These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 552 fasta sequence [GCCGGACGCTTGGGGGGTTTTAGGTTTTTGGAGGCTCGGAGCCCATGGAGAACTCCGCCGAGATGCCAGAGATTCATCGAGCAAGAGCAGCCAGAAGGCCAATGGTGAGCCGAGATGGTCGGCCAAGCTCACACAGCGTGTGCTGGGACCAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTC-CGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCCAACGGTTTGAGATGCCAGTAGCATGGCAGCACCCTGAAGTGGACTACTTATATCAAATGCCTCTTTCTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACACAAAGCGCGCTGTTGTCTCCAGTTTTTTGTCATGTGATGCTTTGATCTCTACCCGGCGACGCCCCATTTATATTGCAGGCAATCTCTAGGCATAATGCTTATTACTTCCGCAGTGCATGATATTGATTAATCTTTTATTTGCTTAAAAAAAAAAA] [+] EMBL BI799670 [GCCGGACGCTTGGGGGGTTTTAGGTTTTTGGAGGCTCGGAGCCCATGGAGAACTCCGCCGAGATGCCAGAGATTCATCGAGCAAGAGCAGCCAGAAGGCCAATGGTGAGCCGAGATGGTCGGCCAAGCTCACACAGCGTGTGCTGGGACCAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTC CGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCCAACGGTTTGAGATGCCAGTAGCATGGCAGCACCCTGAAGTGGACTACTTATATCAAATGCCTCTTTCTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACACAAAGCGCGCTGTTGTCTCCAGTTTTTTGTCATGTGATGCTTTGATCTCTACCCGGCGACGCCCCATTTATATTGCAGGCAATCTCTAGGCATAATGCTTATTACTTCCGCAGTGCATGATATTGATTAATCTTTTATTTGCTTAAAAAAAAAAA] [+] EMBL BE228803 [ cgatctcgtGCGAATTCGGCACGAGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCAAACGGTTTGAGATG CAGTAGCATGGCAGCA CCTGAAGTGGACTACTTATATCANATGCCTCTTTCTTTTTTCACTTAACTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACA AAAGCGCGCTGTTGTCTCCAGTTTTTTGTCATGTGATGC ] consensusID : consensus_9083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 504 fasta sequence [AAGACGACGGCGGCGGCGGCGGCTTCGCGATTCCTCCCCTTCTCGTCGGCTCCAAGCAAAAGCGTAGCTAGGGTTTTAGGTTTTTGGAGGCTCGGAGCCATGGAGAACTCCGCCGAGATGCAGAGATTCATCGAGCAAGAGCAGCAGAAGGCAATGGTGAGCGAGATGGTCGGCAAGCTCACAAGCGTGTGCTGGGACAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCAAACGGTTTGAGATGCAGTAGCATGGCAGCACCTGAAGTGGACTACTTATATCAAATGCCTC-TTTTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACAAAAGCGCGCTGTTGTCTCCAGTTTTTTGTCANAAANNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CF329128 [AAGACGACGGCGGCGGCGGCGGCTTCGCGATTCCTCCCCTTCTCGTCGGCTCCAAGCAAAAGCGTAGCTAGGGTTTTAGGTTTTTGGAGGCTCGGAGCCATGGAGAACTCCGCCGAGATGCAGAGATTCATCGAGCAAGAGCAGCAGAAGGCAATGGTGAGCGAGATGGTCGGCAAGCTCACAAGCGTGTGCTGGGACAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCAAACGGTTTGAGATGCAGTAGCATGGCAGCACCTGAAGTGGACTACTTATATCAAATGCCTC TTTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACAAAAGCGCGCTGTTGTCTCC ] [+] EMBL AK121683 [ CGCGATTCCTCCCCTTCTCGTCGGCTCCAAGCAAAAGCGTAGCTAGGGTTTTAGGTTTTTGGAGGCTCGGAGCCATGGAGAACTCCGCCGAGATGCAGAGATTCATCGAGCAAGAGCAGCAGAAGGCAATGGTGAGCGAGGTGGTCGGCAAGCTCACAAGCGTGTGCTGGGACAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCAAACGGTTTGAGATGCAGTAGCATGGCAGCACCTGAAGTGGACTACTTATATCAAATGCCTCTTTTTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATCGTTTTATGTAATTCTGGGACAAAAGCGCGCTGTTGTCTCCA ] [+] EMBL CA756053 [ GTTTTAGTTTTTTGGAGGCTCGGAGCCATGAAGAACTCCGCCGAGATGCAGAGATTCATCGAGCAAGAGCAGCAGAAGGCAATGGTGAGCGAGATGGTCGGCAAGCTCACAAGCGTGTGCTGGGACAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCAAACGGTTTGAGATGCAGTAGCATGGCAGCACCTGAAGTGGACTACTTATATCANATGCCTC TTTTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACAAAAGCGCGCTGTTGTCTCCAGTTTTTTGTCANAAANNNNNNNNNNNNNNNNNNNNNNNNNN] [-] EMBL D42719 [ CCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACAAAAGCGCGCTGTTGTCTCCANNTTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9083#0 ------------------------------------------------------GCCGGA 6 consensus_9083#1 AAGACGACGGCGGCGGCGGCGGCTTCGCGATTCCTCCCCTTCTCGTCGGCTCCAAGCAAA 60 * * consensus_9083#0 CGCTTGG--GGGGTTTTAGGTTTTTGGAGGCTCGGAGCCCATGGAGAACTCCGCCGAGAT 64 consensus_9083#1 AGCGTAGCTAGGGTTTTAGGTTTTTGGAGGCTCGGAGCC-ATGGAGAACTCCGCCGAGAT 119 ** * * ***************************** ******************** consensus_9083#0 GCCAGAGATTCATCGAGCAAGAGCAGCCAGAAGGCCAATGGTGAGCCGAGATGGTCGGCC 124 consensus_9083#1 GC-AGAGATTCATCGAGCAAGAGCAGC-AGAAGGC-AATGGTGAGC-GAGATGGTCGGC- 174 ** ************************ ******* ********** ************ consensus_9083#0 AAGCTCACACAGCGTGTGCTGGGACCAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCA 184 consensus_9083#1 AAGCTCACA-AGCGTGTGCTGGGAC-AAGTGCATCACCAGCACTCCAGGAAGCAAGTTCA 232 ********* *************** ********************************** consensus_9083#0 GCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGA 244 consensus_9083#1 GCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGA 292 ************************************************************ consensus_9083#0 TCATCGCCCAACGGTTTGAGATGCCAGTAGCATGGCAGCACCCTGAAGTGGACTACTTAT 304 consensus_9083#1 TCATCGCCAAACGGTTTGAGATGC-AGTAGCATGGCAGCACC-TGAAGTGGACTACTTAT 350 ******** *************** ***************** ***************** consensus_9083#0 ATCAAATGCCTCTTTCTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATT 364 consensus_9083#1 ATCAAATGCCTCTTTTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATT 410 *************** ******************************************** consensus_9083#0 TAACAGTGAATTGTTTTATGTAATTCTGGGACACAAAGCGCGCTGTTGTCTCCAGTTTTT 424 consensus_9083#1 TAACAGTGAATTGTTTTATGTAATTCTGGGACA-AAAGCGCGCTGTTGTCTCCAGTTTTT 469 ********************************* ************************** consensus_9083#0 TGTCATGTGATGCTTTGATCTCTACCCGGCGACGCCCCATTTATATTGCAGGCAATCTCT 484 consensus_9083#1 TGTCANAAANNNNNNNNNNNNNNNNNNNNNNNNNN------------------------- 504 ***** consensus_9083#0 AGGCATAATGCTTATTACTTCCGCAGTGCATGATATTGATTAATCTTTTATTTGCTTAAA 544 consensus_9083#1 ------------------------------------------------------------ consensus_9083#0 AAAAAAAA 552 consensus_9083#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||