These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 619 fasta sequence [TCCTTCGCCAATCTCGCCATGAAACCTTGGACCGCCACCGTCTCCCTCCTCCTCGCCGCCGCCGTCGCCATGGCCGCGGCTGTCGCCGCCGGAGAAGGCGGCGCAGCTA-ATTACCTCGTCTTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTGAGCGGGTTCTCGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCTCAGGTGAACCGGGTGCTACCGAGCGCGACATTGTCGCTCATGAGCAGCAACTTCGACGGCATCA-GCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGT-G-TTTT-TAATTTT-AATTTCTC-GTGCTTT-CATGTT--CTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATGGATAATTATAGACGAAAAA] [+] EMBL AK121130 [TCCTTCGCCAATCTCGCCATGAAACCTTGGACCGCCACCGTCTCCCTCCTCCTCGCCGCCGCCGTCGCCATGGCCGCGGCTGTCGCCGCCGGAGAAGGCGGCGCAGCTA ATTACCTCGTCTTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTGAGCGGGTTCTCGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCTCAGGTGAACCGGGTGCTACCGAGCGCGACATTGTCGCTCATGAGCAGCAACTTCGACGGCATCA GCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGT G TTTT TAATTTT AATTTCTC GTGCTTT CATGTT CTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATGGA ] [+] EMBL C72100 [ GCCATGAAACCTTGGACCGCCACCGTNTCCCTCCTCCTCGCCGACGCCGTCGCCATGGCCGCGGCTGTNGCCGTCGGAGAAG GG GCAGCTAGATNACCTCGTNTTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATNCTCGCNGCCGCGCTCGGNAGCNAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTNAGCGGGTTCTCGGCGAGGNTCACTCCGTCGGAGCTGGAGGCGGTTAANAAGCAACCTCAGGTGAACCGGGTGCTACCGA ] [+] EMBL AU163411 [ GACCGCCACCGTCTCCCTCCTCCTCGCCGCCGCCGTCGCCATGGCCGCGGCTGTCG CG CGGAGAA GGCGCA CTA ATTACCTCGTCTTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATCCTCGCCGCCGCGCTCGGCAGCGA GAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTGAGCGGGTTCTCTGCGAGGCTCACTCCGTCGGA CTGGAGGC GTTAAGAAGCAACCTCAGGTGAACCGGGTGCTACCGAGCGCGACATTGTCGTCCATGAGCAGCAACTTCGACGGCATCANCCTGATGAGATCAAAACGAACGATTTCGCTGGGAGNTCCGCTCGGTAG TTTTCAAATTTTAAATTTCTCAGTGCTTTACATGGTNCCTTTTGgcctagc ] [+] EMBL AU164404 [ GACCGCCACCGTCTCCCTCCTCCTCGCCGCCGCCGTCGCCATGGCCGCGGCTGTCGCCGNCGGAGAAGGCGG GCA NTA ATTACCTCGTCTTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTGAGCGGGTTCTCGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCTCAGGTGAACCGGGTGCTACCGAGCGCGACATTGTCGTTCATGAGCAGCAACTTCGACGGCATCA GCTGATGAGATCAAAACGAACGATTTCGNTGGGAGATCCGTTCGGT G TTTT TAA TTT AATTTCTC GTGCTTTna ] [+] EMBL AU093871 [ GAGAAGGCGGCGCAGCTA ATTACCTCGTCTTCGTCGACCCCCCGCCNTCCGGCGTCGTCTGCACCGCCTACCAGNTCTCCATCCTCGCCGCCGCGNTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTGAGCGGGTTCTCGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCTCAGGTGAACCGGGTGCTACCGAGCGCGACATTGTCGCTCATGAGCAGCAACTTCGACGGCATCA GCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGT GTTTTT TAATTTT AATTTCTC GTGCTTT CATGTT CTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATGGATAATTATAGACGAAAAA] consensusID : consensus_9051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [CTTGGAAGTGCCGGTTAAAGAAAGCCAACCTNCAAGGTTGAAACCGGGTGCTTAACCCGGAAGCGACATTGTCGCTCATGGAGCAGNCAACTTCGACGGCATCAGCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGTGTTTTTAATTTTAATTTCTCGTGCTTTCATGTTCTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATGGATAATTATAGACGAAA] [+] EMBL AU163412 [CTTGGAAGTGCCGGTTAAAGAAAGCCAACCTNCAAGGTTGAAACCGGGTGCTTAACCCGGAAGCGACATTGTCGCTCATGGAGCAGNCAACTTCGACGGCATCAGCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGTGTTTTTAATTTTAATTTCTCGTGCTTTCATGTTCTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATGGATAATTATAGACGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9051#0 TCCTTCGCCAATCTCGCCATGAAACCTTGGACCGCCACCGTCTCCCTCCTCCTCGCCGCC 60 consensus_9051#1 ------------------------------------------------------------ consensus_9051#0 GCCGTCGCCATGGCCGCGGCTGTCGCCGCCGGAGAAGGCGGCGCAGCTAATTACCTCGTC 120 consensus_9051#1 ------------------------------------------------------------ consensus_9051#0 TTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATCCTCGCC 180 consensus_9051#1 ------------------------------------------------------------ consensus_9051#0 GCCGCGCTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTC 240 consensus_9051#1 ------------------------------------------------------------ consensus_9051#0 GTGAGCGGGTTCTCGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCT 300 consensus_9051#1 -----------------------------CTTGGAAGTGCCGGTTAAAGAAAGCCAACCT 31 * *** ** ** * * ****** consensus_9051#0 C--AGGT--GAACCGGGTGCTA---CCGAGCGCGACATTGTCGCTCATG-AGCAGC-AAC 351 consensus_9051#1 NCAAGGTTGAAACCGGGTGCTTAACCCGGAAGCGACATTGTCGCTCATGGAGCAGNCAAC 91 **** *********** *** ****************** ***** *** consensus_9051#0 TTCGACGGCATCAGCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGTG 411 consensus_9051#1 TTCGACGGCATCAGCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGTG 151 ************************************************************ consensus_9051#0 TTTTTAATTTTAATTTCTCGTGCTTTCATGTTCTTTTGCTGCGTGTAGGCGTGTGCTTTG 471 consensus_9051#1 TTTTTAATTTTAATTTCTCGTGCTTTCATGTTCTTTTGCTGCGTGTAGGCGTGTGCTTTG 211 ************************************************************ consensus_9051#0 GGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACT 531 consensus_9051#1 GGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACT 271 ************************************************************ consensus_9051#0 GCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTT 591 consensus_9051#1 GCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTT 331 ************************************************************ consensus_9051#0 ATGTGAATGGATAATTATAGACGAAAAA 619 consensus_9051#1 ATGTGAATGGATAATTATAGACGAAA-- 357 ************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||