTCGACATCTTCTCCAGGATGGAGGCTGACGGCGTCCAACCCAACGA GGCCACCCTCACCATCCTCGCCCGCCTCGCCGCCGCCCGCCGCGACCCCGCCATGGCCTT CTCCATCGTCCGCCGCATGGCCACCGCCGGCACCGCGCCGCACCTCCGCTCCTACGGCCC CGCCCTCTTCGCCTACTGCGACGCTGGAGACGCCGACGGCGCCACGGAGGTGGAGGCTCA CATGGACGCCTCCGGGGTGGTGCCCGAGGAGGCCGAGCTCGCCGCGCTGCTCCGCGTCAA CACTGCCCGTGGGAGACCCGACCAGGTGTACAGGCTCCTGCACAGGGCGCGCGTCCTTCT TCGCCAGGTGGCCGACGCAACCGCCCAGCTACTCGAGTCCTGGTTCGCCTCCCACGCCGC CTCAGAGGCCGGTCTGGACCACTGGGACGCCACCAAGGTGAAGCAAGGCCTGCGCAATGG CGGCGGCGGCTGGCATGGCCAGGGCTGGCTCGGCAAGGGCCAATGGACCGTTGCCCGAAC CGACATGGACAAGGATGGCACCTGCCACCGCTGCGGGGAGAAGCTTGTCTGCATTGACAT CGATCCATCAGAGACACACAGCTTTGCTGAGTCTGTCGCTCAGATAGCCATCAATCGTGA CGCCAATTTCGTCAAGTTTCAGAAATGGCTCGAGTGCCACGGACCATTCGATGCCGTTAT TGACGCTGCTAATGTTGGCCTTTACAATCGTAACAGTTTCAGTTTTTATGAGGTGAACCG GGTTGTAAATGGCATACAGAGAATAACTAAATCAAAGAAATTGCCACTGATAATTTTGCA TAAGAACCGAGTAAATGGTGGACCTGCAAAACTTCCGCAGAATCAAAAGCTTCTTGAGAG TTGGCAGAGGGCTGGAGCACTATATGCTACACCTCCTGGTTCTAATGATGATTGGTATTG GCTGTACGCTGCTGTTATATACCGGTCATTGCTTGTTACAAATGATGAGATGCGGGACCA CTTGTTTCAACTACTTGGCACTAGTTTTTTTCCAAGATGGAAGGAGAACCATCAGGTTTG TCTCTCATTGCAGAAGTGAACCACACAAATCTGTGTTCTTTTGTAGAATGCTGCACAGTA CAACCCATTGAGTAAGAGATATTTCAAGTTCTTTTGCACGGCAGCGTATCCTGTGCACCC GCTCACCTTGGTGCACTCATGCACTCACGCGACATGGGACCTTCGATCTCCATCGGACGG ATATAAGATGAGAGAGTCTTCTTTTTACAAAATAACCCTTCGATTCATCTTCTTGTCTCC CGTTCAACCACTTTCCCCAAATCTATCCCCTCTGTGAGGCGTCCATGGCAGCTTTGAATC TCGAAAAATAAAACAATGCTCGACGGAGATGGCCGCTAGAAATTAAGATTAATCAAGATT CCAGCATGCAGCCGTCAAATCCTTGCTCAACGATATGTATGATCTCAACCTCAGGATCTT TGGGTTGATTGCATGATATATATGGCATGCCAAAATTTCGAATCAAACAAGAAATTCCGA TCGGATATGCCTTTGATGCACACATCTGCAACCCCCGGGCAAAGACTCATCCATTCCATC CCATGGGCAAGAACTCTTCTCTCTACAGAGTCAGGTACACTGCGCCGCAGCTGCTCCATC GGCCGAACACCATGGCCGTCGCCCTGGACACGCTCGCCCGCGCATCGTCCCTCTCCAACA AGCTGGACAACCACACGCACCTTGAGGCGTGACATGCCACTGGCCGCGCCGCCGCGCTCT GGATGTGCTATCTCTGTCGCCAAACATGGCTTAATTTGAGCCGCCATTGACGTCGGATAG A



consensusID : consensus_9050#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2098
fasta sequence
                              [CCAGATAGGTAGGCAGGCAGACATGCGTGTCGCCGCGGCGGCGGCGGCGGCGGCCATCCGCCCCACTGCCGCGCTCCTCCTCCTCTTCCCGCCTCACCGCCGCACCACCTCTCTGCGCCGCTCCTCGCTCCCCTTCGCTCGCCCGCGGCGCCACTCTACCACCACCACCACCGCGGAGTCACACCCGAAGCCCAACGAAAGCAACGCCGCCCGCCGCCGCCGCGCCCGCGACTCGCCCGAGGGCCTCCTCAAGGCCAAGCTCGACATGTGCTCCCGCGACAACGACCTCCCCACCGCACTCGCCCTCTACGAAGCCGCCATCTCCCCCGATTCCCTCATCCCGCTCTCCCTCGGTCACTACAACTGCCTCCTCTACCTCTGCGCCAACGCCGCCGCCGCAGACTCCTCGTCCCCCGATGCCGCCCAGCGTGGCTTCGACATCTTCTCCAGGATGGAGGCTGACGGCGTCCAACCCAACGAGGCCACCCTCACCATCCTCGCCCGCCTCGCCGCCGCCCGCCGCGACCCCGCCATGGCCTTCTCCATCGTCCGCCGCATGGCCACCGCCGGCACCGCGCCGCACCTCCGCTCCTACGGCCCCGCCCTCTTCGCCTACTGCGACGCTGGAGACGCCGACGGCGCCACCGAGGTGGAGGCTCACATGGACGCCTCCGGGGTGGTGCCCGAGGAGGCCGAGCTCGCCGCGCTGCTCCGCGTCAACTCTGCCCGTGGGAGACCCGACCAGGTGTACAGGCTCCTGCACAGGGCGCGCGTCCTTCTTCGCCAGGTGGCCGACGCAACCGCCCAGCTACTCGAGTCCTGGTTCGCCTCCCACGCCGCCTCAGAGGCCGGTCTGGACCACTGGGACGCCACCAAGGTGAAGCAAGGCCTGCGCAATGGCGGCGGCGGCTGGCATGGCCAGGGCTGGCTCGGCAAGGGCCAATGGACCGTTGCCCGAACCGACATGGACAAGGATGGCACCTGCCACCGCTGCGGGGAGAAGCTTGTCTGCATTGACATCGATCCATCAGAGACACACAGCTTTGCTGAGTCTGTCGCTCAGATAGCCATCAATCGTGACGCCAATTTCGTCAAGTTTCAGAAATGGCTCGAGTGCCACGGACCATTCGATGCCGTTATTGACGCTGCTAATGCTGGCCTTTACAATCGTAACAGTTTCAGTTTTTATGAGGTGAACCGGGTTGTAAATGGCATACAGAGAATAACTAAATCAAAGAAATTGCCACTGATAATTTTGCATAAGAACCGAGTAAATGGTGGACCTGCAAAACTTCCGCAGAATCAAAAGCTTCTTGAGAGTTGGCAGAGGGCTGGAGCACTATATGCTACACCTCCTGGTTCTAATGATGATTGGTATTGGCTGTACGCTGCTGTTATATACCGGTCATTGCTTGTTACAAATGATGAGATGCGGGACCACTTGTTTCAACTACTTGGCACTAGTTTTTTTCCAAGATGGAAGGAGAACCATCAGGTCAGGTTAACATTCTCGGGCCGTGGTTGGAATTTTCACCTGCCGCCTCCTTATTCAATTGTCATTCAGGAATCTGAAGATGGAAGCTGGCATGTACCAACAACAAATGGTGATGATATTGAGAAACCACGGCAGTGGATTTGTGCTACTAGGAAAATTTCAGGGAAATCGTCTCAAGCACTTGCAAGGGCAGTTGGGTAAGTGCGATGGGTTGCATCTCCATTGACGGGATTGGTGCATGGGAATGGCAGCCAAATTTCGGGCCAGGTATCTGCGCTGCTCCTTTGTTGAATTGGAGGCGGCTTGAAGAGAATCACACCATTATGTAAGGCGGCCGGCAGATGTTGATGGAATTGAGGGCTAGCTGCTGAGCTGACCCAAACGATGGCTGTCAAGTTGTAGGAAGCAAAGTAAAAGATTTCTGTAGCACATGAAAAAGTTTGCCACTCTCTTAAAATGTGGATGTCATGGTTGTTTTAGCTGGCCATTGGTTGTACATGTACATGTATTTTCCTCAAGGTTAAAATCTGAAACAGCGAGGACTAGTCAAACAAGAGGTCGTGTAACTGAAATTATTATTACTAGTAGGAGTAAAGTTGAAAT]

[+] EMBL AK121096             [CCAGATAGGTAGGCAGGCAGACATGCGTGTCGCCGCGGCGGCGGCGGCGGCGGCCATCCGCCCCACTGCCGCGCTCCTCCTCCTCTTCCCGCCTCACCGCCGCACCACCTCTCTGCGCCGCTCCTCGCTCCCCTTCGCTCGCCCGCGGCGCCACTCTACCACCACCACCACCGCGGAGTCACACCCGAAGCCCAACGAAAGCAACGCCGCCCGCCGCCGCCGCGCCCGCGACTCGCCCGAGGGCCTCCTCAAGGCCAAGCTCGACATGTGCTCCCGCGACAACGACCTCCCCACCGCACTCGCCCTCTACGAAGCCGCCATCTCCCCCGATTCCCTCATCCCGCTCTCCCTCGGTCACTACAACTGCCTCCTCTACCTCTGCGCCAACGCCGCCGCCGCAGACTCCTCGTCCCCCGATGCCGCCCAGCGTGGCTTCGACATCTTCTCCAGGATGGAGGCTGACGGCGTCCAACCCAACGAGGCCACCCTCACCATCCTCGCCCGCCTCGCCGCCGCCCGCCGCGACCCCGCCATGGCCTTCTCCATCGTCCGCCGCATGGCCACCGCCGGCACCGCGCCGCACCTCCGCTCCTACGGCCCCGCCCTCTTCGCCTACTGCGACGCTGGAGACGCCGACGGCGCCACCGAGGTGGAGGCTCACATGGACGCCTCCGGGGTGGTGCCCGAGGAGGCCGAGCTCGCCGCGCTGCTCCGCGTCAACTCTGCCCGTGGGAGACCCGACCAGGTGTACAGGCTCCTGCACAGGGCGCGCGTCCTTCTTCGCCAGGTGGCCGACGCAACCGCCCAGCTACTCGAGTCCTGGTTCGCCTCCCACGCCGCCTCAGAGGCCGGTCTGGACCACTGGGACGCCACCAAGGTGAAGCAAGGCCTGCGCAATGGCGGCGGCGGCTGGCATGGCCAGGGCTGGCTCGGCAAGGGCCAATGGACCGTTGCCCGAACCGACATGGACAAGGATGGCACCTGCCACCGCTGCGGGGAGAAGCTTGTCTGCATTGACATCGATCCATCAGAGACACACAGCTTTGCTGAGTCTGTCGCTCAGATAGCCATCAATCGTGACGCCAATTTCGTCAAGTTTCAGAAATGGCTCGAGTGCCACGGACCATTCGATGCCGTTATTGACGCTGCTAATGCTGGCCTTTACAATCGTAACAGTTTCAGTTTTTATGAGGTGAACCGGGTTGTAAATGGCATACAGAGAATAACTAAATCAAAGAAATTGCCACTGATAATTTTGCATAAGAACCGAGTAAATGGTGGACCTGCAAAACTTCCGCAGAATCAAAAGCTTCTTGAGAGTTGGCAGAGGGCTGGAGCACTATATGCTACACCTCCTGGTTCTAATGATGATTGGTATTGGCTGTACGCTGCTGTTATATACCGGTCATTGCTTGTTACAAATGATGAGATGCGGGACCACTTGTTTCAACTACTTGGCACTAGTTTTTTTCCAAGATGGAAGGAGAACCATCAGGTCAGGTTAACATTCTCGGGCCGTGGTTGGAATTTTCACCTGCCGCCTCCTTATTCAATTGTCATTCAGGAATCTGAAGATGGAAGCTGGCATGTACCAACAACAAATGGTGATGATATTGAGAAACCACGGCAGTGGATTTGTGCTACTAGGAAAATTTCAGGGAAATCGTCTCAAGCACTTGCAAGGGCAGTTGGGTAAGTGCGATGGGTTGCATCTCCATTGACGGGATTGGTGCATGGGAATGGCAGCCAAATTTCGGGCCAGGTATCTGCGCTGCTCCTTTGTTGAATTGGAGGCGGCTTGAAGAGAATCACACCATTATGTAAGGCGGCCGGCAGATGTTGATGGAATTGAGGGCTAGCTGCTGAGCTGACCCAAACGATGGCTGTCAAGTTGTAGGAAGCAAAGTAAAAGATTTCTGTAGCACATGAAAAAGTTTGCCACTCTCTTAAAATGTGGATGTCATGGTTGTTTTAGCTGGCCATTGGTTGTACATGTACATGTATTTTCCTCAAGGTTAAAATCTGAAACAGCGAGGACTAGTCAAACAAGAGGTCGTGTAACTGAAATTATTATTACTAGTAGGAGTAAAGTTGAAAT]
[+] EMBL CB639899             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCCGCGACCCCGCCATGGCCTTCTCCATCGTCCGCCGCATGGCCACCGCCGGCACCGCGCCGCACCTCCGCTCCTACGGCCCCGCCCTCTTCGCCTACTGCGACGCTGGAGACGCCGACGGCGCCACCGAGGTGGAGGCTCACATGGACGCCTCCGGGGTGGTGCCCGAGGAGGCCGAGCTCGCCGCGCTGCTCCGCGTCAACTCTGCCCGTGGGAGACCCGACCAGGTGTACAGGCTCCTGCACAGGGCGCGCGTCCTTCTTCGCCAGGTGGCCGACGCAACCGCCCAGCTACTCGAGTCCTGGTTCGCCTCCCACGCCGCCTCAGAGGCCGGTCTGGACCACTGGGACGCCACCAAGGTGAAGCAAGGCCTGCGCAATGGCGGCGGCGGCTGGCATGGCCAGGGCTGGCTCGGCAAGGGCCAATGGACCGTTGCCCGAACCGACATGGACAAGGATGGCACCTGCCACCGCTGCGGGGAGAAGCTTGTCTGCATTGACATCGATCCATCAGAGACACACAGCTNTGCTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]


>consensus_9050#1 CCAGATAGGTAGGCAGGCAGACATGCGTGTCGCCGCGGCGGCGGCGGCGGCGGCCATCCG CCCCACTGCCGCGCTCCTCCTCCTCTTCCCGCCTCACCGCCGCACCACCTCTCTGCGCCG CTCCTCGCTCCCCTTCGCTCGCCCGCGGCGCCACTCTACCACCACCACCACCGCGGAGTC ACACCCGAAGCCCAACGAAAGCAACGCCGCCCGCCGCCGCCGCGCCCGCGACTCGCCCGA GGGCCTCCTCAAGGCCAAGCTCGACATGTGCTCCCGCGACAACGACCTCCCCACCGCACT CGCCCTCTACGAAGCCGCCATCTCCCCCGATTCCCTCATCCCGCTCTCCCTCGGTCACTA CAACTGCCTCCTCTACCTCTGCGCCAACGCCGCCGCCGCAGACTCCTCGTCCCCCGATGC CGCCCAGCGTGGCTTCGACATCTTCTCCAGGATGGAGGCTGACGGCGTCCAACCCAACGA GGCCACCCTCACCATCCTCGCCCGCCTCGCCGCCGCCCGCCGCGACCCCGCCATGGCCTT CTCCATCGTCCGCCGCATGGCCACCGCCGGCACCGCGCCGCACCTCCGCTCCTACGGCCC CGCCCTCTTCGCCTACTGCGACGCTGGAGACGCCGACGGCGCCACCGAGGTGGAGGCTCA CATGGACGCCTCCGGGGTGGTGCCCGAGGAGGCCGAGCTCGCCGCGCTGCTCCGCGTCAA CTCTGCCCGTGGGAGACCCGACCAGGTGTACAGGCTCCTGCACAGGGCGCGCGTCCTTCT TCGCCAGGTGGCCGACGCAACCGCCCAGCTACTCGAGTCCTGGTTCGCCTCCCACGCCGC CTCAGAGGCCGGTCTGGACCACTGGGACGCCACCAAGGTGAAGCAAGGCCTGCGCAATGG CGGCGGCGGCTGGCATGGCCAGGGCTGGCTCGGCAAGGGCCAATGGACCGTTGCCCGAAC CGACATGGACAAGGATGGCACCTGCCACCGCTGCGGGGAGAAGCTTGTCTGCATTGACAT CGATCCATCAGAGACACACAGCTTTGCTGAGTCTGTCGCTCAGATAGCCATCAATCGTGA CGCCAATTTCGTCAAGTTTCAGAAATGGCTCGAGTGCCACGGACCATTCGATGCCGTTAT TGACGCTGCTAATGCTGGCCTTTACAATCGTAACAGTTTCAGTTTTTATGAGGTGAACCG GGTTGTAAATGGCATACAGAGAATAACTAAATCAAAGAAATTGCCACTGATAATTTTGCA TAAGAACCGAGTAAATGGTGGACCTGCAAAACTTCCGCAGAATCAAAAGCTTCTTGAGAG TTGGCAGAGGGCTGGAGCACTATATGCTACACCTCCTGGTTCTAATGATGATTGGTATTG GCTGTACGCTGCTGTTATATACCGGTCATTGCTTGTTACAAATGATGAGATGCGGGACCA CTTGTTTCAACTACTTGGCACTAGTTTTTTTCCAAGATGGAAGGAGAACCATCAGGTCAG GTTAACATTCTCGGGCCGTGGTTGGAATTTTCACCTGCCGCCTCCTTATTCAATTGTCAT TCAGGAATCTGAAGATGGAAGCTGGCATGTACCAACAACAAATGGTGATGATATTGAGAA ACCACGGCAGTGGATTTGTGCTACTAGGAAAATTTCAGGGAAATCGTCTCAAGCACTTGC AAGGGCAGTTGGGTAAGTGCGATGGGTTGCATCTCCATTGACGGGATTGGTGCATGGGAA TGGCAGCCAAATTTCGGGCCAGGTATCTGCGCTGCTCCTTTGTTGAATTGGAGGCGGCTT GAAGAGAATCACACCATTATGTAAGGCGGCCGGCAGATGTTGATGGAATTGAGGGCTAGC TGCTGAGCTGACCCAAACGATGGCTGTCAAGTTGTAGGAAGCAAAGTAAAAGATTTCTGT AGCACATGAAAAAGTTTGCCACTCTCTTAAAATGTGGATGTCATGGTTGTTTTAGCTGGC CATTGGTTGTACATGTACATGTATTTTCCTCAAGGTTAAAATCTGAAACAGCGAGGACTA GTCAAACAAGAGGTCGTGTAACTGAAATTATTATTACTAGTAGGAGTAAAGTTGAAAT



consensusID : consensus_9050#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 130
fasta sequence
                              [CAGAGGACGAGACAAGGGGTCGCGTAACAGAAATTATTATTACTAGTAGGAGTAAAGTTGAAATTGATGGAGAGAATAAAAAAAAAAAAAGAAAAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA766855             [CAGAGGACGAGACAAGGGGTCGCGTAACAGAAATTATTATTACTAGTAGGAGTAAAGTTGAAATTGATGGAGAGAATAAAAAAAAAAA                                          ]
[+] EMBL CA766250             [                           CAGAAATTATTATTACTAGTAGGAGTAAAGTTGAAATTGATGGAGAGAATATAACAAAAAAAAGAAAAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9050#2 CAGAGGACGAGACAAGGGGTCGCGTAACAGAAATTATTATTACTAGTAGGAGTAAAGTTG AAATTGATGGAGAGAATAAAAAAAAAAAAAGAAAAAAAAAAAAANTAAAAAAAAAAAAAA AAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9050#0      CCAGATAGGTAGGCAGGCAGACATGCGTGTCGCCGCGGCGGCGGCGGCGGCGGCCATCCG 60
consensus_9050#1      CCAGATAGGTAGGCAGGCAGACATGCGTGTCGCCGCGGCGGCGGCGGCGGCGGCCATCCG 60
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CCCCACTGCCGCGCTCCTCCTCCTCTTCCCGCCTCACCGCCGCACCACCTCTCTGCGCCG 120
consensus_9050#1      CCCCACTGCCGCGCTCCTCCTCCTCTTCCCGCCTCACCGCCGCACCACCTCTCTGCGCCG 120
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CTCCTCGCTCCCCTTCGCTCGCCCGCGGCGCCACTCTACCACCACCACCACCGCGGAGTC 180
consensus_9050#1      CTCCTCGCTCCCCTTCGCTCGCCCGCGGCGCCACTCTACCACCACCACCACCGCGGAGTC 180
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      ACACCCGAAGCCCAACGAAAGCAACGCCGCCCGCCGCCGCCGCGCCCGCGACTCGCCCGA 240
consensus_9050#1      ACACCCGAAGCCCAACGAAAGCAACGCCGCCCGCCGCCGCCGCGCCCGCGACTCGCCCGA 240
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      GGGCCTCCTCAAGGCCAAGCTCGACATGTGCTCCCGCGACAACGACCTCCCCACCGCACT 300
consensus_9050#1      GGGCCTCCTCAAGGCCAAGCTCGACATGTGCTCCCGCGACAACGACCTCCCCACCGCACT 300
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CGCCCTCTACGAAGCCGCCATCTCCCCCGATTCCCTCATCCCGCTCTCCCTCGGTCACTA 360
consensus_9050#1      CGCCCTCTACGAAGCCGCCATCTCCCCCGATTCCCTCATCCCGCTCTCCCTCGGTCACTA 360
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CAACTGCCTCCTCTACCTCTGCGCCAACGCCGCCGCCGCAGACTCCTCGTCCCCCGATGC 420
consensus_9050#1      CAACTGCCTCCTCTACCTCTGCGCCAACGCCGCCGCCGCAGACTCCTCGTCCCCCGATGC 420
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CGCCCAGCGTGGCTTCGACATCTTCTCCAGGATGGAGGCTGACGGCGTCCAACCCAACGA 480
consensus_9050#1      CGCCCAGCGTGGCTTCGACATCTTCTCCAGGATGGAGGCTGACGGCGTCCAACCCAACGA 480
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      GGCCACCCTCACCATCCTCGCCCGCCTCGCCGCCGCCCGCCGCGACCCCGCCATGGCCTT 540
consensus_9050#1      GGCCACCCTCACCATCCTCGCCCGCCTCGCCGCCGCCCGCCGCGACCCCGCCATGGCCTT 540
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CTCCATCGTCCGCCGCATGGCCACCGCCGGCACCGCGCCGCACCTCCGCTCCTACGGCCC 600
consensus_9050#1      CTCCATCGTCCGCCGCATGGCCACCGCCGGCACCGCGCCGCACCTCCGCTCCTACGGCCC 600
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CGCCCTCTTCGCCTACTGCGACGCTGGAGACGCCGACGGCGCCACGGAGGTGGAGGCTCA 660
consensus_9050#1      CGCCCTCTTCGCCTACTGCGACGCTGGAGACGCCGACGGCGCCACCGAGGTGGAGGCTCA 660
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CATGGACGCCTCCGGGGTGGTGCCCGAGGAGGCCGAGCTCGCCGCGCTGCTCCGCGTCAA 720
consensus_9050#1      CATGGACGCCTCCGGGGTGGTGCCCGAGGAGGCCGAGCTCGCCGCGCTGCTCCGCGTCAA 720
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CACTGCCCGTGGGAGACCCGACCAGGTGTACAGGCTCCTGCACAGGGCGCGCGTCCTTCT 780
consensus_9050#1      CTCTGCCCGTGGGAGACCCGACCAGGTGTACAGGCTCCTGCACAGGGCGCGCGTCCTTCT 780
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      TCGCCAGGTGGCCGACGCAACCGCCCAGCTACTCGAGTCCTGGTTCGCCTCCCACGCCGC 840
consensus_9050#1      TCGCCAGGTGGCCGACGCAACCGCCCAGCTACTCGAGTCCTGGTTCGCCTCCCACGCCGC 840
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CTCAGAGGCCGGTCTGGACCACTGGGACGCCACCAAGGTGAAGCAAGGCCTGCGCAATGG 900
consensus_9050#1      CTCAGAGGCCGGTCTGGACCACTGGGACGCCACCAAGGTGAAGCAAGGCCTGCGCAATGG 900
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CGGCGGCGGCTGGCATGGCCAGGGCTGGCTCGGCAAGGGCCAATGGACCGTTGCCCGAAC 960
consensus_9050#1      CGGCGGCGGCTGGCATGGCCAGGGCTGGCTCGGCAAGGGCCAATGGACCGTTGCCCGAAC 960
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CGACATGGACAAGGATGGCACCTGCCACCGCTGCGGGGAGAAGCTTGTCTGCATTGACAT 1020
consensus_9050#1      CGACATGGACAAGGATGGCACCTGCCACCGCTGCGGGGAGAAGCTTGTCTGCATTGACAT 1020
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CGATCCATCAGAGACACACAGCTTTGCTGAGTCTGTCGCTCAGATAGCCATCAATCGTGA 1080
consensus_9050#1      CGATCCATCAGAGACACACAGCTTTGCTGAGTCTGTCGCTCAGATAGCCATCAATCGTGA 1080
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CGCCAATTTCGTCAAGTTTCAGAAATGGCTCGAGTGCCACGGACCATTCGATGCCGTTAT 1140
consensus_9050#1      CGCCAATTTCGTCAAGTTTCAGAAATGGCTCGAGTGCCACGGACCATTCGATGCCGTTAT 1140
consensus_9050#2      ---------------------------------------CAGAGGA--CGAGACAAGGGG 19
                                                             * **  *  ***  *      

consensus_9050#0      TGACGCTGCTAATGTTGGCCTTTACAATCGTAACAGTTTCAGTTTTTATGAGGTGAACCG 1200
consensus_9050#1      TGACGCTGCTAATGCTGGCCTTTACAATCGTAACAGTTTCAGTTTTTATGAGGTGAACCG 1200
consensus_9050#2      TCGCGTAACAGAAATTATTATTACTAGTAGGAGTAAAGTTGAAATTGATGGAGAGAATAA 79
                      *  **   *  *   *    **   * * * *  *   *     ** ***  * ***   

consensus_9050#0      GGTTGTAAATGGCATACAGAGAATAACTAAATCAAAGAAATTGCCACTGATAATTTTGCA 1260
consensus_9050#1      GGTTGTAAATGGCATACAGAGAATAACTAAATCAAAGAAATTGCCACTGATAATTTTGCA 1260
consensus_9050#2      AAAAAAAAAAAG-AAAAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAAA-------- 130
                            ***  * * * * * ** ** ****  *** ***     *   * *        

consensus_9050#0      TAAGAACCGAGTAAATGGTGGACCTGCAAAACTTCCGCAGAATCAAAAGCTTCTTGAGAG 1320
consensus_9050#1      TAAGAACCGAGTAAATGGTGGACCTGCAAAACTTCCGCAGAATCAAAAGCTTCTTGAGAG 1320
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      TTGGCAGAGGGCTGGAGCACTATATGCTACACCTCCTGGTTCTAATGATGATTGGTATTG 1380
consensus_9050#1      TTGGCAGAGGGCTGGAGCACTATATGCTACACCTCCTGGTTCTAATGATGATTGGTATTG 1380
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      GCTGTACGCTGCTGTTATATACCGGTCATTGCTTGTTACAAATGATGAGATGCGGGACCA 1440
consensus_9050#1      GCTGTACGCTGCTGTTATATACCGGTCATTGCTTGTTACAAATGATGAGATGCGGGACCA 1440
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CTTGTTTCAACTACTTGGCACTAGTTTTTTTCCAAGATGGAAGGAGAACCATCAGGTTTG 1500
consensus_9050#1      CTTGTTTCAACTACTTGGCACTAGTTTTTTTCCAAGATGGAAGGAGAACCATCAGGTCAG 1500
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      TCTCTCATTGCAGAAGTGAACCACACAAATCTGTGTTCTTTTGTAGAATGCTGCACAGTA 1560
consensus_9050#1      GTTAACATTCTCGGG---------------CCGTGGT------TGGAAT-TTTCACC-TG 1537
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CAACCCATTGAGTAAGAGATATTTCAAGTTCTTTTGCACGGCAGCGTATCCTGTGC-ACC 1619
consensus_9050#1      CCGCCTCCTTATTCAATTGTCATTCAGGAATCTGAAGATGGAAGC-TGGCATGTACCAAC 1596
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CGCTCACCTTGGTGCACTCATGCACTCACGCGACATGGGACCTTCGATCTCCATCGGACG 1679
consensus_9050#1      AACAAATGGTGATGATATTGAGAAACCACG--GCAGTGGATTTGTG----CTACTAGGAA 1650
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      GATATAAGATGAGAGAGTCTTCTTTTTACAAAATAACCCTTCGATTCATCTTCTTGTCTC 1739
consensus_9050#1      AATTTCAGG-GAAATCGTCTCAAGCACTTGCAAGGGCAGTTGGGTAAGTGCGATGG---- 1705
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CCGTTCAACCACTTTCCCCAAATCTATCCCCTCTGTGAGGCGTCCATGGCAGCTTTGAAT 1799
consensus_9050#1      --GTTGCATCTCCATTGACGGGATTGGTGCATGGGAATGGCAGCCA----AATTTCGGGC 1759
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CTCGAAAAATAAAACAATGCTCGACGGAGATGGCCGCTAGAAATTAAGATTAATCAAGAT 1859
consensus_9050#1      CA-GGTATCTGCGCTGCTCCTTTGTTGAATTGGAGGCGGCTTGAAGAGAATCA-CACCAT 1817
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      TCCAGCATGCAGCCGTCAAATCCTTGCTCAACGATATGTATGATCTCAACCTCAGGATCT 1919
consensus_9050#1      TATGTAAGGCGGCCGGCAGATGTTGATGGAATTGAGGGCTAGCTGCTGAGCT---GACCC 1874
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      TTGGGTTGATTG-CATGATATATATGGCATGCCAAAA---TTTCGAATCAAACAAGAAAT 1975
consensus_9050#1      AAACGATGGCTGTCAAGTTGTAGGAAGCAAAGTAAAAGATTTCTGTAGCACATGAAAAAG 1934
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      TCCGATCGGATATGCCTTTGATGCACACATCTGCAACCCCCGGGCAAAGACTCATCCATT 2035
consensus_9050#1      TTTGCC---ACTCTCTTAAAATGTGGATGTCATGGTTGTTTTAGCTGG---CCATTGGTT 1988
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CCATCCCATGGGCAAGAACTCTTCTCTCTAC-AGAGTCAGGTACACTGCGCCGCAGCTGC 2094
consensus_9050#1      GTA---CATGTACATGTATTTTCCTCAAGGTTAAAATCTGAAACAGCGAGGACTAGTCAA 2045
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      TCCATCGGCCGAACA-CCATGGCCGTCGCCCTGGACACGCTCGCCCGCGCATCGTCCCTC 2153
consensus_9050#1      ACAAGAGGTCGTGTAACTGAAATTATTATTACTAGTAGGAGTAAAGTTGAAAT------- 2098
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      TCCAACAAGCTGGACAACCACACGCACCTTGAGGCGTGACATGCCACTGGCCGCGCCGCC 2213
consensus_9050#1      ------------------------------------------------------------
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      GCGCTCTGGATGTGCTATCTCTGTCGCCAAACATGGCTTAATTTGAGCCGCCATTGACGT 2273
consensus_9050#1      ------------------------------------------------------------
consensus_9050#2      ------------------------------------------------------------
                                                                                  

consensus_9050#0      CGGATAGA 2281
consensus_9050#1      --------
consensus_9050#2      --------
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)