These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1592 fasta sequence [TCGCCTCATGATCAAAAAAAAAAAAAAAAAACAGAAGTTGAACACGCCTCCCCCCTTGGCTCGTCGCCGACGCCTCCACCACCCTCGCGTTTCCCACCCGATTCCACCCCGAAACCCCTCAAATCGAGCGCGAATTCCTCTCCAATAGCTGCGGCTCCAGCCTCCGGTGGATTCTGGTCTCGCCGGATTCGAGCTCTGGTCGGCGGAGAGCACCGGATCCGGAGGTCACGCGGGCAATTGGTGTGCCCCGGAAGAACAAGAACCGGGAGACCATGCAGTACCAACCCCTCGACAGCAGCGGCACTGATGACGACCTTCCTCCGACATACCAACCTAGAGGACCAAGAGTGATTTTCAATGGAAATGGATCACTTCCTCAACCAAACCTACACAGCAACGTGGACAGAGAAATACGTCAGATCGAGCAACAAGCGTACACTGGTGTTCTCAGAGCATTTAAAGTGCAGTCTGATGCTATAACTTGGGAGAAAGAAAGTCTAATAACTGAACTGAGGAAAGAATTGCAAATTTCTGATAAGGAACACCGAGTGCTCTTAAAAGGGGTTACTGAAGAGGAGGCTGTCTGTAGAATAAGGCAATCAAGACAGACAGGTGGAACACAGTCCAGCTCTCACCATAGCAGTGTAGTTCATACTCCGGTACCTGCAAAGAGGCAGAAGAAATCCCATTCAGTCCCTGTGACCCCCCAGGCCCCTGTCATTACTATGCATGCAGTGGTGGGCAAGAAGGGTGGTCGGCAGGCATCTGATCGTGTATTGAAGCGGCTTCCTAGCAATAATAGTCCTATGTTGGGTTCAAGCAGGAGAAGAGGAAGGCTACA-CCCAAATGAACTGATAAAGGGATATTCTCCATTAGATGGGTTTGGCATACCTAATACCGGCAATGTTGTAATGGAGGTTGAGAAGGTATTATCCAATCCAAATATGCTTGAAATTGAGAAGGCAATGAAACTTCTTAGAGATCAGGAGCAATCATTGCTTGATGCAATTGCAAGACTTGACGAAGCATCTGATGGTGAAAATGAAGATATTGTGCTCGTTGCAAGCCAACTAGGTACTACCGTTGCATGACATCGGTGGTCATGGCATCACTTGCTGGTGACGTCTTGAGCTTTAGAACTGCAGGCACTAACTGGATACCCACTTCAGACGGTGGGTGAAGATGGAAACTCATGTGAAGAATGCAAGGTCGGCCAGATATATTGGTCGACATGAATTGTGAATTTGTGGTTGGAATATATATTGTTAGAGATCTCCATATCTTGTATTGTTGCAATGGTATTTTCTTTGCAAATGTAGAGATAACTGCCCTAAAAATAGAGCGTAGATGAAA-CCCCCTTTCTCCTTCAGAAATGGGGACATAAATTAGTAGGTTGTAAATTATTTGCTTCTGTGCCATCCGTGCCTGCAAAGAAATTGCGGCACTGTACAGTATGCAGCGCGCTATCCTGTATCAAGAAAATTATTTTATGAATCCTGTGACTAATATGAATCTGT-GT-AAAAAGGTTTGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK070907 [TCGCCTCATGATCAAAAAAAAAAAAAAAAAACAGAAGTTGAACACGCCTCCCCCCTTGGCTCGTCGCCGACGCCTCCACCACCCTCGCGTTTCCCACCCGATTCCACCCCGAAACCCCTCAAATCGAGCGCGAATTCCTGTCCAATAGCTGCGGCTCCAGCCTCCGGTGGATTCTGGTCTCGCCGTATTCGAGCTCTGGTCGGCGGAGAGCACCGGATCCGGAGGTCACGCGGGCAATTGGTGTGCCCCGGAAGAACAAGAACCGGGAGACCATGCAGTACCAACCACTCGACAGCAGCGGCACTGATGACGACCTTCCTCCGACATACCAACCTAGAGGACCAAGAGTGATTTTCAATGGAAATGGATCACTTCCTCAACCAAACCTACACAGCAACGTGGACAGAGAAATACGTCAGATCGAGCAACAAGCGTACACTGGTGTTCTCAGAGCATTTAAAGTGCAGTCTGATGCTATAACTTGGGAGAAAGAAAGTCTAATAACTGAACTGAGGAAAGAATTGCAAATTTCTGATAAGGAACACCGAGTGCTCTTAAAAGGGGTTACTGAAGAGGAGGCTGTCTGTAGAATAAGGCAATCAAGACAGACAGGTGGAACACAGTCCAGCTCTCACCATAGCAGTGTAGTTCATACTCCGGTACCTGCAAAGAGGCAGAAGAAATCCCATTCAGTCCCTGTGACCCCCCAGGCCCCTGTCATTACTATGCATGCAGTGGTGGGCAAGAAGGGTGGTCGGCAGGCATCTGATCGTGTATTGAAGCGGCTTCCTAGCAATAATAGTCCTATGTTGGGTTCAAGCAGGAGAAGAGGAAGGCTACA CCCAAATGAACTGATAAAGGGATATTCTCCATTAGATGGGTTTGGCATACCTAATACCGGCAATGTTGTAATGGAGGTTGAGAAGGTATTATCCAATCCAAATATGCTTGAAATTGAGAAGGCAATGAAACTTCTTAGAGATCAGGAGCAATCATTGCTTGATGCAATTGCAAGACTTGACGAAGCATCTGATGGTGAAAATGAAGATATTGTGCTCGTTGCAAGCCAACTAGGTACTACCGTTGCATGACATCGGTGGTCATGGCATCACTTGCTGGTGACGTCTTGAGCTTTAGAACTGCAGGCACTAACTGGATACCCACTTCAGACGGTGGGTGAAGATGGAAACTCATGTGAAGAATGCAAGGTCGGCCAGATATATTGGTCGACATGAATTGTGAATTTGTGGTTGGAATATATATTGTTAGAGATCTCCATATCTTGTATTGTTGCAATGGTATTTTCTTTGCAAATGTAGAGATAACTGCCCTAAAAATAGAGCGTAGATGAAA CCCCCTTTCTCCTTCAGAAATGGGGACATAAATTAGTAGGTTGTAAATTATTTGCTTCTGTGCCATCCGTGCCTGCAAAGAAATTGCGGCACTGTACAGTATGCAGCGCGCTATCCTGTATCAAGAAAATTATTTTATGAATCCTGTGACTAATATGAATCTGT GT AAAAA ] [+] EMBL AK100370 [ CCCCTTGGCTCGTCGCCGACGCCTCCACCACCCTCGCGTTTCCCACCCGATTCCACCCCGAAACCCCTCAAATCGAGCGCGAATTCCTCTCCAATAGCTGCGGCTCCAGCCTCCGGTGGATTCTGGTCTCGCCGGATTCGAGCTCTGGTCGGCGGAGAGCACCGGATCCGGAGGTCACGCGGGCAATTGGTGTGCCCCGGAAGAACAAGAACCGGGAGACCATGCAGTACCAACCCCTCGACAGCAGCGGCACTGATGACGACCTTCCTCCGACATACCAACCTAGAGGACCAAGAGTGATTTTCAATGGAAATGGATCACTTCCTCAACCAAACCTACACAGCAACGTGGACAGAGAAATACGTCAGATCGAGCAACAAGCGTACACTGGTGTTCTCAGAGCATTTAAAGTGCAGTCTGATGCTATAACTTGGGAGAAAGAAAGTCTAATAACTGAACTGAGGAAAGAATTGCAAATTTCTGATAAGGAACACCGAGTGCTCTTAAAAGGGGTTACTGAAGAGGAGGCTGTCTGTAGAATAAGGCAATCAAGACAGACAGGTGGAACACAGTCCAGCTCTCACCATAGCAGTGTAGTTCATACTCCGGTACCTGCAAAGAGGCAGAAGAAATCCCATTCAGTCCCTGTGACCCCCCAGGCCCCTGTCATTACTATGCATGCAGTGGTGGGCAAGAAGGGTGGTCGGCAGGCATCTGATCGTGTATTGAAGCGGCTTCCTAGCAATAATAGTCCTATGTTGGGTTCAAGCAGGAGAAGAGGAAGGCTACA CCCAAATGAACTGATAAAGGGATATTCTCCATTAGATGGGTTTGGCATACCTAATACCGGCAATGTTGTAATGGAGGTTGAGAAGGTATTATCCAATCCAAATATGCTTGAAATTGAGAAGGCAATGAAACTTCTTAGAGATCAGGAGCAATCATTGCTTGATGCAATTGCAAGACTTGACGAAGCATCTGATGGTGAAAATGAAGATATTGTGCTCGTTGCAAGCCAACTAGGTACTACCGTTGCATGACATCGGTGGTCATGGCATCACTTGCTGGTGACGTCTTGAGCTTTAGAACTGCAGGCACTAACTGGATACCCACTTCAGACGGTGGGTGAAGATGGAAACTCATGTGAAGAATGCAAGGTCGGCCAGATATATTGGTCGACATGAATTGTGAATTTGTGGTTGGAATATATATTGTTAGAGATCTCCATATCTTGTATTGTTGCAATGGTATTTTCTTTGCAAATGTAGAGATAACTGCCCTAAAAATAGAGCGTAGATGAAA CCCCCTTTCTCCTTCAGAAATGGGGACATAAATTAGTAGGTTGTAAATTATTTGCTTCTGTGCCATCCGTGCCTGCAAAGAAATTGCGGCACTGTACAGTATGCAGCGCGCTATCCTGTATCAAGAAAATTATTTTATGAATCCTGTGACTAATATGAATCTGT GT AAAAAGGTTT ] [+] EMBL CB645192 [ ACCCCGAAACCCCTCAAATCGAGCGCGAATTCCTCTCCAATAGCTGCGGCTCCAGCCTCCGGTGGATTCTGGTCTCGCCGGATTCGAGCTCTGGTCGGCGGAGAGCACCGGATCCGGAGGTCACGCGGGCAATTGGTGTGCCCCGGAAGAACAAGAACCGGGAGACCATGCAGTACCAACCCCTCGACAGCAGCGGCACTGATGACGACCTTCCTCCGACATACCAACCTAGAGGACCAAGAGTGATTTTCAATGGAAATGGATCACTTCCTCAACCAAACCTACACAGCAACGTGGACAGAGAAATACGTCAGATCGAGCAACAAGCGTACACTGGTGTTCTCAGAGCATTTAAAGTGCAGTCTGATGCTATAACTTGGGAGAAAGAAAGTCTAATAACTGAACTGAGGAAAGAATTGCAAATTTCTGATAAGGAACACCGAGTGCTCTTAAAAGGGGTTACTGAAGAGGAGGCTGTCTGTAGAATAAGGCAATCAAGACAGACAGGTGGAACACAGTCCAGCTCTCACCATAGCAGTGTAGTTCATACTCCGGTACCTGCAAAGAGGCAGAAGAAATCCCATTCAGTCCCTGTGACCCCCCAGGCCCCTGTCATTACTATGCATGCAGTGGTGGGCAAGAAGGGTGGTCGGCAGGCATCTGATCGTGTATTGAAGCGGCTTCCTAGCAATAATAGTCCTATGTTGGGTTCAAGCAGGAGAAGAGGAAGGCTACACCCCAAATGAACTGATAAAGGGATATTCTCCATTAGATGGGTTTGGCA ] [+] EMBL CA766036 [ AGACAAGGGGAACACAGTCCAGCTCTCACCATAGCAGTGTAGTTCATACTCCGGTACCTGCAAAGAGGCAGAAGAAATCCCATTCAGTCCCTGTGACCCCCCAGGCCCCTGTCATTACTATGCATGCAGTGGTGGGCAAGAAGGGTGGTCGGCAGGCATCTGATCGTGTATTGAAGCGGCTTCCTAGCAATAATAGTCCTATGTTGGGTTCAAGCAGGAGAAGAGGAAGGCTACA CCCAAATGAACTGATAAAGAGATATTCTCCATTAGATGGGTTTGGCATACCTAATACCGGCAATGTTGTAATGGAGGTTGAGAAGGTATTATCCAATCCAAATATGCTTGAAATTGAGAAGGCAATGAAACTTCTTAGAGATCAGGAGCAATCATTGCTTGATGCAATTGCAAGACTTGACGAAGCATCTGATGGTGAAAATGAAGATATTGTGCTCGTTGCAAGCCAACTAGGTACTACCGTTGCATGACATCGGTGGTCATGGCATCACTTGCTGGTGACGTCTTGAGCTTTAGAACTGCAGGCACTAACTGGATACCCACTTCAGACGGTGGGTGAAGATGGAAACTCATGTGAAGAATGCAAGGTCAGCCAGATATATTGGTCGACATGAATTGTGAATTTGTGGTTGGAATATATATTGGTAGAGATCTCCATATCTTGNATTGGTGCAATGGTATTTTCTTTGCAAATGTAGAGATAACTGCCCTAAAAATAGAGCGTAGATGAAACCCCCCTTTCTNCTTCAGAAATGGGGACATAAATTAGTAGGNTGNAAAATATTTGCTTCTGNGCCATCCGNGCCTGCAAAGAAAATGCGGCACTGTCCAGTATGCAGCGCGCTATCCTGGATCAA NAAATTATT ] [+] EMBL BM421602 [ ccgATCGGTGGTCATGGCATCACTTGCTGGTGACGTCTTGAGCTTTAGAACTGCAGGCACTAACTGGATACCCACTTCAGACGGTGGGTGAAGATGGAAACTCATGTGAAGAATGCAAGGTCGGCCAGATATATTGGTCGACATGAATTGTGAATTTGTGGTTGGAATATATATTGTTAGAGATCTCCATATCTTGTATTGTTGCCATGGTATTTTCTNTGCAAATGTAGAGATAACTGCCCTAAAAATAGAGCGTAGATGAAA CCCCCTTTCTCCTTCAGAAATGGGGACATAAATTAGTAGGTTGTAAATTATTTGCTTCTGTGCCATCCGTGCCTGC AAGAAATTGCGGC CTGTACAGTATGCAGCGCGCTATCCTGTATCAAGAAAATTATTTTATGAATCCTGTGACTAATATGAATCTGTNCTCAANAAGGTTTGGAGAAAAAAAAAA ] [+] EMBL CF328086 [ TTATTTGCTTCTGTGCCATCCGTGCCTGCAAAGAAATTGCGGCACTGTACAGTATGCAGCGCGCTATCCTGTATCAAGAAAATTATTTTATGAATCCTGTGACTAATATGAATCTGT GT AAAAAGGTTTGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||