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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 980 fasta sequence
[AGCCGCCGCCGCCGCCGCCGTCACGGCCGCCGTCGACCTGTCCACGGCGGCCGCCGACCTCGGCAGGGTGCACCTCCTCCCCTGCGGCATCAAGCAGAACGGCGCCGCCGCCGTCTCCGACTACTTCAAGCCCAAGGACACAGGTGTGGAGGTGGAGGGGATTAGGGTGGAGGAGGCCTTCTTCCGCGGGAGGAAGCTGCAGGGCGCCACCATCTCGCTCCCGGATGGCTACCGAGGTTATGTATTGGAGAAGAGGAGTGGAGGAAAGGATATGAAGAAGCTGGAGGGGGAGGTTAGCAATTTCAAATCCCGTGCGGAGTTTCAAAACATAACATATTGGAATCATGATACCACACCATCGGCAGAGGATCCCCTACCGCGGTGCTTTCATTTGCTAACCGTTGCTAATGCTATGCACAAGCCAGTGACCGCTGAAGAGATGGCTTACATGTCCGCAATGCAGAATCAGAGCAGTTAACAGAGATTCATGACATGATGAAGCTGCAATTTCACATGATATGACTGCAGCATTTGTAACAAAAAAGCTACTAGCTATTCAGTAGTTTCCATCAGCTGAACCATCCTGACTATCAACCAATCTAGCAAGCAATCTACTATTTCAGTGTCAAGTCCCAACTGAATCAGAGATTAGTAGCTGTGAGAATTTGAATGCCGGATACTCTGCTTCCGGTGACCAGGCTTATGTTACATGCAAGAAAATTCGCATCAAATGTTCTAGTACTGTTTTTGAGTAATTTTAGCTTAGGACTCTGAACCTGCATCGGTTACTCTGTACTAGTATGTCAGTAACCTGTAATGTTTGAACAGTGATCCAGACTGTACGCTCTACTTGACGTGTTGTAATGTTTTGGGGGAAAACACTATCATCCCTTAATATGTTGTTCAAATATTCTAAACAAAAGCTATATTTCATCTGAGTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGA]
[+] EMBL AK102098 [AGCCGCCGCCGCCGCCGCCGTCACGGCCGCCGTCGACCTGTCCACGGCGGCCGCCGACCTCGGCAGGGTGCACCTCCTCCCCTGCGGCATCAAGCAGAACGGCGCCGCCGCCGTCTCCGACTACTTCAAGCCCAAGGACACAGGTGTGGAGGTGGAGGGGATTAGGGTGGAGGAGGCCTTCTTCCGCGGGAGGAAGCTGCAGGGCGCCACCATCTCGCTCCCGGATGGCTACCGAGGTTATGTATTGGAGAAGAGGAGTGGAGGAAAGGATATGAAGAAGCTGGAGGGGGAGGTTAGCAATTTCAAATCCCGTGCGGAGTTTCAAAACATAACATATTGGAATCATGATACCACACCATCGGCAGAGGATCCCCTACCGCGGTGCTTTCATTTGCTAACCGTTGCTAATGCTATGCACACGCCAGTGACCGCTGAAGAGATGGCTTACATGTCCGCAATGCAGAATCAGAGCAGTTAACAGAGATTCATGACATGATGAAGCTGCAATTTCACATGATATGACTGCAGCATTTGTAACAAAAAAGCTACTAGCTATTCAGTAGTTTCCATCAGCTGAACCATCCTGACTATCAACCAATCTAGCAAGCAATCTACTATTTCAGTGTCAAGTCCCAACTGAATCAGAGATTAGTAGCTGTGAGAATTTGAATGCCGGATACTCTGCTTCCGGTGACCAGGCTTATGTTACATGCAAGAAAATTCGCATCAAATGTTCTAGTACTGTTTTTGAGTAATTTTAGCTTAGGACTCTGAACCTGCATCGGTTACTCTGTACTAGTATGTCAGTAACCTGTAATGTTTGAACAGTGATCCAGACTGTACGCTCTACTTGACGTGTTGTAATGTTTTGGGGGAAAACACTATCATCCCTTAATATGTTGTT ]
[+] EMBL BI305733 [ CAGGGTGCACCTCCT CCCTGCGGCATCAAGCAGAACGGCGCCGCCGCCGTCTCCGACTACTTCAAGCCCAAGGACACAGGTGTGGAGGTGGAGGGGATTAGGGTGGAGGAGGCCTTCTTCCGCGGGAGGAAGCTGCAGGGCGCCACCATCTCGCTCCCGGATGGCTACCGAGGTTATGTATTGGAGAAGAGGAGTGGAGGAAAGGATATGAAGAAGCTGGAAGGGGAGGTTAGCAATTTCAAATCCCGTGCGGAGTTTCAAAACATAACATATTGGAATCATGATACCACACCATCGGCAGAGGATCCCCTACCGCGGTGCTTTCATTTGCTAACCGTTGCTAATGCTATGCACAAGCCAGTGACCGCTGAAGAGATGGCTTACATGTCCGCAATGCAGAATCAGAGCAGTTAACAGAGATTCATGACATGATGAAGCTGCAATTTCACATGATATGACTGCAGCATTTGTAACAAAAAAGCTACTAGCTATTCAGTAGTTTCCATCAGCTGAACCATCCTGACTATCAACCAATCTAGCAAGCAATCTACTATTTCAGTGTCAAGTCCCAACTGAAACAGAGATTAGTAGCTGTGAGAATTTGAATGCCGGATACTCTGCTTCCGGTGACCAGGCTTATGTT ]
[+] EMBL BI797190 [ ATGATCCCACACCATC GCAGAGGATCCCCTACC C GTGCTTTCATTTGCTAACCGTTGCTAATGCTATGCACAAGCCAGTGACCGCTGAAGAGATGGCTTACATGTCCGCAATGCAGAATCAGACCAGTTAACAGAGATTCATGACATGATGAA CT CAATTTCACATGATATGACTGCAGCATTTGTAACAAAAAAGCTACTAGCTATTCAGTAGTTTCCATCAGCTGAACCATCCTGACTATCAACCAATCTAGCAAGCAATCTACTATTTCAGTGTCAAGTCCCAACTGAATCAGAGATTAGTAGCTGTGAGAATTTGAATGCCGGATACTCTGCTTCCGGTGACCAGGCTTATGTTACATGCAAGAAAATTCGCATCAAATGTTCTAGTACTGTTTTTGAGTAATTTTAGCTTAGGACTCTGAACCTGCATCGGTTACTCTGTACTAGTATGTCAGTAACCTGTAATGTTTGAACAGTGATCCAGACTGTACGCTCTACTTGACGTGTTGTAATGTTTTGGGGGAAAACACTATCATCCCTTAATATGTTGTTCAAATATTCTAAACAAAA ]
[-] EMBL BE040527 [ GCTAACCGTTGCTAATGCTATGCACAAGCCAGTGACCGCTGAAGAGATGGCTTACATGTCCGCAATGCAGAATCAGAGCAGTTAACAGAGATTCATGACATGATGAAGCTGCAATTTCACATGATATGACTGCAGCATTTGTAACAAAAAAGCTACTAGCTATTCAGTAGTTTCCATCAGCTGAACCATCCTGACTATCAACCAATCTAGCAAGCAATCTACTATTTCAGTGTCAAGTCCCAACTGAATCAGAGATTAGTAGCTGTGAGAATTTGAATGCCGGATACTCTGCTTCCGGTGACCAGGCTTATGTTACATGCAAGAAAATTCGCATCAAATGTTCTAGTACTGTTTTTGAGTAATTTTAGCTTAGGACTCTGAACCTGCATCGGTTACTCTGTACTAGTATGTCAGTAACCTGTAATGTTTGAACAGTGATCCAGACTGTACGCTCTACTTGACGTGTTGTAATGTTTTGGGGGAAAACACTATCATCCCTTAATATGTTGTTCAAATATTCTAAACATATGCTATATTTCATCTGAGTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGA]
consensusID : consensus_9161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[TTTCATTTGCTAACCGTTGCTAATGCTATGCACAAGCCAGTGACCGCTGAAGAGATGGCTTACATGTCCGCAATGCAGAATCAGAGCAGTTAACAGAGATTCATGACATGATGAAGCTGCAATTTCACATGATATGACTGCAGCATTTGTAACAAAAAAGCTACTAGCTATTCAGTAGTTTCCATCAGCTGAACCATCCTGACTATCAACCAATCTAGCAAGCAATCTACTATTTCAGTGTCAAGTCCCAACTGAATCAGAGATTAGTAGCTGTGAGAATTTGAATGCCGGATACTCTGCTTCCGGTGACCAGGCTTATGTTACATGCAAGAAAATTCGCATCAAATGTTCTAGTACTGTTTTTGAGTAATTTTAGCTTAGGACTCTGAACCTGCATCGGTTACTCTGTACTAGTATGTCAGTAACCTGTAATGTTTGAACAGTGATCCAGACTGTACGCTCTACTTGACGTGTTGTAATGTTTTGGGGGGAAAACACTATCATCCCTTAATATGTTGTTCAAATATTCTAAACAAAAAAAAAAAAAAAAAAACTCG]
[+] EMBL CF324834 [TTTCATTTGCTAACCGTTGCTAATGCTATGCACAAGCCAGTGACCGCTGAAGAGATGGCTTACATGTCCGCAATGCAGAATCAGAGCAGTTAACAGAGATTCATGACATGATGAAGCTGCAATTTCACATGATATGACTGCAGCATTTGTAACAAAAAAGCTACTAGCTATTCAGTAGTTTCCATCAGCTGAACCATCCTGACTATCAACCAATCTAGCAAGCAATCTACTATTTCAGTGTCAAGTCCCAACTGAATCAGAGATTAGTAGCTGTGAGAATTTGAATGCCGGATACTCTGCTTCCGGTGACCAGGCTTATGTTACATGCAAGAAAATTCGCATCAAATGTTCTAGTACTGTTTTTGAGTAATTTTAGCTTAGGACTCTGAACCTGCATCGGTTACTCTGTACTAGTATGTCAGTAACCTGTAATGTTTGAACAGTGATCCAGACTGTACGCTCTACTTGACGTGTTGTAATGTTTTGGGGGGAAAACACTATCATCCCTTAATATGTTGTTCAAATATTCTAAACAAAAAAAAAAAAAAAAAAACTCG]
consensusID : consensus_9161#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence
[CAGTGTGCACCTCCTCCCCTGCGGCATAAGCAGAACGGCGCCGCCGCCGTCTCCGACTACTTCAAGCCCAAGGACACAGGTGTGGCAGGTGGCAGGGGCATTAGGGTGGCAGGCAGGCCGTTCTTCCGGCGGGCAGGCAAGCTGCCAGGGCGCCGACCATCGTCGCTCCCTGGCATGGCTACCTGAGGTTATGTCATTGGAGCAAGCAGGCAGTGGCAGGCAAAGGCATCATGAAGCAACGTGGACAGGGGCAGGTTCAGCCAATTTCGAAATCCCTGTGCTGGCAGTTTCCAAAACCATAACCATATTTGGACATCCATGATACCGACACCCATCTGGCCAGCAGGAT]
[+] EMBL CB965402 [CAGTGTGCACCTCCTCCCCTGCGGCATAAGCAGAACGGCGCCGCCGCCGTCTCCGACTACTTCAAGCCCAAGGACACAGGTGTGGCAGGTGGCAGGGGCATTAGGGTGGCAGGCAGGCCGTTCTTCCGGCGGGCAGGCAAGCTGCCAGGGCGCCGACCATCGTCGCTCCCTGGCATGGCTACCTGAGGTTATGTCATTGGAGCAAGCAGGCAGTGGCAGGCAAAGGCATCATGAAGCAACGTGGACAGGGGCAGGTTCAGCCAATTTCGAAATCCCTGTGCTGGCAGTTTCCAAAACCATAACCATATTTGGACATCCATGATACCGACACCCATCTGGCCAGCAGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9161#0 AGCCGCCGCCGCCGCCGCCGTCACGGCCGCCGTCGACCTGTCCACGGCGGCCGCCGACCT 60
consensus_9161#1 ------------------------------------------------------------
consensus_9161#2 ------------------------------------------------------------
consensus_9161#0 CGGCAGGGTGCACCTCCTCCCCTGCGGCATCAAGCAGAACGGCGCCGCCGCCGTCTCCGA 120
consensus_9161#1 ------------------------------------------------------------
consensus_9161#2 ------------------------------------------------------------
consensus_9161#0 CTACTTCAAGCCCAAGGACACAGGTGTGGAGGTGGAGGGGATTAGGGTGGAGGAGGCCTT 180
consensus_9161#1 ------------------------------------------------------------
consensus_9161#2 ------------------------------------------------------------
consensus_9161#0 CTTCCGCGGGAGGAAGCTGCAGGGCGCCACCATCTCGCTCCCGGATGGCTACCGAGGTTA 240
consensus_9161#1 ------------------------------------------------------------
consensus_9161#2 ------------------------------------------------------------
consensus_9161#0 TGTATTGGAGAAGAGGAGTGGAGGAAAGGATATGAAGAAGCTGGAGGGGGAGGTTAGCAA 300
consensus_9161#1 ------------------------------------------------------------
consensus_9161#2 ------------------------------------------------------------
consensus_9161#0 TTTCAAATCCCGTGCGGAGTTTCAAAACATAACATATTGGAATCATGATACCACACCATC 360
consensus_9161#1 ------------------------------------------------------------
consensus_9161#2 ------------------------------------------------------------
consensus_9161#0 GGCAGAGGATCCCCTACCGCGGTGCTTTCATTTGCTAACCGTTGCTAATGCTATGCACAA 420
consensus_9161#1 -------------------------TTTCATTTGCTAACCGTTGCTAATGCTATGCACAA 35
consensus_9161#2 ---------------------------CAGTGTGCACCTCCTCCCCTGCGGCATAAGCAG 33
* *** * * * * ** **
consensus_9161#0 GCCAGTGACCGCTGAAGAGATGGCTTACAT--GTCCGCAATGCAGAATCAGAGCAGTTAA 478
consensus_9161#1 GCCAGTGACCGCTGAAGAGATGGCTTACAT--GTCCGCAATGCAGAATCAGAGCAGTTAA 93
consensus_9161#2 AACGGCG-CCGCCGCCGTCTCCGACTACTTCAAGCCCAAGGACACAGGTGTGGCAGGTGG 92
* * * **** * * * *** * ** * ** * **** *
consensus_9161#0 CAGAG--ATTCATGACATGATGAAGCTGCAATTTCACATGATATGACTGCAGCATTTGTA 536
consensus_9161#1 CAGAG--ATTCATGACATGATGAAGCTGCAATTTCACATGATATGACTGCAGCATTTGTA 151
consensus_9161#2 CAGGGGCATTAGGGTGGCAGGCAGGCCGTTCTTCCGGCGGGCAGGCAAGCTGCCAGGGCG 152
*** * *** * * ** * ** * * * * ** ** *
consensus_9161#0 ACAAAAAA-GCTACTAGCTATTCAGTAGTTTCCATCAGCTGAACCATCCTGACTATCAAC 595
consensus_9161#1 ACAAAAAA-GCTACTAGCTATTCAGTAGTTTCCATCAGCTGAACCATCCTGACTATCAAC 210
consensus_9161#2 CCGACCATCGTCGCTCCCTGGC--ATGGCTACCTGAGGTTATGTCATTGGAGCAAGCAGG 210
* * * * ** ** * * * ** * * *** * * **
consensus_9161#0 CAATCTAGCAAGCAATCTACTATTTCAGTGTCAAGTCCCAACTGAATCAGAGATTAGTAG 655
consensus_9161#1 CAATCTAGCAAGCAATCTACTATTTCAGTGTCAAGTCCCAACTGAATCAGAGATTAGTAG 270
consensus_9161#2 CAG--TGGCAGGCAA--AGGCATCATGAAGCAACGTG--GACAGGGGCAG-GTTCAGCCA 263
** * *** **** ** * * ** ** * *** * * **
consensus_9161#0 CTGTGAGAATTTGAATGCCGGATACTCTGCTTCCGGTGACCAGGCTTATGTTACATGCAA 715
consensus_9161#1 CTGTGAGAATTTGAATGCCGGATACTCTGCTTCCGGTGACCAGGCTTATGTTACATGCAA 330
consensus_9161#2 ATTTCGAAATCCCTGTGCTGGCAGTTTCCAAAACCATAACCATATTTGG---ACATCCAT 320
* * *** *** ** * * * **** ** **** **
consensus_9161#0 GAAAATTCGCATCAAATGTTCTAGTACTGTTTTTGAGTAATTTTAGCTTAGGACTCTGAA 775
consensus_9161#1 GAAAATTCGCATCAAATGTTCTAGTACTGTTTTTGAGTAATTTTAGCTTAGGACTCTGAA 390
consensus_9161#2 GATA-CCGACACCCATCTGGCCAGCAGGAT------------------------------ 349
** * ** * * * ** * *
consensus_9161#0 CCTGCATCGGTTACTCTGTACTAGTATGTCAGTAACCTGTAATGTTTGAACAGTGATCCA 835
consensus_9161#1 CCTGCATCGGTTACTCTGTACTAGTATGTCAGTAACCTGTAATGTTTGAACAGTGATCCA 450
consensus_9161#2 ------------------------------------------------------------
consensus_9161#0 GACTGTACGCTCTACTTGACGTGTTGTAATGTTTTGGGGG-AAAACACTATCATCCCTTA 894
consensus_9161#1 GACTGTACGCTCTACTTGACGTGTTGTAATGTTTTGGGGGGAAAACACTATCATCCCTTA 510
consensus_9161#2 ------------------------------------------------------------
consensus_9161#0 ATATGTTGTTCAAATATTCTAAACAAAAGCTATATTTCATCTGAGTGCTAAAAAAAAAAA 954
consensus_9161#1 ATATGTTGTTCAAATATTCTAAACAAAA---------------------AAAAAAAAAAA 549
consensus_9161#2 ------------------------------------------------------------
consensus_9161#0 AAAAAAAAAAAAAAAAAAACTCGAGA 980
consensus_9161#1 AAAACTCG------------------ 557
consensus_9161#2 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||