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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2319 fasta sequence
[AATGTTTCCCCACCAACCAATCTTCTCCAGTCTTCCTCCCTTCCATTCAAAGCTCCCTCTGTCCACCTGAGGAGGGAGAAATCTTCGTAGACTCCCCCCTAGATCCAGGCTGTTCTGAAGCTGGAGAAGAGATCCCCCATGGATCTAACCTCCATCTGCCCGTTTCTGCAACGGATGGGGATCGAGGTAAGGAGACCGGATCTATCTCAAAATCAATTTCAAATCTGCATTCATCCCAGCATATCCCCAAGCAGATCTCCAAGCAGATTTCAAATCCCCCCGCCGGCCCAATGTCTTCTCGGCCTCTTTACTCCGCCGTACTTCGACAAGATGGACATCCACCAGTAGCTCGGCGCCTACCGATTGCAAATCACCTCAATCCCTCAATTCTTGGCCGCCCACCGCCTCCTCCGTCTTCAAGAGTGTTGAGCAGTGGGAAAGTTGTTGATTTGACGAGACGCCATTACCACCCCCCCTCTTTCCCGAAGCTGTGCTACTTCCAAGACTGAGAAAGAGCAGCCATGGCAAGAAGTTAAGCAAAGGTTCTAGTGGAGGAAAGGATCCTCATTCAATTCTCCTAACAACCAAGAGATCATGGCTGCAAGAAAGATCCGATTCCTCAAGCACACAGAAGGTAAATGCTTCCGCTGCCTCCAACCCGGTCATAAAGTTGCAGACTGCAGGGATCCTCTTCGTTGTTGGTTTTGCAGAAGATTTGGTCACCTCTCCTCAGCCTGCAGAGAACGCCGCTATAAATTGCAACAACAAGTGCAGTTTCATCCGCCATCCTAGCAACCATCTCCACCACCAGCGCCACCACTGCTTTCCTCCACAGTGTTCCCTCCTCTCAACAACCATCTGAACACTTCCTCTGCTCCTCCCACCATGGCCTCGGTCCCAAGTGACTTGGCCTCTCGCCCTGACCTGGGTAGCTGCATGGTGGCGGCGACAAGTGAAATGGAACGTCTGAAGCAGCTCTTCACGGCAAGATCGGTGGTGGCCTGGTCTGATGAAGGCCAGAAGGTGGAGATCGGCACATTTGCTGATGACATCCGTTCGGCCTTCCGTATCCATCGCTCCGACATTCAGATCACGAAGTTCTATCCAGAAGACTTCTTCCTCACTTTTGTTAACCATAGCGATCGTGAGGAAGTGCTGCAAGAGCCAAGGCTGGTAACTCGAAGTGGGAGAGTGTATCACTTCAAGCCATGGAATGAAAGGCGCAATGCTGAAGTAATTGATGTTCGCTTCCATGCCCGAGTCTGCATTGAAGGTATCCCAATGCATGCAAGATCAGAAGAAGTGGCGACAAAGATCATTGGCTGCAAGAGTTCAGTCCACTACATAGAAGAGTACTCCCGTCGCCGGAACTACAACCGTACCTTTGATCTTTGGATTTGGAGCTCAGACTTGAGCAGCTCCATCCTGAAGGCTTCAAGTTTCTCTATCACAAGGCCAGACAGTGAAGCAAGAGCCACTGATGTTCCTTTTCCTGAGTTGGAGCCGCCCCGGATGCCGGGCATTCTTCCGCAGTTGTTTCTCCTCTTCCCCAACCTCTCTCACCTGATCTGTTGCCCGTGTCACAGGATCAGAGGGCTTTGCTCTTGCTTGAAAGACACCTGGATCCTATGTTCTGTGGGGCCACGATGGGAGGTTCCATCTACTCCCCTGATACTTCCCTGCCTCGTACTGCCTCTCCTGTGTTTGTTCTTTCAGCTGCTGCAGACTCACAGGCGACACCAGTTGAGGTGACCCGGCATGATGTGGAGGAGTTCCTGGCGGAGGTGACCACACCCATCCAGCAGCCACTCCTTCCTGCGCCAGGAACCAAGCCACGCCGCCCATGCTGCAACAAGCACTACAAGAAACTGCTCTCCCCAGCAGACATGAAGACAATCACGACACTGGTGGAGAATGGAGGCTGCAAAGGCATTCGGCTGCGTGCCAAGAAGGCGGCATCGGTGGTGCCGATATGAAGCCCCAACCGTGACAGAAGACTGCCGGCCAACTGTTGATGATGTTAAGTAGATGGCTTTTGATGTTTGTAATGCAAATGTGCACCTCTTTGTGTTTCTGCCAAGTTTCTTGGCTGTGTTTCAGAGATGGCCATTTGCATCACAAGTCCTCCCCTGCAGATGGAGTCTCCCCCAGTAGTAATGACTTTTATTCATGTCGCAGTTGAACTGTTTCATCCTCAATTGGAATGTCAGAGGCTTGAACAGCCAAGTTAGAAAAAAAAGTGTTAAGCTGTTGGTAGAGCAGATGAATGCTACAATAGTTTGTCTCCAAGAAACAAAGATGAATCAAATCTCTGATGTG]
[+] EMBL AK102683 [AATGTTTCCCCACCAACCAATCTTCTCCAGTCTTCCTCCCTTCCATTCAAAGCTCCCTCTGTCCACCTGAGGAGGGAGAAATCTTCGTAGACTCCCCCCTAGATCCAGGCTGTTCTGAAGCTGGAGAAGAGATCCCCCATGGATCTAACCTCCATCTGCCCGTTTCTGCAACGGATGGGGATCGAGGTAAGGAGACCGGATCTATCTCAAAATCAATTTCAAATCTGCATTCATCCCAGCATATCCCCAAGCAGATCTCCAAGCAGATTTCAAATCCCCCCGCCGGCCCAATGTCTTCTCGGCCTCTTTACTCCGCCGTACTTCGACAAGATGGACATCCACCAGTAGCTCGGCGCCTACCGATTGCAAATCACCTCAATCCCTCAATTCTTGGCCGCCCACCGCCTCCTCCGTCTTCAAGAGTGTTGAGCAGTGGGAAAGTTGTTGATTTGACGAGACGCCATTACCACCCCCCCTCTTTCCCGAAGCTGTGCTACTTCCAAGACTGAGAAAGAGCAGCCATGGCAAGAAGTTAAGCAAAGGTTCTAGTGGAGGAAAGGATCCTCATTCAATTCTCCTAACAACCAAGAGATCATGGCTGCAAGAAAGATCCGATTCCTCAAGCACACAGAAGGTAAATGCTTCCGCTGCCTCCAACCCGGTCATAAAGTTGCAGACTGCAGGGATCCTCTTCGTTGTTGGTTTTGCAGAAGATTTGGTCACCTCTCCTCAGCCTGCAGAGAACGCCGCTATAAATTGCAACAACAAGTGCAGTTTCATCCGCCATCCTAGCAACCATCTCCACCACCAGCGCCACCACTGCTTTCCTCCACAGTGTTCCCTCCTCTCAACAACCATCTGAACACTTCCTCTGCTCCTCCCACCATGGCCTCGGTCCCAAGTGACTTGGCCTCTCGCCCTGACCTGGGTAGCTGCATGGTGGCGGCGACAAGTGAAATGGAACGTCTGAAGCAGCTCTTCACGGCAAGATCGGTGGTGGCCTGGTCTGATGAAGGCCAGAAGGTGGAGATCGGCACATTTGCTGATGACATCCGTTCGGCCTTCCGTATCCATCGCTCCGACATTCAGATCACGAAGTTCTATCCAGAAGACTTCTTCCTCACTTTTGTTAACCATAGCGATCGTGAGGAAGTGCTGCAAGAGCCAAGGCTGGTAACTCGAAGTGGGAGAGTGTATCACTTCAAGCCATGGAATGAAAGGCGCAATGCTGAAGTAATTGATGTTCGCTTCCATGCCCGAGTCTGCATTGAAGGTATCCCAATGCATGCAAGATCAGAAGAAGTGGCGACAAAGATCATTGGCTGCAAGAGTTCAGTCCACTACATAGAAGAGTACTCCCGTCGCCGGAACTACAACCGTACCTTTGATCTTTGGATTTGGAGCTCAGACTTGAGCAGCTCCATCCTGAAGGCTTCAAGTTTCTCTATCACAAGGCCAGACAGTGAAGCAAGAGCCACTGATGTTCCTTTTCCTGAGTTGGAGCCGCCCCGGATGCCGGGCATTCTTCCGCAGTTGTTTCTCCTCTTCCCCAACCTCTCTCACCTGATCTGTTGCCCGTGTCACAGGATCAGAGGGCTTTGCTCTTGCTTGAAAGACACCTGGATCCTATGTTCTGTGGGGCCACGATGGGAGGTTCCATCTACTCCCCTGATACTTCCCTGCCTCGTACTGCCTCTCCTGTGTTTGTTCTTTCAGCTGCTGCAGACTCACAGGCGACACCAGTTGAGGTGACCCGGCATGATGTGGAGGAGTTCCTGGCGGAGGTGACCACACCCATCCAGCAGCCACTCCTTCCTGCGCCAGGAACCAAGCCACGCCGCCCATGCTGCAACAAGCACTACAAGAAACTGCTCTCCCCAGCAGACATGAAGACAATCACGACACTGGTGGAGAATGGAGGCTGCAAAGGCATTCGGCTGCGTGCCAAGAAGGCGGCATCGGTGGTGCCGATATGAAGCCCCAACCGTGACAGAAGACTGCCGGCCAACTGTTGATGATGTTAAGTAGATGGCTTTTGATGTTTGTAATGCAAATGTGCACCTCTTTGTGTTTCTGCCAAGTTTCTTGGCTGTGTTTCAGAGATGGCCATTTGCATCACAAGTCCTCCCCTGCAGATGGAGTCTCCCCCAGTAGTAATGACTTTTATTCATGTCGCAGTTGAACTGTTTCATCCTCAATTGGAATGTCAGAGGCTTGAACAGCCAAGTTAGAAAAAAAAGTGTTAAGCTGTTGGTAGAGCAGATGAATGCTACAATAGTTTGTCTCCAAGAAACAAAGATGAATCAAATCTCTGATGTG]
[+] EMBL CF323813 [ GACTGCAGGGATCCTCTTCGTTGTTGGTTTTGCAGAAGATTTGGTCACCTCTCCTCAGCCTGCAGAGAACGCCGCTATAAATTGCAACAACAAGTGCAGTTTCATCCGCCATCCTAGCAACCATCTCCACCACCAGCGCCACCACTGCTTTCCTCCACAGTGTTCCCTCCTCTCAACAACCATCTGAACACTTCCTCTGCTCCTCCCACCATGGCCTCGGTCCCAAGTGACTTGGCCTCTCGCCCTGACCTGGGTAGCTGCATGGTGGCGGCGACAAGTGAAATGGAACGTCTGAAGCAGCTCTTCACGGCAAGATCGGTGGTGGCCTGGTCTGATGAAGGCCAGAAGGTGGAGATCGGCACATTTGCTGATGACATCCGTTCGGCCTTCCGTATCCATCGCTCCGACATTCAGATCACGAAGTTCTATCCAGAAGACTTCTTCCTCACTTTTGTTAACCATAGCGATCGTGAGGAAGTGCTGCAAGAGCCAAGGCTGGTAACTCGAAGTGGGAGAGTGTATCACTTCAAGCCATGGAATGAAAGGC ]
consensusID : consensus_9148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1769 fasta sequence
[CATTCGCTACCACGCCCGAGTCTGCATTGAAGGTATCCCGATGCATGCAAGATCAGAAGACATGGCGGCAAAGCTCATAGGCTGCAAAAGCTCAGTGCACTACATAGAAGAATACTCCCGTCGCCGGAACTTCAACCGTACTTTTGATCTTTGGATTTGGAGCTTAGACTTGAGCACCATCCCAAAGGCCACCCAGTTCACAATCACAAGGCCAGATAGAGAAGCAAGGGCTACTGAGATCCCTTTTCCTGACCTGGAGCCATCCCAGCCGGCTCCAACTGATACAAAGAAAGGCCTCACTTATCCGGTCATCATTCACATAGACACTGTCCAGGACCTCTTCTCTCGACAGGGTCGGGTCTTCATGTGGCACTATGGAGTGCCTGATGATGTCACCCGGATGAGGTCGATGGCTCACCCAATTCAAGCCTGCAGAACCCTTCCGGCGCCGGAGAGAAGGTCTGATGATGAAGACGACCACGAGCAGCGTTCAAGAAGGAGGCATAGAAGTCGCTCTCTTTGGAACCGCTTAGGCGGTCGTTCGTCAAGCAAAAGCAGAGAGCCTGGTCTTGACAACCGGAGTTCATACAATCAAGAGACAAGGGGAAGACAGAGAGAACGAGCTGCTGACATCAATAGAAGTAGAAGCCGACATCTGTCCAGGTCGGTCAAACCTGGAGAAACAAGAATCAGGCGTCAATCGGCGACACCTCCGCATCTCTCTGACCCTGCTCCAGCAGACAAGGTTTCCTCCCCCTGCAAACCTTTCAGCCATTCAAGAGATAGCAGCCCTGAAAATGGGCATTGCTCTGCAGTTGCTTCTCCTCCTCTCGAACCTCTCTCACCTGACATATTGCCTGTGTCACAGGAGCAAGGGGCGTTGCTCATGCTTAAAAGGCACCTAGATCCTATGCTGCATGAGGCTATGGTGGGAGGTTCAATTTATTCCCCTGACACTACTCTGCCACGCCCTGCTTCCCCTGTTTTTGTTCTTTCATCTGCTGCAGAACCACAAGAGAACTTAGTGGATGAGGCCCAGCATGATGTGGAGACATTCCTAGCAGAGGTGACCACGCCCATTCAGCAGCCACTGCTGTCTGCGCCAGGAACAAAGCTGCGTCGACCCTGCCGCAATAAGGTGACCACTCCTATTCAAAGGCATAGTGCAAGATTGGCACTGAAAGTCAGACGCAGTACAAAGCTTGAATTAATTGCACAAGAAATTCTTGCAAAGCAATTTGGTGTTCTTGATGATAACAAGCTTTTAAGTGATCAAATTAAGAAACTCTATTTGCAGCATTACAAGAAGCCGCTCTCCCCAGCAGACATGAAGACAATCACGACCCTGGTGGAAAACGGAGGCTGCAAAGGAGTTCGTCTGCGCGCTAAGAAGGCGGCCTCTATGGTGCCGATTTGAAGCAGTTGTCGCGTCAAAAGTTGCCCTACGTGATGATGATGTTAGGCTGCTTAAGTAGAAGAATACTGTCCTTGTTCTCTGTATTGCAAATGCGCACCTCTTCGTGTTTCTGCCAATCTTCCTGGCTGTGTTTCAGAGGTCGTCAGCTGAGCTCCATCCCAACCATCGCATACAAGGCCCCCTCAGCTGTTGTGTCTTTTGTTTATGTCGCAGCTAGACTGTTTCATTCTAAACTGGAATGTTAGAGGCTTGAACAACCAAGCTAGAAAAGGAAGTGTTAAGCTTTTGGTAGAACAAATGAATGCAACAATAGTCTGTCTTCAGGAGACAAAGATGAATGAAATCACTGATG]
[+] EMBL AK105875 [CATTCGCTACCACGCCCGAGTCTGCATTGAAGGTATCCCGATGCATGCAAGATCAGAAGACATGGCGGCAAAGCTCATAGGCTGCAAAAGCTCAGTGCACTACATAGAAGAATACTCCCGTCGCCGGAACTTCAACCGTACTTTTGATCTTTGGATTTGGAGCTTAGACTTGAGCACCATCCCAAAGGCCACCCAGTTCACAATCACAAGGCCAGATAGAGAAGCAAGGGCTACTGAGATCCCTTTTCCTGACCTGGAGCCATCCCAGCCGGCTCCAACTGATACAAAGAAAGGCCTCACTTATCCGGTCATCATTCACATAGACACTGTCCAGGACCTCTTCTCTCGACAGGGTCGGGTCTTCATGTGGCACTATGGAGTGCCTGATGATGTCACCCGGATGAGGTCGATGGCTCACCCAATTCAAGCCTGCAGAACCCTTCCGGCGCCGGAGAGAAGGTCTGATGATGAAGACGACCACGAGCAGCGTTCAAGAAGGAGGCATAGAAGTCGCTCTCTTTGGAACCGCTTAGGCGGTCGTTCGTCAAGCAAAAGCAGAGAGCCTGGTCTTGACAACCGGAGTTCATACAATCAAGAGACAAGGGGAAGACAGAGAGAACGAGCTGCTGACATCAATAGAAGTAGAAGCCGACATCTGTCCAGGTCGGTCAAACCTGGAGAAACAAGAATCAGGCGTCAATCGGCGACACCTCCGCATCTCTCTGACCCTGCTCCAGCAGACAAGGTTTCCTCCCCCTGCAAACCTTTCAGCCATTCAAGAGATAGCAGCCCTGAAAATGGGCATTGCTCTGCAGTTGCTTCTCCTCCTCTCGAACCTCTCTCACCTGACATATTGCCTGTGTCACAGGAGCAAGGGGCGTTGCTCATGCTTAAAAGGCACCTAGATCCTATGCTGCATGAGGCTATGGTGGGAGGTTCAATTTATTCCCCTGACACTACTCTGCCACGCCCTGCTTCCCCTGTTTTTGTTCTTTCATCTGCTGCAGAACCACAAGAGAACTTAGTGGATGAGGCCCAGCATGATGTGGAGACATTCCTAGCAGAGGTGACCACGCCCATTCAGCAGCCACTGCTGTCTGCGCCAGGAACAAAGCTGCGTCGACCCTGCCGCAATAAGGTGACCACTCCTATTCAAAGGCATAGTGCAAGATTGGCACTGAAAGTCAGACGCAGTACAAAGCTTGAATTAATTGCACAAGAAATTCTTGCAAAGCAATTTGGTGTTCTTGATGATAACAAGCTTTTAAGTGATCAAATTAAGAAACTCTATTTGCAGCATTACAAGAAGCCGCTCTCCCCAGCAGACATGAAGACAATCACGACCCTGGTGGAAAACGGAGGCTGCAAAGGAGTTCGTCTGCGCGCTAAGAAGGCGGCCTCTATGGTGCCGATTTGAAGCAGTTGTCGCGTCAAAAGTTGCCCTACGTGATGATGATGTTAGGCTGCTTAAGTAGAAGAATACTGTCCTTGTTCTCTGTATTGCAAATGCGCACCTCTTCGTGTTTCTGCCAATCTTCCTGGCTGTGTTTCAGAGGTCGTCAGCTGAGCTCCATCCCAACCATCGCATACAAGGCCCCCTCAGCTGTTGTGTCTTTTGTTTATGTCGCAGCTAGACTGTTTCATTCTAAACTGGAATGTTAGAGGCTTGAACAACCAAGCTAGAAAAGGAAGTGTTAAGCTTTTGGTAGAACAAATGAATGCAACAATAGTCTGTCTTCAGGAGACAAAGATGAATGAAATCACTGATG]
consensusID : consensus_9148#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 943 fasta sequence
[AACGGGAGTTATACAATCAAGAGACAAGGGGAGGACAGAGAGAACGAGCTGCTGACATCAATAGAAGTAGAAGCCGACATCTGTCCAGGTCGGTCGAACCTGGAGAAACAAGAATCAGGCGTCAATCGGCGACACCTCCGCATCTCTCTGACCCTGCTCCAGCAGACAAGGAGCAAGGGGCGTTGCTCATGCTTAAAAGGCACCTGGATCCTATGCTGCATGAGGCTATGGTGGGAGGTTCAATTTATTCCCCTGACACTACTCTGCCACGCCCTGCTTCCCCTGTTTTTGTTCTTTCATCTGCTGCAGAACCACAAGAGAACTTAGTGGATGAGGCCCAGCATGATGTGGAGACATTCCTAGCGGAGGTGACCACGCCCATTCAGCAGCCACTGCTGTCTGCCTGCGCCAGGAACAAAGCTGCGTCGACCCTGCCGCAATAAGCATTACAAGAAGCCGCTCTCCCCAGCAGACATGAAGACAATCACGACCCTGGTGGAAAACGGAGGCTGCAAAGGAGTTCGTCTGCGCGCTAAGAAGGCGGCCTCTGTGGTGCCGATTTGAAGCAGTTGCCTACGTGATGATGATGTTAGGCTGCTTAAGTAGAAGAATACTATCCTTGGTCTCTGTATTGCAAATGAGCA-CCTCTTCGTGTTTCTGCCAATCTTNCTGGCTGNGTTTCAGAGGTCGTCAGCTGAGC-TCCAT-CCCAGCCATT-GCATAC-AAAG-CCCCCCCAGCTGGTGGG-GCTTCTGGTTATGGCGCAGCTAGACTGTTTCATT-TTAAACT-GGAAT-GTTANAGGC-TTGAACAGCCCAGCTAGAAAAAGGGAGTGNTTAAGCTTTTTTGGTAGAACAAATGAATGGCAACAATTAGTCTTGTCTTTCAGGAGACAAAGATGAATGAAATCCCTGATGTTGATGTTCTCCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB096909 [AACGGGAGTTATACAATCAAGAGACAAGGGGAGGACAGAGAGAACGAGCTGCTGACATCAATAGAAGTAGAAGCCGACATCTGTCCAGGTCGGTCGAACCTGGAGAAACAAGAATCAGGCGTCAATCGGCGACACCTCCGCATCTCTCTGACCCTGCTCCAGCAGACAAGGAGCAAGGGGCGTTGCTCATGCTTAAAAGGCACCTGGATCCTATGCTGCATGAGGCTATGGTGGGAGGTTCAATTTATTCCCCTGACACTACTCTGCCACGCCCTGCTTCCCCTGTTTTTGTTCTTTCATCTGCTGCAGAACCACAAGAGAACTTAGTGGATGAGGCCCAGCATGATGTGGAGACATTCCTAGCGGAGGTGACCACGCCCATTCAGCAGCCACTGCTGTCTGCCTGCGCCAGGAACAAAGCTGCGTCGACCCTGCCGCAATAAGCATTACAAGAAGCCGCTCTCCCCAGCAGACATGAAGACAATCACGACCCTGGTGGAAAACGGAGGCTGCAAAGGAGTTCGTCTGCGCGCTAAGAAGGCGGCCTCTGTGGTGCCGATTTGAAGCAGTTGCCTACGTGATGATGATGTTAGGCTGCTTAAGTAGAAGAATACTATCCTTGGTCTCTGTATTGCAAATGAGCACCCTCTTCGTGTTTCTGNCAATCTTTCTGGCTGNGTTTCAGAGGTCGTCAGCTGAGC TTCAT NCCAGCCATC GNATACNAAGG CCCCCCCAGCTGGTGGG GCTTCTGGTTATGGCGCAGCTAGACTGGTTCATT CTAAACT GGAAT GGTANAGGC TTGAAC ]
[+] EMBL CB096869 [ gacGAGACAAGGGGAAAACAGAGAGAACGAGCTGCTGACATCAATAGAAGTAGAAGCCGACATCTGTCCAGGTCGGTCGAACCTGGAGAAACAAGAATCAGGCGTCAATCGGCGACACCTCCGCATCTCTCTGACCCTGCTCCAGCAGACAAGGAGCAAGGGGCGTTGCTCATGCTTAAAAGGCACCTGGATCCTATGCTGCATGAGGCTATGGTGGGAGGTTCAATTTATTCCCCTGACACTACTCTGCCACGCCCTGCTTCCCCTGTTTTTGTTCTTTCATCTGCTGCAGAACCACAAGAGAACTTAGTGGATGAGGCCCAGCATGATGTGGAGACATTCCTAGCGGAGGTGACCACGCCCATTCAGCAGCCACTGCTGTCTGCCTGCGCCAGGAACAAAGCTGCGTCGACCCTGCCGCAATAAGCATTACAAGAAGCCGCTCTCCCCAGCAGACATGAAGACAATCACGACCCTGGTGGGAAACGGAGGCTGCAAAGGAGTTCGTCTGCGCGCTAAGAAGGCGGCCTCTGTGATGCCGATTTGAAGCAGTTGCCAACGTGATGATGATGTTAGGCTGCTTAAGTAGAAGAATACTATCCTTGNTCTCTGTATTGCAAATGAGCA CCTCTTCGTGTTTCTGCCAATCTTNCTGGCTGNGTTTCAGANGTCGTCAGCTGAGCTTCCATCCCCAGNCATTCGCATAC AAAGNCCCCCCCAGCTGGTGGGNCCTTCTGGTTATGNCGCAGCTAGACTGTTTCATTCTTAAACTGGGAATGGTAANAGGCTTTGAACAGCCCAGCTAGAAAAAGGGAGTGNTTAAGCTTTTTTGGTAGAACAAATGAATGGCAACAATTAGTCTTGTCTTTCA ]
[-] EMBL CA759326 [ TACTTTGCCACGCCCTGCTTCCCCTGTTTTTGTTCTTTCATTTGCTGCAGAACCCCAAGAGAACTTAGTGGATGAGGCCCAGCATGATGTGGAGACATTCCTAGCGGAGGTGACCACGCCCATTCAGCAGCCANTGCTGTCTGCCTGCGCCAGGAACAAAGNTGCGTCGACCCTGCCGCAATAAGCATTACAAGAAGCCGCTCTCCCCAGCAGACATGAAGACAATCCCGACCCTGGTGGAAAACGGAGGCTGCAAAGGAGTTTGTTTGCGCGCTAAGAAGGCGGCCTTTGTGGTGCCGATTTGAAGCAGTTGCCTACGTGATGATGATGTTAGGCTGCTTAAGTAGAAGAATACTATCCTTGTTCTCTGTATTGCAAATGAGCA CCTTTTCGCGTTTTTGCCAATTTTCCTGGCTGTGTTTCAGAGGTCGTCAGTTGAGC TCCAT CCCAGCCATT GCATAC AAAG CCCCCCCAGCTGTTGTG TTTTCTGTTTATGTCGCAGCTAGACTGTTTCATT TTAAACT GGAAT GTTAGAGGC TTGAACAGCCAAGCTAG AAAAGGAAGTG TTAAGC TTTTGGTAGAACAAATGAAT GCAACAA TAGTC TGT TTTCAGGAGACAAAGATGAATGAAATCCCTGATGTTGATGTTCTCCAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9148#1 ------------------------------------------------------------
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 AATGTTTCCCCACCAACCAATCTTCTCCAGTCTTCCTCCCTTCCATTCAAAGCTCCCTCT 60
consensus_9148#1 ------------------------------------------------------------
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 GTCCACCTGAGGAGGGAGAAATCTTCGTAGACTCCCCCCTAGATCCAGGCTGTTCTGAAG 120
consensus_9148#1 ------------------------------------------------------------
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 CTGGAGAAGAGATCCCCCATGGATCTAACCTCCATCTGCCCGTTTCTGCAACGGATGGGG 180
consensus_9148#1 ------------------------------------------------------------
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 ATCGAGGTAAGGAGACCGGATCTATCTCAAAATCAATTTCAAATCTGCATTCATCCCAGC 240
consensus_9148#1 ------------------------------------------------------------
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 ATATCCCCAAGCAGATCTCCAAGCAGATTTCAAATCCCCCCGCCGGCCCAATGTCTTCTC 300
consensus_9148#1 ------------------------------------------------------------
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 GGCCTCTTTACTCCGCCGTACTTCGACAAGATGGACATCCACCAGTAGCTCGGCGCCTAC 360
consensus_9148#1 ------------------------------------------------------------
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 CGATTGCAAATCACCTCAATCCCTCAATTCTTGGCCGCCCACCGCCTCCTCCGTCTTCAA 420
consensus_9148#1 ------------------------------------------------------------
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 GAGTGTTGAGCAGTGGGAAAGTTGTTGATTTGACGAGACGCCATTACCACCCCCCCTCTT 480
consensus_9148#1 ------------------------------------------------------------
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 TCCCGAAGCTGTGCTACTTCCAAGACTGAGAAAGAGCAGCCATGGCAAGAAGTTAAGCAA 540
consensus_9148#1 ------------------------------------------------------------
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 AGGTTCTAGTGGAGGAAAGGATCCTCATTCAATTCTCCTAACAACCAAGAGATCATGGCT 600
consensus_9148#1 ------------------------------------------------------------
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 GCAAGAAAGATCCGATTCCTCAAGCACACAGAAGGTAAATGCTTCCGCTGCCTCCAACCC 660
consensus_9148#1 -----------------------------------------------------CATTCGC 7
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 GGTCATAAAGTTGCAGACTGCAGGGATCCTCTTCGTTGTTGGTTTTGCAGAAGATTTGGT 720
consensus_9148#1 TACCACGCCCGAGTCTGCATTGAAGGTATCC-----------CGATGCATGCAAGATCAG 56
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 CACCTCTCCTCAGCCTGCAGAGAACGCCGCTATAAATTGCAACAACAAGTGCAGTTTCAT 780
consensus_9148#1 AAGACATGGCGGCAAAGCTCATAGGCTGCAAAAGC-TCAGTGCACTACATAGAAGAATAC 115
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 CCGCCATCCTAGCAACCATCTCCACCACCAGCGCCACCACTGCTTTCCTCCACAGTGTTC 840
consensus_9148#1 TCCCGTCGCCGGAACT---TCAACCGTACTTTTGATCTTTGGATTTGGAGCTTAGACTTG 172
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 CCTCCTCTCAACAACCATCTGAACACTTCCTCTGCTCCTCCCACCATGGCCTCGGTCCCA 900
consensus_9148#1 AGCACCAT--CCCAAAGGCC--ACCCAGTTCACAATCACAAGGCCA-GATAGAGAAGCAA 227
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 AGTGACTTGGCCTCTCGCCCTGACCTGGGTAGCTGCATGGTGGCGGCGACAAGTGAAATG 960
consensus_9148#1 GGGCTACTGAGATCCCTTTTCCTGACCTGGAGCCATCCCAGCCGGCTCCAACTGATAC-- 285
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 GAACGTCTGAAGCAGCTCTTCACGGCA-AGATCGGTGGTGGCCTGGTCTGATGAAGGCCA 1019
consensus_9148#1 -AAAGAAAGGCCTCACTTATCCGGTCATCATTCACATAGACACTGTCCAGGACCTCTTCT 344
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 GAAGGTGGAGATCGGCACATTTGCTGATGA--CATCCGTTCGGCCTTCCGTATCCATCGC 1077
consensus_9148#1 CTCGACAGGGTCGGGTCTTCATGTGGCACTATGGAG------TGCCTGATGATGTCACCC 398
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 TCCGACAT--TCAGATCACGAAGTTCTATCCAGAAGACTTCTTCCTCACTTTTGTTAACC 1135
consensus_9148#1 GGATGAGGTCGATGGCTCACCCAATTCAAGCCTGCAGAACCCTTCCGGCGCCGGAGAGAA 458
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 ATA-GCGATCGTGAGGAAGTGCTGCAAGAGCCAAGGCTGGTAACTCGAAGTGGGAGAGTG 1194
consensus_9148#1 GGTCTGATGATGAAGACGACCACGAGCAGCGTTCAAGAAGGAGGC-ATAGAAGTCGCTCT 517
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 TATCACTTCAAGCCATGGAATGAAAGGCGCAATGCTGAAGTAATTGATGTTCGCTTCCAT 1254
consensus_9148#1 CTTTGGAACCGCTTAGGCGGTCGTTCGT--CAAGCAAAAGCAGAGAGCCTGGTCTTGACA 575
consensus_9148#2 -----------------------------------------------------------A 1
consensus_9148#0 GCCCGAGTCTGCATTGAAGGTATCCCAATGCATGCAAGATCAGAAGAAGTGG---CGACA 1311
*
consensus_9148#1 ACCGGAGTTCATACAAT-CAAGAGACAAGGGGAAGACAGAGAGAACGAGCTGCTGACATC 634
consensus_9148#2 ACGGGAGTT-ATACAAT-CAAGAGACAAGGGGAGGACAGAGAGAACGAGCTGCTGACATC 59
consensus_9148#0 A----AGATCATTGGCTGCAAGAGTTCAGTCCACTACATAGAAGAG----TACTCCCGTC 1363
* ** * ** * ****** ** * *** *** * * ** * **
consensus_9148#1 AATAGAAGTAGAAGCCGACATCTGTCCAGGTCGGTCAAACCTGGAGAAACAAGAATCAGG 694
consensus_9148#2 AATAGAAGTAGAAGCCGACATCTGTCCAGGTCGGTCGAACCTGGAGAAACAAGAATCAGG 119
consensus_9148#0 GCCGGAACTACAACCGTACCTTTGATCT------TTGGATTTGGAGC--TCAGACTTGAG 1415
*** ** ** * ** * ** * * * ***** *** * *
consensus_9148#1 CG--TCAATCGGCGACACCTCCGCATCTCTCTGACCCTGCTCCAGCAGACAAGGTTTCCT 752
consensus_9148#2 CG--TCAATCGGCGACACCTCCGCATCTCTCTGACCCTGCTCCAGCAGACAAGG------ 171
consensus_9148#0 CAGCTCCATCC-TGAAGGCTTCAAGTTTCTCTATCACAAGGCCAGACAGTGAAGCAAGAG 1474
* ** *** ** ** * * ***** * * **** * *
consensus_9148#1 CCCCCTGCAAACCTTTCAGCCATTCAAGAGATAGCAGCCCTGAAAATGGGCATTGCTCTG 812
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 CCACTGATGTTCCTTT----TCCTGAGTTGGAGCCGCCCCGGATGCCGGGCATTCTTCCG 1530
consensus_9148#1 CAGTTGCTTCTCCTCCTCTCGAACCTCTCTCACCTGACATATTGCCTGTGTCACAGGAGC 872
consensus_9148#2 ---------------------------------------------------------AGC 174
consensus_9148#0 CAGTTGTTTCTCCTCTTCCCCAACCTCTCTCACCTGATCTGTTGCCCGTGTCACAGGATC 1590
* *
consensus_9148#1 AAGGGGCGTTGCTCATGCTTAAAAGGCACCTAGATCCTATGCTGCATGAGGCTATGGTGG 932
consensus_9148#2 AAGGGGCGTTGCTCATGCTTAAAAGGCACCTGGATCCTATGCTGCATGAGGCTATGGTGG 234
consensus_9148#0 AGAGGGCTTTGCTCTTGCTTGAAAGACACCTGGATCCTATGTTCTGTGGGGCCACGATGG 1650
* **** ****** ***** **** ***** ********* * ** *** * * ***
consensus_9148#1 GAGGTTCAATTTATTCCCCTGACACTACTCTGCCACGCCCTGCTTCCCCTGTTTTTGTTC 992
consensus_9148#2 GAGGTTCAATTTATTCCCCTGACACTACTCTGCCACGCCCTGCTTCCCCTGTTTTTGTTC 294
consensus_9148#0 GAGGTTCCATCTACTCCCCTGATACTTCCCTGCCTCGTACTGCCTCTCCTGTGTTTGTTC 1710
******* ** ** ******** *** * ***** ** **** ** ***** *******
consensus_9148#1 TTTCATCTGCTGCAGAACCACAAGAGAACTTAGTGGATGAGGCCCAGCATGATGTGGAGA 1052
consensus_9148#2 TTTCATCTGCTGCAGAACCACAAGAGAACTTAGTGGATGAGGCCCAGCATGATGTGGAGA 354
consensus_9148#0 TTTCAGCTGCTGCAGACTCACAGGCGACACCAGTTGAGGTGACCCGGCATGATGTGGAGG 1770
***** ********** **** * ** *** ** * * *** *************
consensus_9148#1 CATTCCTAGCAGAGGTGACCACGCCCATTCAGCAGCCACTGCTGTC----TGCGCCAGGA 1108
consensus_9148#2 CATTCCTAGCGGAGGTGACCACGCCCATTCAGCAGCCACTGCTGTCTGCCTGCGCCAGGA 414
consensus_9148#0 AGTTCCTGGCGGAGGTGACCACACCCATCCAGCAGCCACTCCTTCC----TGCGCCAGGA 1826
***** ** *********** ***** *********** ** * **********
consensus_9148#1 ACAAAGCTGCGTCGACCCTGCCGCAATAAGGTGACCACTCCTATTCAAAGGCATAGTGCA 1168
consensus_9148#2 ACAAAGCTGCGTCGACCCTGCCGCAATAAG------------------------------ 444
consensus_9148#0 ACCAAGCCACGCCGCCCATGCTGCAACAAG------------------------------ 1856
** **** ** ** ** *** **** ***
consensus_9148#1 AGATTGGCACTGAAAGTCAGACGCAGTACAAAGCTTGAATTAATTGCACAAGAAATTCTT 1228
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 ------------------------------------------------------------
consensus_9148#1 GCAAAGCAATTTGGTGTTCTTGATGATAACAAGCTTTTAAGTGATCAAATTAAGAAACTC 1288
consensus_9148#2 ------------------------------------------------------------
consensus_9148#0 ------------------------------------------------------------
consensus_9148#1 TATTTGCAGCATTACAAGAAGCCGCTCTCCCCAGCAGACATGAAGACAATCACGACCCTG 1348
consensus_9148#2 ---------CATTACAAGAAGCCGCTCTCCCCAGCAGACATGAAGACAATCACGACCCTG 495
consensus_9148#0 ---------CACTACAAGAAACTGCTCTCCCCAGCAGACATGAAGACAATCACGACACTG 1907
** ******** * ********************************* ***
consensus_9148#1 GTGGAAAACGGAGGCTGCAAAGGAGTTCGTCTGCGCGCTAAGAAGGCGGCCTCTATGGTG 1408
consensus_9148#2 GTGGAAAACGGAGGCTGCAAAGGAGTTCGTCTGCGCGCTAAGAAGGCGGCCTCTGTGGTG 555
consensus_9148#0 GTGGAGAATGGAGGCTGCAAAGGCATTCGGCTGCGTGCCAAGAAGGCGGCATCGGTGGTG 1967
***** ** ************** **** ***** ** *********** ** *****
consensus_9148#1 CCGATTTGAAGCAGTTGTCGCGTCAAAAGTTGCCCTACGTGATGATGATGTTAGGCTGCT 1468
consensus_9148#2 CCGATTTGAAGCAGTTG----------------CCTACGTGATGATGATGTTAGGCTGCT 599
consensus_9148#0 CCGATATGAAGCCCCAACCGTGACAGAAGACTGCCGGCCAACTGTTGATGATG------T 2021
***** ****** ** * ** ***** * *
consensus_9148#1 TAAGTAGAAGAATACTGTCCTTGTTCTCTGTATTGCAAATGCGCACCTCTTCGTGTTTCT 1528
consensus_9148#2 TAAGTAGAAGAATACTATCCTTGGTCTCTGTATTGCAAATGAGCACCTCTTCGTGTTTCT 659
consensus_9148#0 TAAGTAGATG------GCTTTTGATGTTTGTAATGCAAATGTGCACCTCTTTGTGTTTCT 2075
******** * *** * * **** ******** ********* ********
consensus_9148#1 GCCAATCTTCCTGGCTGTGTTTCAGAGGTCGTCAGCTGAGCTCCATCCCAACCATCGCAT 1588
consensus_9148#2 GCCAATCTTNCTGGCTGNGTTTCAGAGGTCGTCAGCTGAGCTCCATCCCAGCCATTGCAT 719
consensus_9148#0 GCCAAGTTTCTTGGCTGTGTTTCAGAGATGGCCATTTGCATCACAAGTCCTCCCCTGCAG 2135
***** ** ****** ********* * * ** ** ** * ** ***
consensus_9148#1 ACAAGGCC-CCCTCAGCTGTTGTGTCTTTTGTTTATGTCGCAGCTAGACTGTTTCATTCT 1647
consensus_9148#2 ACAAAGCC-CCCCCAGCTGGTGGGGCTTCTGGTTATGGCGCAGCTAGACTGTTTCATTTT 778
consensus_9148#0 ATGGAGTCTCCCCCAGTAGTAATGACTTTTATTCATGTCGCAGTTGAACTGTTTCATCCT 2195
* * * *** *** * * *** * * *** ***** * ********** *
consensus_9148#1 AAACTGGAATGTTAGAGGCTTGAACAACCAAGCTAGAAAA-GGAAGTGTT-AAGCTTTT- 1704
consensus_9148#2 AAACTGGAATGTTANAGGCTTGAACAGCCCAGCTAGAAAAAGGGAGTGNTTAAGCTTTTT 838
consensus_9148#0 CAATTGGAATGTCAGAGGCTTGAACAGCCAAGTTAGAAAA-AAAAGTGTT-AAGCTGTT- 2252
** ******** * *********** ** ** ******* **** * ***** **
consensus_9148#1 -GGTAGAACAAATGAATG-CAACAAT-AGTCT-GTCTT-CAGGAGACAAAGATGAATGAA 1759
consensus_9148#2 TGGTAGAACAAATGAATGGCAACAATTAGTCTTGTCTTTCAGGAGACAAAGATGAATGAA 898
consensus_9148#0 -GGTAGAGCAGATGAATG-CTACAAT-AGTTT-GTCTC-CAAGAAACAAAGATGAATCAA 2307
****** ** ******* * ***** *** * **** ** ** ************ **
consensus_9148#1 ATCACTGATG----------------------------------- 1769
consensus_9148#2 ATCCCTGATGTTGATGTTCTCCAAAAAAAAAAAAAAAAAAAAAAA 943
consensus_9148#0 ATCTCTGATGTG--------------------------------- 2319
*** ******
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||