These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1281 fasta sequence [CTAATATTTTTTTTACTAGCACTTGCAATATGTGCTGATAAAAAAAATAGAACGTGTCAATCATAGTATTAGCATACTGTACATGGCTGCCTGTCATTTTGACGTAGGTCCAATACAGGAGCATAAAATAGCAAGAAAACAATTAAATTAAGCGTGAAAAAGGAAGGGACGAAGAAAAAGGGGAGGAAGAAGAGCAAAGCGGAGACGACCAACCAAATCCTTGTCCCGTCCGTTCGGTCGCCGCGTCGAGGAGGCAGGGAGCTCGCGGCCTCGCACCACCGCCGCCACCCCGCCATGACGAGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGATCCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGCGGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAGCACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTATCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAGTAGCGAGTCAGATGAAG-AAAGGTCACCCATTGACACCAGTTCCTTAAAAAGATCACGTGGGCTGAGCAAGGCGGCCTTCCTTCGGCTAC-AGATAGAGATTTTTGAGGCAAGCAAAGATGAC-AACAGGGAGGC-ATCACCAGAATGCTCGATTTGCCTTGATGGATTCTATGACGGAGATGAGCTCATAAAGCTACGTTGTGGGCACAGGTTTCACTCGAATTGCCTGGAGCCATGGGTACGGAAATGTGCTGATTGCCCATATTGTCGAACAAACATACAGTCACGATCCTGACTACCTTAGTTCTGCATTGGCAGTTTGGCACTCTCATTAGAACTGTAATTAACAGTAAGATGTATTGTTGTAATTCAGTGTTATGTGCATGCCTGTTACCCGGAGTTGGTATGACATCACTCTATTGAATTTCATTGTTGCCACTGGAGTTGTGCTCCAAAAAAAAAA] [-] EMBL AK111081 [CTAATATTTTTTTTACTAGCACTTGCAATATGTGCTGATAAAAAAAATAGAACGTGTCAATCATAGTATTAGCATACTGTACATGGCTGCCTGTCATTTTGACGTAGGTCCAATACAGGAGCATAAAATAGCAAGAAAACAATTAAATTAAGCGTGAAAAAGGAAGGGACGAAGAAAAAGGGGAGGAAGAAGAGCAAAGCGGAGACGACCAACCAAATCCTTGTCCCGTCCGTTCGGTCGCCGCGTCGAGGAGGCAGGGAGCTCGCGGCCTCGCACCACCGCCGCCACCCCGCCATGACGAGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGATCCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGCGGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAG ] [+] EMBL AK108941 [ TCCGTTCGGTCGCCGCGTCGAGGAGGCAGGGAGCTCGCGGCCTCGCACCACCGCCGCCACCCCGCCATGACGAGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGATCCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGCGGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAGCACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTATCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAGTAGCGAGTCAGATGAAG AAAGGTCACCCATTGACACCAGTTCCTTAAAAAGATCACGTGGGCTGAGCAAGGCGGCCTTCCTTCGGCTAC AGATAGAGATTTTTGAGGCAAGCAAAGATGAC AACAGGGAGGC ATCACCAGAATGCTCGATTTGCCTTGATGGATTCTATGACGGAGATGAGCTCATAAAGCTACGTTGTGGGCACAGGTTTCACTCGAATTGCCTGGAGCCATGGGTACGGAAATGTGCTGATTGCCCATATTGTCGAACAAACATACAGTCACGATCCTGACTACCTTAGTTCTGCATTGGCAGTTTGGCACTCTCATTAGAACTGTAATTAACAGTAAGATGTATTGTTGTAATTCAGTGTTATGTGCATGCCTGTTACCCGGAGTTGGTATGACATCACTCTATTGAATTTCATTGTTGCCACTGGA ] [+] EMBL CF324967 [ TGATGTTCAAAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAGTACCGAGTCAGATGAAG AAAGGTCACCCATTGACA ] [+] EMBL BM420716 [ GCGATTCTGATGAAGAAAAGGTCACCCATTGACACCAGTTCCTTAAAAAGATCACGTGGCCTGACCAA GCGCCCTTCCTTC GCTACAAGATAGAGATTTTTGAGCCAAGCAAAGATGACAAACAGGGAGGCAATCACCAGAATGCTCGATTT CCTTGATGGATTCTATGACGGAGATGAGCTCATAAAGCTACGTTGTGGGCACAGGTTTCACTCGAATTGCCTGGAGCCATGGGTACGGAAATGTGCTGATTGCCCATATTGTCG AC AACATACAGTCACGATCCTGACTACCTTAGTTCTGCATT GCAGTTT GCACTCTCATTAGAACTGTAATTAACAGTAAGATGTATTGTTGTAATTCAGTGTTATGTGCATCCCTGTTACCCGGAGTTGGTATGACATCACTCTATTGAATTTCATTGTTCCCACTGGAGTTGTGCTCCAAAAAAAAAA] consensusID : consensus_9163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCCGCCACCCCGCCATGACGAGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGATCCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGCGGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAGCACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTATCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAG] [+] EMBL CF326738 [CGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCCGCCACCCCGCCATGACGAGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGATCCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGCGGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAGCACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTATCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAG] consensusID : consensus_9163#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [ACGAGACAAGGGGGGATCGTGTCTTATCGTACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCAGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTNCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATT] [+] EMBL CA764080 [ACGAGACAAGGGGGGATCGTGTCTTATCGTACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCAGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTNCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9163#1 ------------------------------------------------------------ consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 CTAATATTTTTTTTACTAGCACTTGCAATATGTGCTGATAAAAAAAATAGAACGTGTCAA 60 consensus_9163#1 ------------------------------------------------------------ consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 TCATAGTATTAGCATACTGTACATGGCTGCCTGTCATTTTGACGTAGGTCCAATACAGGA 120 consensus_9163#1 ----------------------------CGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAG 32 consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 GCATAAAATAGCAAGAAAACAATTAAATTAAGCGTGAAAAAGGAAGGGACGAAGAAAAAG 180 consensus_9163#1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG-------------AGAGAGAGA 79 consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 GGGAGGAAGAAGAGCAAAGCGGAGACGACCAACCAAATCCTTGTCCCGTCCGTTCGGTCG 240 consensus_9163#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG-GCCGCCACCCCGCCATGACG 138 consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 CCGCGTCGAGGAGGCAGGGAGCTCGCGGCCTCGCACCACCGCCGCCACCCCGCCATGACG 300 consensus_9163#1 AGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGAT 198 consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 AGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGAT 360 consensus_9163#1 CCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGC 258 consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 CCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGC 420 consensus_9163#1 GGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAG 318 consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 GGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAG 480 consensus_9163#1 CACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTA 378 consensus_9163#2 ----------------------------------ACGAGACAAGGGGGGATCGTGTCTTA 26 consensus_9163#0 CACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTA 540 ** * ************ consensus_9163#1 TCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGG 438 consensus_9163#2 TCGTACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGG 86 consensus_9163#0 TCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGG 600 ** ********************************************************* consensus_9163#1 CTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTT 498 consensus_9163#2 CTGATGTTCAGAACAAATGAGCAGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTT 146 consensus_9163#0 CTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTT 660 ********************** ************************************* consensus_9163#1 CTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTG 558 consensus_9163#2 CTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTG 206 consensus_9163#0 CTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTG 720 ************************************************************ consensus_9163#1 GATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCA 618 consensus_9163#2 GATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTNCA 266 consensus_9163#0 GATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCA 780 ********************************************************* ** consensus_9163#1 TATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAG------------------- 659 consensus_9163#2 TATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATT----------------------- 303 consensus_9163#0 TATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAGTAGCGAGTCAGATGAAGAA 840 ************************************ consensus_9163#1 ------------------------------------------------------------ consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 AGGTCACCCATTGACACCAGTTCCTTAAAAAGATCACGTGGGCTGAGCAAGGCGGCCTTC 900 consensus_9163#1 ------------------------------------------------------------ consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 CTTCGGCTACAGATAGAGATTTTTGAGGCAAGCAAAGATGACAACAGGGAGGCATCACCA 960 consensus_9163#1 ------------------------------------------------------------ consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 GAATGCTCGATTTGCCTTGATGGATTCTATGACGGAGATGAGCTCATAAAGCTACGTTGT 1020 consensus_9163#1 ------------------------------------------------------------ consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 GGGCACAGGTTTCACTCGAATTGCCTGGAGCCATGGGTACGGAAATGTGCTGATTGCCCA 1080 consensus_9163#1 ------------------------------------------------------------ consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 TATTGTCGAACAAACATACAGTCACGATCCTGACTACCTTAGTTCTGCATTGGCAGTTTG 1140 consensus_9163#1 ------------------------------------------------------------ consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 GCACTCTCATTAGAACTGTAATTAACAGTAAGATGTATTGTTGTAATTCAGTGTTATGTG 1200 consensus_9163#1 ------------------------------------------------------------ consensus_9163#2 ------------------------------------------------------------ consensus_9163#0 CATGCCTGTTACCCGGAGTTGGTATGACATCACTCTATTGAATTTCATTGTTGCCACTGG 1260 consensus_9163#1 --------------------- consensus_9163#2 --------------------- consensus_9163#0 AGTTGTGCTCCAAAAAAAAAA 1281 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||