These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 929 fasta sequence [GCCTCGCTCGAACGCGCGGCGCCGCCATCGCACAGAAGCAGAAGCGCGTCACACGCGAGCGCGGCGGCGCACAGACGCCGTCGAGGCATCGCCCTCGGCCGGTTGCAGACGACGTTCTCTCGCTCGGTCGGCCATCTCCCCTTGCTCACCGCGCGCGGCGCGCCCCCACCGCCCTTGGCAAGCTGCCTCGCCGAGTAGTTCTGATTCGATTCAATCGATTGCCAGAGGAGCCAGGAGGTGTTGAAATTGGAAACCCCTGAAGTTTGATCAGCTGAACCAGTTATCAACTCCAGCAGAACAGTAGAATCTCTAGCTAGCCAAAGAAGCCAAGGATAGCAATGGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGGTTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTACGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAATGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACACGCTAGGTTTGTTGTTCTGTGGGTTTTATTTACTTGATAAGA] [+] EMBL AK101880 [GCCTCGCTCGAACGCGCGGCGCCGCCATCGCACAGAAGCAGAAGCGCGTCACACGCGAGCGCGGCGGCGCACAGACGCCGTCGAGGCATCGCCCTCGGCCGGTTGCAGACGACGTTCTCTCGCTCGGTCGGCCATCTCCCCTTGCTCACCGCGCGCGGCGCGCCCCCACCGCCCTTGGCAAGCTGCCTCGCCGAGTAGTTCTGATTCGATTCAATCGATTGCCAGAGGAGCCAGGAGGTGTTGAAATTGGAAACCCCTGAAGTTTGATCAGCTGAACCAGTTATCAACTCCAGCAGAACAGTAGAATCTCTAGCTAGCCAAAGAAGCCAAGGATAGCAATGGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGGTTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTACGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAATGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAAT ] [+] EMBL AK061130 [ ACGCGCGGCGCCGCCATCGCACAGAAGCAGAAGCGCGTCACACGCGAGCGCGGCGGCGCACAGACGCCGTCGAGGCATCGCCCTCGGCCGGTTGCAGACGACGTTCTCTCGCTCGGTCGGCCATCTCCCCTTGCTCACCGCGCGCGGCGCGCCCCCACCGCCCTTGGCAAGCTGCCTCGCCGAGTAGTTCTGATTCGATTCAATCGATTGCCAGAGGAGCCAGGAGGTGTTGAAATTGGAAACCCCTGAAGTTTGATCAGCTGAACCAGTTATCAACTCCAGCAGAACAGTAGAATCTCTAGCTAGCCAAAGAAGCCAAGGATAGCAATGGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGGTTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTACGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAATGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACACGCTAGGTTTGTTGTTCTGTGGGTTTTATTTACTTGATAAGA] consensusID : consensus_9202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [CTCTTCTCTCCCGTCCCAGATCTCGACTCAACGTTCGTTCTCTACCTCAATACCTCCAAGCCGTGCTACCGACTGCGCTCGTGCCTTCCTCCACACCATTATAACTCTAGCTAACCCAAAGATCTCAGGTACACCCAACCCCCTCCGCCCGCGCCCTCCACTGGCGACACGGCGCAGGTAACCGTCCACAGCTTAACCCCTACTCCCGCGCCTACACGAGGTCGCTCAGGGGTCTGTCCTGGCGACGTGTCCTTTCTTTCCGGGGGTGCTCGCGCCTTCTGCCCGGTCCAAGCAAACCAGTTCCCAGCAGTTTCAGGCGGGCATCCTCCGGAGCAATCTCCGTCAGCTCAGCATCGGCATCGCTCGTCTGACTTTTCAACCCAAAGTGTCAACCCCACAATATAGCACCTTATGCCAAACTTGGGCCCAAGGCTGCATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGGTGGGGAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAACATGTTTATGCAAGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAACGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAAAAAAAAAAAAAAAA] [-] EMBL CA760116 [CTCTTCTCTCCCGTCCCAGATCTCGACTCAACGTTCGTTCTCTACCTCAATACCTCCAAGCCGTGCTACCGACTGCGCTCGTGCCTTCCTCCACACCATTATAACTCTAGCTAACCCAAAGATCTCAGGTACACCCAACCCCCTCCGCCCGCGCCCTCCACTGGCGACACGGCGCAGGTAACCGTCCACAGCTTAACCCCTACTCCCGCGCCTACACGAGGTCGCTCAGGGGTCTGTCCTGGCGACGTGTCCTTTCTTTCCGGGGGTGCTCGCGCCTTCTGCCCGGTCCAAGCAAACCAGTTCCCAGCAGTTTCAGGCGGGCATCCTCCGGAGCAATCTCCGTCAGCTCAGCATCGGCATCGCTCGTCTGACTTTTCAACCCAAAGTGTCAACCCCACAATATAGCACCTTATGCCAAACTTGGGCCCAAGGCTGCATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGGTGGGGAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAACATGTTTATGCAAGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAACGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAAAAAAAAAAAAAAAA] consensusID : consensus_9202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 695 fasta sequence [GGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGGTTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTACGGTCATTGTTCTTATCCATTTAATTCTCCATGATTCATTCTGTTCTATATTCTATCCATCTTGCCAATGGTAGTTAGTACTGACCTTGTGTTTCTTTTGTAGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAAAAATTGNTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACACGCTAGGTTTGGTGGTCTGNGGGNTTTATTTACTTGATAAGATTCTT] [+] EMBL CA765919 [GGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGGTTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTACGGTCATTGTTCTTATCCATTTAATTCTCCATGATTCATTCTGTTCTATATTCTATCCATCTTGCCAATGGTAGTTAGTACTGACCTTGTGTTTCTTTTGTAGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAATGATTGNTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACACGCTAGGTTTGGTGGTCTGNGGGNTTTATTTACTTGATAAGATTCTT] [+] EMBL CF328718 [ GCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAAAAA ] [-] EMBL CF328719 [ CATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAAAAAa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9202#0 GCCTCGCTCGAACGCGCGGCGCCGCCATCGCACAGAAGCAGAAGCGCGTCACACGCGAGC 60 consensus_9202#2 ------------------------------------------------------------ consensus_9202#1 ------------------------------------------------------------ consensus_9202#0 GCGGCGGCGCACAGACGCCGTCGAGGCATCGCCCTCGGCCGGTTGCAGACGACGTTCTCT 120 consensus_9202#2 ------------------------------------------------------------ consensus_9202#1 ------------------------------------------------------------ consensus_9202#0 CGCTCGGTCGGCCATCTCCCCTTGCTCACCGCGCGCGGCGCGCCCCCACCGCCCTTGGCA 180 consensus_9202#2 ------------------------------------------------------------ consensus_9202#1 ------------------------------------------------------------ consensus_9202#0 AGCTGCCTCGCCGAGTAGTTCTGATTCGATTCAATCGATTGCCAGAGGAGCCAGGAGGTG 240 consensus_9202#2 -------------------------GGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGG 35 consensus_9202#1 -----------------------------CTCTTCTCTCCCGTCCCAGATCTCGACTCAA 31 ** * consensus_9202#0 TTGAAATTGGAAACCCCTGAAG-TTTGATCAGCTGAACCAGTTA-----TCAACT-CCAG 293 consensus_9202#2 AGGTAAT-----GCGTCCAGAG-TCTAAGCCTTGCTCCCGGTTG-----ATG-----CGA 79 consensus_9202#1 CGTTCGTTCTCTACCTCAATACCTCCAAGCCGTGCTACCGACTGCGCTCGTGCCTTCCTC 91 * * * * * * * ** * * consensus_9202#0 CAGAACAGTAGAATCTCTAGCTAGCCAAAGAAGCCAAGGATAGCAATGGCACTCCGGC-- 351 consensus_9202#2 CAGACTGCTGGCGTCTTC--TCTGTTGGCGGTGCCCTTTCTTTCTG-GGTGCTCTGCC-- 134 consensus_9202#1 CACACCATTATAACTCTAGCTAACCCAAAGATCTCAGGTACACCCAACCCCCTCCGCCCG 151 ** * * * * * *** * * consensus_9202#0 -GAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGG 410 consensus_9202#2 -GC-CTTCACTACGGTCATTGTT--------CTTATCCA---TTTAATTCTC---CATGA 178 consensus_9202#1 CGCCCTCCACTGGCGACACGGCGCAGG--TAACCGTCCACAGCTTAACCCCTACTCCCGC 209 * * * ** * **** *** * * * consensus_9202#0 TTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGG--TGCCCTTTCTTTCTGGGTGC 468 consensus_9202#2 TTCATTCTGTTCTATATT----CTATCCATCTTGCCAA--TGGTAGTTAGTACTGA-CCT 231 consensus_9202#1 GCCTACACGAGGTCGCTCA--GGGGTCTGTCCTGGCGACGTGTCCTTTCTTTCCGGGGGT 267 ** * ** * ** ** * * * consensus_9202#0 TCTGCCGCCTTCACTACGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCAT 528 consensus_9202#2 TGTGTTTCTTTTGTA--GGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCAT 289 consensus_9202#1 GCTCGCGCCTTCTGCCCGGTCCAAGCAAACCAGTTCCCAGCAGTTTCAGGCGGGCATCCT 327 * * ** ******** * * ******* ** *** ***** ******* * consensus_9202#0 GCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGT 588 consensus_9202#2 GCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGT 349 consensus_9202#1 CCGGAGCAATCTCCGTCAGCTCAGCATCGGCATCGCTCGTCTGACTTTTCAACCCAAAGT 387 ************ ** **************** ****** **** **** **** *** consensus_9202#0 GTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATA 648 consensus_9202#2 GTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATA 409 consensus_9202#1 GTCAACCCCACAATATAGCACCTTATGCCAAACTTGGGCCCAAGGCTGCATAGTATTATA 447 ** **** ** ********* ****** ********* * **** *** *********** consensus_9202#0 GAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATC 708 consensus_9202#2 GAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATC 469 consensus_9202#1 GAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGGTGGGGAGCAAACCTCTGTATC 507 ************************************** * ** **************** consensus_9202#0 GTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCAT 768 consensus_9202#2 GTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCAT 529 consensus_9202#1 GTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAACATGTTTATGCAA 567 *********************************************** *********** consensus_9202#0 GATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTG 828 consensus_9202#2 GATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTG 589 consensus_9202#1 GATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTG 627 ************************************************************ consensus_9202#0 GACAATGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACAC 888 consensus_9202#2 GACAAAAATTGNTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACAC 649 consensus_9202#1 GACAACGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAAAAA 687 ***** **** ********************************************* * consensus_9202#0 GCTAGGTTTGTTGTTCTGTGGGTTTTATTTACTTGATAAGA----- 929 consensus_9202#2 GCTAGGTTTGGTGGTCTGNGGGNTTTATTTACTTGATAAGATTCTT 695 consensus_9202#1 AAAAAAAAAAA----------------------------------- 698 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||