These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1241 fasta sequence [TACACCCAACCCACCTGGGCCGCCGCGTCTCGTTCTCTCCTCCAACAAACCCACCTCCGAGCAGGCTGCGTGCTCTCGCCGCCGCCGCCACCGTAGGCGAGGGCATCTCATCTCAGGGAGGAATGGCGGAGCGGCAGGTGGCGGAGCTGGGGGCCGGCGCGGCGTGCGTAGGCTGGAACCACTGCGGCCGCCGCCTCGCCGCCGGCGCCGTCGACGGCTTCGTCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAGATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATGGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGGTGAAAGTCAGCAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCTAACATCGGCAGACCATATGAGATCATAGCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTGACTGCAATGTGTCTCACTAGGGTTGCATATCTTTTTTTTCTGGTTGGAACTGGGGCCTTGGGGGATTCCCAGCTCCCAAGTTGTGCAAACAAGCATTTAAGTGGATTGCTTATCAATGTTAAAGAATTCTGCAAGATCTCTTTCAATTATACTGTCGTGCACGT] [+] EMBL AK070122 [TACACCCAACCCACCTGGGCCGCCGCGTCTCGTTCTCTCCTCCAACAAACCCACCTCCGAGCAGGCTGCGTGCTCTCGCCGCCGCCGCCACCGTAGGCGAGGGCATCTCATCTCAGGGAGGAATGGCGGAGCGGCAGGTGGCGGAGCTGGGGGCCGGCGCGGCGTGCGTAGGCTGGAACCACTGCGGCCGCCGCCTCGCCGCCGGCGCCGTCGACGGCTTCGTCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAGATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATGGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGGTGAAAGTCAGCAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCTAACATCGGCAGACCATATGAGATCATAGCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTGACTGCAATGTGTCTCACTAGGGTTGCATATCTTTTTTTTCTGGTTGGAACTGGGGCCTTGGGGGATTCCCAGCTCCCAAGTTGTGCAAACAAGCATTTAAGTGGATTGCTTATCAATGTTAAAGAATTCTGCAAGATCTCTTTCAATTATACTGTCGTGCACGT] [+] EMBL CB654906 [ CCCAACCCACCTGGGCCGCCGCGTCTCGTTCTCTCCTCCAACAAACCCACCTCCGAGCAGGCTGCGTGCTCTCGCCGCCGCCGCCACCGTAGGCGAGGGCATCTCATCTCAGGGAGGAATGGCGGAGCGGCAGGTGGCGGAGCTGGGGGCCGGCGCGGCGTGCGTAGGCTGGAACCACTGCGGCCGCCGCCTCGCCGCCGGCGCCGTCGACGGCTTCGTCTCCGTCTACGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGGCCCACAAGCATGCGATCCTGAATATCGTGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAGATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATGGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGGTGAAAGTCAGCAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTNGTGAGC ] [-] EMBL CF325933 [ ggcacgaaGGGCCGCCGCGTCTCGTTCTCTCCTCCAACAAACCCACCTCCGAGCAGGCTGCGTGCTCTCGCCGCCGCCGCCACCGTAGGCGAGGGCATCTCATCTCAGGGAGGAATGGCGGAGCGGCAGGTGGCGGAGCTGGGGACCGGCGCGGCGTGCGTAGGCTGGAACCA ] [-] EMBL CB654907 [ GTATTGNAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATGGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGGTGAAAGTCAGCAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCTAACATCGGCAGACCATATGAGATCATAGCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTGACTGCAATGTGTCTCACTAGGGTTGCATATCTTTTTTTTCTGGTTGGAACTGGGGCCTTGGGGGATTCCCAGCTCCCAAGTTGTGCAAACAAGCATTTAAGTGGATTGCTTATCGATGTTAAAGAATTCTGCAAGATCTCTTTCAA ] [+] EMBL AU029953 [ CTCCAAATTTCAACTCTTGTAAGATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCTAACATCGGCAGACCATATGAGATCATAGCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAANCTATGGCANGCTAACCTGAATGGAGTTT GCATG ANAA CTGTGCTTa ] consensusID : consensus_9175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [GGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCCTAACATCCGGCAGACCATATGAGATCATAGCCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTGACTGCAATGTGTCTCACTAGGGTTGCATATCTTTTTTTTCTGGTTGGAACTGGGGCCTTGGGGGATTCCCAGCTCCCAAGTTGTGCAAACAAGCATTTAAGTGGATTGCTTATCAATGTTAAAGAAAAAAAAAAAAA] [+] EMBL AU091383 [GGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCCTAACATCCGGCAGACCATATGAGATCATAGCCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTGACTGCAATGTGTCTCACTAGGGTTGCATATCTTTTTTTTCTGGTTGGAACTGGGGCCTTGGGGGATTCCCAGCTCCCAAGTTGTGCAAACAAGCATTTAAGTGGATTGCTTATCAATGTTAAAGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9175#0 TACACCCAACCCACCTGGGCCGCCGCGTCTCGTTCTCTCCTCCAACAAACCCACCTCCGA 60 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 GCAGGCTGCGTGCTCTCGCCGCCGCCGCCACCGTAGGCGAGGGCATCTCATCTCAGGGAG 120 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 GAATGGCGGAGCGGCAGGTGGCGGAGCTGGGGGCCGGCGCGGCGTGCGTAGGCTGGAACC 180 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 ACTGCGGCCGCCGCCTCGCCGCCGGCGCCGTCGACGGCTTCGTCTCCGTCTACGACTCCC 240 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 AGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGGCCCACAAGCATGCGATCCTGAATATCG 300 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 TGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTAT 360 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 CTTTGTGGGAGGAGGTCAGTGAAGATGATCAACTTCCAACCTGGAGGAAATGTAAAGTAT 420 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 TTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAA 480 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 AAATGGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGG 540 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 AATTAGACAAGTGGCAGCTTCAGGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGAT 600 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 CTGGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGGTGAAAGTC 660 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 AGCAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGA 720 consensus_9175#1 ------------------------------------------------------------ consensus_9175#0 TTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTC 780 consensus_9175#1 --------------------------------------------------GGCTCACCTC 10 ********** consensus_9175#0 AGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCC-TAACATC-GGCAGACCATA 838 consensus_9175#1 AGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCCTAACATCCGGCAGACCATA 70 **************************************** ******* *********** consensus_9175#0 TGAGATCATAGC-AGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCG 897 consensus_9175#1 TGAGATCATAGCCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCG 130 ************ *********************************************** consensus_9175#0 CTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGG 957 consensus_9175#1 CTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGG 190 ************************************************************ consensus_9175#0 AGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATG 1017 consensus_9175#1 AGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATG 250 ************************************************************ consensus_9175#0 GCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTG 1077 consensus_9175#1 GCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTG 310 ************************************************************ consensus_9175#0 ACTGCAATGTGTCTCACTAGGGTTGCATATCTTTTTTTTCTGGTTGGAACTGGGGCCTTG 1137 consensus_9175#1 ACTGCAATGTGTCTCACTAGGGTTGCATATCTTTTTTTTCTGGTTGGAACTGGGGCCTTG 370 ************************************************************ consensus_9175#0 GGGGATTCCCAGCTCCCAAGTTGTGCAAACAAGCATTTAAGTGGATTGCTTATCAATGTT 1197 consensus_9175#1 GGGGATTCCCAGCTCCCAAGTTGTGCAAACAAGCATTTAAGTGGATTGCTTATCAATGTT 430 ************************************************************ consensus_9175#0 AAAGAATTCTGCAAGATCTCTTTCAATTATACTGTCGTGCACGT 1241 consensus_9175#1 AAAGAAAAAAAAAAAAA--------------------------- 447 ****** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||