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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9137#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 907 fasta sequence
[GGGGAGCATGGAGGATGGTTCTAAATGGGA-GGTTTTGGTTGCTTGACAGGTGGTGTAACTTTGTTGAGAAGTACCAACGTTACAACATAACAGAGGATGTCTGGCAGCAGCTGCTAGCTTTCAGCAGGTGTGTAAATGAAGATTTGGAAGGTTATGATCCAAAAGGTGCTTGGCCAGTTCTAGTTGATG-ATTTTGTGGAGCATATGCACAGGATTTATAATTCCTGTGATTGCTCCAGTGCGATGGAATCACAATTGAACATTTCCAATACA-T-TTGGAGGAATAAATCCATTACCTGGATCAAAGAGGAAATGCCCTACTCGTCTTAAACCTAATGAGGATGTGGACCTTTCGGATAATTTTACGCGCTCAGTCCATCTTGCGCCTCTGAAACGGCTGAAGGAGAGCCCTGTCATTACTAAGTATGGAGTTTGGGAATACAATGCAGGTACTCCTTTGGTTCACAGTCCATCAGATTATTGTGATGATGCAAATTTGCACAACCCAAGAGGTTGTCTTCAGAACTCACCTTCTATCGTCGAAGATTGTTTGTCAAAAGGATTTGAAGGTTGCATTTCAATGAAATGCTCGTTTTAATATAATCAGGAATACATGGCTTATTCACAATGACAGTCCATAAACTTCATGATTTTCCAGTGTGAGCATTCTGTATCTGTAATTAGTCAATTTTTGACTGGTAATATTATTGGTCTGTACCCTAATGATGCCATTATGTACTTGAGACGAAATATGTGCAACTGACGTCTCTGCTGTAACTGAAGACTGTAACCCTTTCTTGTAGATCATTCCTTCTACCGTTTTATCTTGCCTGATAGGTAATGTTAGAACTTTGTATTGGGCACACTGCAATAAAATATTGGCAAGTGCGAGTGGTAAGAGGAAAATGC]
[+] EMBL CF324157 [GGGNAGCATGGAGGATGGTTCTAAATGGGAGGGTTTTGGTTGCTTGACAGGTGGTGTAACTTTGTTGAGAAGTACCAACGTTACAACATAACAGAGGATGTCTGGCAGCAGCTGCTAGCTTTCAGCAGGTGTGTAAATGAAGATTTGGAAGGTTATGATCCAAAAGGTGCTTGGCCAGTTCTAGTTGATGNATTTTGTGGAGCATATGCACAGGATTTATAATTCCTGTGATTGCTCCAGTGCGATGGAATCACAATTGAACATTTCCAATACA TNTTGGAGGAATAAATCCATTACCTGGATCAAAGAGGAAATGCCCTACTCG ]
[+] EMBL AK066723 [ GGGAGCATGGAGGATGGTTCTAAATGGGA GGTTTTGGTTGCTTGACAGGTGGTGTAACTTTGTTGAGAAGTACCAACGTTACAACATAACAGAGGATGTCTGGCAGCAGCTGCTAGCTTTCAGCAGGTGTGTAAATGAAGATTTGGAAGGTTATGATCCAAAAGGTGCTTGGCCAGTTCTAGTTGATG ATTTTGTGGAGCATATGCACAGGATTTATAATTCCTGTGATTGCTCCAGTGCGATGGAATCACAATTGAACATTTCCAATACA T TTGGAGGAATAAATCCATTACCTGGATCAAAGAGGAAATGCCCTACTCGTCTTAAACCTAATGAGGATGTGGACCTTTCGGATAATTTTACGCGCTCAGTCCATCTTGCGCCTCTGAAACGGCTGAAGGAGAGCCCTGTCATTACTAAGTATGGAGTTTGGGAATACAATGCAGGTACTCCTTTGGTTCACAGTCCATCAGATTATTGTGATGATGCAAATTTGCACAACCCAAGAGGTTGTCTTCAGAACTCACCTTCTATCGTCGAAGATTGTTTGTCAAAAGGATTTGAAGGTTGCATTTCAATGAAATGCTCGTTTTAATATAATCAGGAATACATGGCTTATTCACAATGACAGTCCATAAACTTCATGATTTTCCAGTGTGAGCATTCTGTATCTGTAATTAGTCAATTTTTGACTGGTAATATTATTGGTCTGTACCCTAATGATGCCATTATGTACTTGAGACGAAATATGTGCAACTGACGTCTCTGCTGTAACTGAAGACTGTAACCCTTTCTTGTAGATCATTCCTTCTACCGTTTTATCTTGCCTGATAGGTAATGTTAGAACTTTGTATTGGGCACACTGCAATAAAATATTGGCAAGTGCGAGTGGTAAGAGGAAAATGC]
[+] EMBL CF323283 [ GGGAGCATGGAGGATGGTTCTAAATGGGA GGTTTTGGTTGCTTGACAGGTGGTGTAACTTTGTTGAGAAGTACCAACGTTACAACATAACAGAGGATGTCTGGCAGCAGCTGCTAGCTTTCAGCAGGTGTGTAAATGAAGATTTGGAAGGTTATGATCCAAAAGGTGCTTGGCCAGTTCTAGTTGATG ATTNTGTGGAGCATATGCACAGGATTTATAATTCCTGTGATTGCTCCAGTGCGATGGAATCACAATTGAACATTTCCAATACATT TTGGAGGAATAAATCCATTACCTGGATCAAAGAGGAAATGC ]
consensusID : consensus_9137#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence
[ACGAGCTCGNGCCNAATNCGGCACGAGTGCTCGTNTTAATNNAATCAGGAATACATGGCTTATTCACAATGACAGTCCATAAACTNCATGATTTTCCACTGTGAGCATTCTGTATCNGTGNNTAGTCAATTTTNGACTGGTAATATAAGTAGTCTGTACCCTAATGATGCCATTATGTNCTTGAGACGAAATATGTGCAACTGACGTCTCTGCTGTAACTGAANACGGTNACCCNTNCTNGTAGATCATTCCTTCTACCGTNTTATCTTGCCTGATAGGTNATGTTAGAACTGGTGTATTGGGCACACTGCAATAAAATATTGGCNAGTGCGAGTGGTNNGAGGAAAGTNCANANNTCAATNATCTNGCNNCNATCCTNAAACGGTNCTACTGTCTGAATATTCTAATCCATCATTATATCC]
[+] EMBL AA752045 [ACGAGCTCGNGCCNAATNCGGCACGAGTGCTCGTNTTAATNNAATCAGGAATACATGGCTTATTCACAATGACAGTCCATAAACTNCATGATTTTCCACTGTGAGCATTCTGTATCNGTGNNTAGTCAATTTTNGACTGGTAATATAAGTAGTCTGTACCCTAATGATGCCATTATGTNCTTGAGACGAAATATGTGCAACTGACGTCTCTGCTGTAACTGAANACGGTNACCCNTNCTNGTAGATCATTCCTTCTACCGTNTTATCTTGCCTGATAGGTNATGTTAGAACTGGTGTATTGGGCACACTGCAATAAAATATTGGCNAGTGCGAGTGGTNNGAGGAAAGTNCANANNTCAATNATCTNGCNNCNATCCTNAAACGGTNCTACTGTCTGAATATTCTAATCCATCATTATATCC]
consensusID : consensus_9137#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence
[MSAAGGGATWCATKSAGGKACTCTTTGGTCACAGTCATCAGAWTATTGTGAAGATGCAAATTTGCACCACCCAAGAAGTTGTCCTCAGAACTCACCTTCTATCGTCGAAGATTGTTTGTCHAAARGATTTGAAGGTTGCATTTCAATGAAATGCTCGSTTTTAATATAATCAGGAATACATGGCTTATTCACAATGBACAGATCCATAAACTTCATGTATTTTTCACTATCAATTCCTTCTACCG]
[+] EMBL AA752443 [MSAAGGGATWCATKSAGGKACTCTTTGGTCACAGTCATCAGAWTATTGTGAAGATGCAAATTTGCACCACCCAAGAAGTTGTCCTCAGAACTCACCTTCTATCGTCGAAGATTGTTTGTCHAAARGATTTGAAGGTTGCATTTCAATGAAATGCTCGSTTTTAATATAATCAGGAATACATGGCTTATTCACAATGBACAGATCCATAAACTTCATGTATTTTTCACTATCAATTCCTTCTACCG]
consensusID : consensus_9137#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence
[CGTGCCGAATTCGGCACGAGAACATAACAGAGGATGTCTGGCAGCAGCTGCTAGCTTTCAGCAGGTGTGTAAATGAAGATTTGGAAGGTTATGATCCAAAAGGTGCTTGGCCAGTTCTAGTTGATGATTTTGTGGAGCATATGCACAGGATTTATAATTCCTGTGATTGCTCCAGTGCGATGGAATCACAA]
[+] EMBL BE230438 [CGTGCCGAATTCGGCACGAGAACATAACAGAGGATGTCTGGCAGCAGCTGCTAGCTTTCAGCAGGTGTGTAAATGAAGATTTGGAAGGTTATGATCCAAAAGGTGCTTGGCCAGTTCTAGTTGATGATTTTGTGGAGCATATGCACAGGATTTATAATTCCTGTGATTGCTCCAGTGCGATGGAATCACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9137#0 ------------------------------------------------------------
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 ACGAGCTCGNGCCNAATNCGGCACGAGTGCTCGTNTTAATNNAATCAGGAATACATGGCT 60
consensus_9137#0 ------------------------------------------------------------
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 TATTCACAATGACAGTCCATAAACTNCATGATTTTCCACTGTGAGCATTCTGTATCNGTG 120
consensus_9137#0 ----------GGGGAGCATGGAGGATGGTTCTAAATGGGAGGTTTTGGTTGCTTGACAGG 50
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ----------------------------MSAAGGGATWCATKSAGGKACTCTTTGGTCAC 32
consensus_9137#1 NNTAGTCAATTTTNGACTGGTAATATAAGTAGTCTGTACCCTAATGATGCCATTATGTNC 180
consensus_9137#0 TGGTGTAACTTTGTTGAGAAGTACCAACGTTACAACA-TAACAGAGGATG------TCTG 103
consensus_9137#3 -----------CGTGCCGAATT--CGGCACGAGAACA-TAACAGAGGATG------TCTG 40
consensus_9137#2 AGTCATCAGAWTATTGTGAAGATGCAAATTTGCACCA-CCCAAGAAGTTG------TCCT 85
consensus_9137#1 TTGAGACGAAATATGTGCAACTGACGTCTCTGCTGTAACTGAANACGGTNACCCNTNCTN 240
* ** * * * * * * *
consensus_9137#0 GCAGCAGCTGCTAGCTTTCAGCAGG---TGTGTAAATGAAGATTTGGAAGGTTATGATCC 160
consensus_9137#3 GCAGCAGCTGCTAGCTTTCAGCAGG---TGTGTAAATGAAGATTTGGAAGGTTATGATCC 97
consensus_9137#2 -CAGAACTCACCTTCTATCGTCGAAGATTGTTTGTCHAAARGATTTGAAGGTTGCATTTC 144
consensus_9137#1 GTAGATCATTCCTTCTACCGTNTTATCTTGCCTGATAGGTNATGTTAGAACTGGTGTATT 300
** * ** * ** * * * *
consensus_9137#0 AA-AAGGTGCTTGGCCAGTTCTAGTTGATGATTTTGTGGAGCAT-----ATGCACAGGAT 214
consensus_9137#3 AA-AAGGTGCTTGGCCAGTTCTAGTTGATGATTTTGTGGAGCAT-----ATGCACAGGAT 151
consensus_9137#2 AATGAAATGCTCGSTTTTAATATAATCAGGAATACATGGCTTATTCACAATGBACAG-AT 203
consensus_9137#1 GG----GCACACTGCAATAAAATATTGGCNAGTGCGAGTGGTNNGAGGAAAGTNCANANN 356
* * * * * * * **
consensus_9137#0 TTATAATTCCTGTGATTGCTCCAGTGCGATGGAATCACAATTGAACATTTCCAATACATT 274
consensus_9137#3 TTATAATTCCTGTGATTGCTCCAGTGCGATGGAATCACAA-------------------- 191
consensus_9137#2 CCATAAACTTCATGTATTTTTCACTATCAATTCCTTCTACCG------------------ 245
consensus_9137#1 TCAATNATCTNGCNNCNATCCTNAAACGGTNCTACTGTCTGAATATTCTAATCCATCATT 416
*
consensus_9137#0 TGGAGGAATAAATCCATTACCTGGATCAAAGAGGAAATGCCCTACTCGTCTTAAACCTAA 334
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 ATATCC------------------------------------------------------ 422
consensus_9137#0 TGAGGATGTGGACCTTTCGGATAATTTTACGCGCTCAGTCCATCTTGCGCCTCTGAAACG 394
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 GCTGAAGGAGAGCCCTGTCATTACTAAGTATGGAGTTTGGGAATACAATGCAGGTACTCC 454
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TTTGGTTCACAGTCCATCAGATTATTGTGATGATGCAAATTTGCACAACCCAAGAGGTTG 514
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TCTTCAGAACTCACCTTCTATCGTCGAAGATTGTTTGTCAAAAGGATTTGAAGGTTGCAT 574
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TTCAATGAAATGCTCGTTTTAATATAATCAGGAATACATGGCTTATTCACAATGACAGTC 634
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 CATAAACTTCATGATTTTCCAGTGTGAGCATTCTGTATCTGTAATTAGTCAATTTTTGAC 694
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TGGTAATATTATTGGTCTGTACCCTAATGATGCCATTATGTACTTGAGACGAAATATGTG 754
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 CAACTGACGTCTCTGCTGTAACTGAAGACTGTAACCCTTTCTTGTAGATCATTCCTTCTA 814
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 CCGTTTTATCTTGCCTGATAGGTAATGTTAGAACTTTGTATTGGGCACACTGCAATAAAA 874
consensus_9137#3 ------------------------------------------------------------
consensus_9137#2 ------------------------------------------------------------
consensus_9137#1 ------------------------------------------------------------
consensus_9137#0 TATTGGCAAGTGCGAGTGGTAAGAGGAAAATGC 907
consensus_9137#3 ---------------------------------
consensus_9137#2 ---------------------------------
consensus_9137#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||